Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002272

Physical Location & Seq

Genomic Coordinates Reverse (-)

6305917 .. 6308417

Gene Structure 2501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG061600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTGGGAGACACCGTCCCATTACCAGCCAATATGTTGTTGACAAGATTACTTCTAAGTTTTTATTTCTGGAGGAGTTGACCTTGCTTACCACTCTTCATTTACCAGAGTTAAACATTTCCAGTCATTCCCTCAAGAAATTAACAATGGAATCCGATTGTTTGCTAGACCACCACTGTAAATCTTATGTAAAGGAGCTCAACATAGATACTCCAAATCTTCTTTGTTTCTCATACAAAACTTGTTCTCCTGACAGAATAGCATCCAAGGTTTCGATGAATTGTTTAAAGCTACAAGTAGTTAATCTCCAGCTGCGCACCAAAATTCATGCGCCTCTTGACACGCCATGGTTTCTTAAATTGCATAAATATGTGGGAATGTTTACACCACATGAAGCATTGAACCTAAGAATTGACCCAGGCTGGTTTGACTTAAGTCCATTCGCGAAATTAAAGCAAATTACATTTTCTCTGGGAGAACTGAGAGAAGAAGACGTAGTGCCCTTATCAGGAGTCATGCGCTTGTGGCTGGAAAATATTCGGTTGGATCAAGATTATAGCTCTCTTGTTGAGGGATTACTTTGGACTTGTCATCCAAAACTCCTATCAGTATCAGTAAGGGAACCGCCGTCTATTAGAGTGAAAGCACAAGGAATGGTTTTGCCCCCTGTAATGAAGAAAGGTGAGAGGAGGATCACGACGATGATGAAGGTGCACGGCGAGGAGAGGCGAGGCAAGGCAGCCCGGGCATCGACGACGTCGTCTAGGGCTCAGTTTGGTGTTGACTCCTTCAAGCCTGAGCCTCCCTCGCTCAGCTTGGTCTCCTTCAAGCCTCCTGATTTTCAAGCCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box LRR_2

Protein Analysis

284

Amino Acids

32.31

Weight (kDa)

9.26

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26980 FvH4_6g32452 FvH4_6g32461 FvH4_6g32741
prunus_persica	Prupe.3G054600_v2.0.a1 Prupe.3G054700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395301
rosa_laevigata	RLG00000020089 RLG00000020183
rosa_multiflora	Rmu_sc0001483.1_g000030 Rmu_sc0002727.1_g000001 Rmu_sc0005789.1_g000002 Rmu_sc0010454.1_g000003 Rmu_sc0010817.1_g000032 Rmu_sc0035624.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434870 Rroxscaffold_2G00100290 Rroxscaffold_2G00103790 Rroxscaffold_2G00104560
rosa_rugosa	Rorug03G0358200
rosa_samantha	Rh2AG420800 Rh2AG439900 Rh2AG449200 Rh2BG425500 Rh2BG430600 Rh2BG449900 Rh2BG461600 Rh2CG407800 Rh2CG426900 Rh2CG436100 Rh2DG440500 Rh2DG459800 Rh2DG470800 Rh4AG058300 Rh4BG057100 Rh4CG062900 Rh4DG053800 Rh6CG063800 Rh6CG064600 Rh6DG060900 Rh6DG061600
rosa_wichuraiana	Rw2G035990 Rw4G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	760
AatII	GACGTC	1 cut(s)	761
Acc16I	TGCGCA	1 cut(s)	317
AccII	CGCG	1 cut(s)	446
AciI	CCGC	1 cut(s)	626
AclWI	GGATC	2 cut(s)	555, 701
AcsI	RAATTY	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	758
AfiI	CCNNNNNNNGG	1 cut(s)	509
AflII	CTTAAG	1 cut(s)	433
AgsI	TTSAA	4 cut(s)	403, 793, 829, 845
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	5 cut(s)	199, 292, 313, 561, 816
AluI	AGCT	5 cut(s)	199, 292, 313, 561, 816
Alw21I	GWGCWC	2 cut(s)	201, 717
Alw26I	GTCTC	2 cut(s)	4, 826
Alw44I	GTGCAC	1 cut(s)	713
AlwI	GGATC	2 cut(s)	555, 701
Ama87I	CYCGRG	1 cut(s)	744
ApaLI	GTGCAC	1 cut(s)	713
ApeKI	GCWGC	2 cut(s)	313, 740
ApoI	RAATTY	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	3 cut(s)	318, 334, 522
AsuC2I	CCSGG	2 cut(s)	745, 746
AsuHPI	GGTGA	1 cut(s)	695
AvaI	CYCGRG	1 cut(s)	744
BaeGI	GKGCMC	2 cut(s)	504, 717
BanII	GRGCYC	2 cut(s)	201, 772
BbsI	GAAGAC	1 cut(s)	498
Bbv12I	GWGCWC	2 cut(s)	201, 717
BbvI	GCAGC	2 cut(s)	300, 752
BceAI	ACGGC	2 cut(s)	613, 733
BciT130I	CCWGG	1 cut(s)	420
BcnI	CCSGG	2 cut(s)	745, 746
BcoDI	GTCTC	2 cut(s)	4, 826
BfaI	CTAG	2 cut(s)	167, 765
BfrI	CTTAAG	1 cut(s)	433
BisI	GCNGC	2 cut(s)	314, 741
BlpI	GCTNAGC	1 cut(s)	812
BlsI	GCNGC	2 cut(s)	315, 742
Bme1390I	CCNGG	3 cut(s)	420, 745, 746
BmeT110I	CYCGRG	1 cut(s)	744
BmiI	GGNNCC	1 cut(s)	624
BmrFI	CCNGG	3 cut(s)	420, 745, 746
BmsI	GCATC	2 cut(s)	272, 758
BoxI	GACNNNNGTC	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	498
BplI	GAGNNNNNCTC	2 cut(s)	791, 823
BpmI	CTGGAG	2 cut(s)	92, 293
Bpu10I	CCTNAGC	1 cut(s)	798
Bpu1102I	GCTNAGC	1 cut(s)	812
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	2 cut(s)	745, 746
BsaHI	GRCGYC	1 cut(s)	758
BsaI	GGTCTC	1 cut(s)	826
BsaJI	CCNNGG	4 cut(s)	267, 347, 418, 744
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 232, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	4 cut(s)	267, 347, 418, 744
BseGI	GGATG	2 cut(s)	263, 592
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMII	CTCAG	4 cut(s)	473, 785, 789, 826
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	3 cut(s)	89, 703, 737
BseSI	GKGCMC	2 cut(s)	504, 717
BseXI	GCAGC	2 cut(s)	300, 752
BseYI	CCCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	446
BsiHKAI	GWGCWC	2 cut(s)	201, 717
BsiHKCI	CYCGRG	1 cut(s)	744
BsiSI	CCGG	1 cut(s)	745
BslFI	GGGAC	1 cut(s)	3
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmAI	GTCTC	2 cut(s)	4, 826
BsmFI	GGGAC	1 cut(s)	3
Bso31I	GGTCTC	1 cut(s)	826
BsoBI	CYCGRG	1 cut(s)	744
Bsp1286I	GDGCHC	4 cut(s)	201, 504, 717, 772
Bsp143I	GATC	2 cut(s)	547, 693
Bsp1720I	GCTNAGC	1 cut(s)	812
Bsp19I	CCATGG	1 cut(s)	347
Bsp68I	TCGCGA	1 cut(s)	446
BspACI	CCGC	1 cut(s)	626
BspCNI	CTCAG	4 cut(s)	474, 784, 790, 825
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	1 cut(s)	624
BspPI	GGATC	2 cut(s)	555, 701
BspTI	CTTAAG	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	826
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	4 cut(s)	267, 347, 418, 744
BssMI	GATC	2 cut(s)	547, 693
BssNI	GRCGYC	1 cut(s)	758
BssT1I	CCWWGG	2 cut(s)	267, 347
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	17, 179
Bst6I	CTCTTC	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	758
BstAFI	CTTAAG	1 cut(s)	433
BstDEI	CTNAG	6 cut(s)	57, 407, 482, 771, 798, 812
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	263, 592
BstFNI	CGCG	1 cut(s)	446
BstHHI	GCGC	3 cut(s)	318, 334, 522
BstKTI	GATC	2 cut(s)	550, 696
BstMAI	GTCTC	2 cut(s)	4, 826
BstMBI	GATC	2 cut(s)	547, 693
BstMWI	GCNNNNNNNGC	3 cut(s)	526, 746, 808
BstNI	CCWGG	1 cut(s)	420
BstPAI	GACNNNNGTC	1 cut(s)	435
BstSCI	CCNGG	3 cut(s)	418, 743, 744
BstSLI	GKGCMC	2 cut(s)	504, 717
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	300, 752
BstV2I	GAAGAC	1 cut(s)	498
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	263, 592
BtsIMutI	CAGTG	1 cut(s)	175
BtuMI	TCGCGA	1 cut(s)	446
CfoI	GCGC	3 cut(s)	318, 334, 522
Cfr9I	CCCGGG	1 cut(s)	744
CviAII	CATG	4 cut(s)	329, 348, 392, 517
DdeI	CTNAG	6 cut(s)	57, 407, 482, 771, 798, 812
DpnI	GATC	2 cut(s)	549, 695
DpnII	GATC	2 cut(s)	547, 693
DraI	TTTAAA	1 cut(s)	288
DrdI	GACNNNNNNGTC	1 cut(s)	760
DseDI	GACNNNNNNGTC	1 cut(s)	760
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	267, 347
Eco24I	GRGCYC	2 cut(s)	201, 772
Eco31I	GGTCTC	1 cut(s)	826
Eco53kI	GAGCTC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	744
EcoICRI	GAGCTC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	2 cut(s)	267, 347
EcoT38I	GRGCYC	2 cut(s)	201, 772
ErhI	CCWWGG	2 cut(s)	267, 347
FaeI	CATG	4 cut(s)	332, 351, 395, 520
FaqI	GGGAC	1 cut(s)	3
FatI	CATG	4 cut(s)	328, 347, 391, 516
Fnu4HI	GCNGC	2 cut(s)	314, 741
FokI	GGATG	2 cut(s)	250, 579
FriOI	GRGCYC	2 cut(s)	201, 772
Fsp4HI	GCNGC	2 cut(s)	314, 741
FspBI	CTAG	2 cut(s)	167, 765
FspI	TGCGCA	1 cut(s)	317
GlaI	GCGC	3 cut(s)	317, 333, 521
GluI	GCNGC	2 cut(s)	314, 741
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	2 cut(s)	92, 293
HapII	CCGG	1 cut(s)	745
HhaI	GCGC	3 cut(s)	318, 334, 522
Hin1I	GRCGYC	1 cut(s)	758
Hin1II	CATG	4 cut(s)	332, 351, 395, 520
Hin6I	GCGC	3 cut(s)	316, 332, 520
HinP1I	GCGC	3 cut(s)	316, 332, 520
HincII	GTYRAC	3 cut(s)	43, 81, 784
HindII	GTYRAC	3 cut(s)	43, 81, 784
HinfI	GANTC	3 cut(s)	152, 513, 785
HpaII	CCGG	1 cut(s)	745
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	5 cut(s)	43, 81, 384, 715, 784
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	9 cut(s)	71, 136, 251, 338, 445, 510, 551, 697, 836
Hpy8I	GTNNAC	5 cut(s)	43, 81, 384, 715, 784
Hpy99I	CGWCG	4 cut(s)	703, 757, 760, 763
HpyAV	CCTTC	3 cut(s)	703, 799, 835
HpyCH4III	ACNGT	2 cut(s)	17, 179
HpyCH4IV	ACGT	2 cut(s)	495, 758
HpyCH4V	TGCA	2 cut(s)	364, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	526, 746, 808
HpyF3I	CTNAG	6 cut(s)	57, 407, 482, 771, 798, 812
HpySE526I	ACGT	2 cut(s)	495, 758
Hsp92I	GRCGYC	1 cut(s)	758
Hsp92II	CATG	4 cut(s)	332, 351, 395, 520
HspAI	GCGC	3 cut(s)	316, 332, 520
Kzo9I	GATC	2 cut(s)	547, 693
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	2 cut(s)	300, 752
LweI	GCATC	2 cut(s)	272, 758
MaeI	CTAG	2 cut(s)	167, 765
MaeII	ACGT	2 cut(s)	495, 758
MalI	GATC	2 cut(s)	549, 695
MboI	GATC	2 cut(s)	547, 693
MboII	GAAGA	5 cut(s)	89, 212, 500, 503, 688
MhlI	GDGCHC	4 cut(s)	201, 504, 717, 772
MluCI	AATT	7 cut(s)	140, 280, 324, 359, 411, 449, 459
MlyI	GAGTC	2 cut(s)	522, 779
MmeI	TCCRAC	1 cut(s)	525
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	7 cut(s)	113, 143, 287, 303, 357, 434, 452
MslI	CAYNNNNRTG	2 cut(s)	369, 701
MspA1I	CMGCKG	1 cut(s)	313
MspCI	CTTAAG	1 cut(s)	433
MspI	CCGG	1 cut(s)	745
MspR9I	CCNGG	3 cut(s)	420, 745, 746
MvaI	CCWGG	1 cut(s)	420
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	3 cut(s)	526, 746, 808
NciI	CCSGG	2 cut(s)	745, 746
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	2 cut(s)	547, 693
NlaIII	CATG	4 cut(s)	332, 351, 395, 520
NlaIV	GGNNCC	1 cut(s)	624
NruI	TCGCGA	1 cut(s)	446
NsbI	TGCGCA	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	758
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	152
PflFI	GACNNNGTC	3 cut(s)	15, 757, 760
PkrI	GCNGC	2 cut(s)	315, 742
PleI	GAGTC	2 cut(s)	521, 779
PpsI	GAGTC	2 cut(s)	521, 779
PshAI	GACNNNNGTC	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	1 cut(s)	624
PsyI	GACNNNGTC	3 cut(s)	15, 757, 760
PvuII	CAGCTG	1 cut(s)	313
RruI	TCGCGA	1 cut(s)	446
RseI	CAYNNNNRTG	2 cut(s)	369, 701
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	7 cut(s)	113, 143, 287, 303, 357, 434, 452
SatI	GCNGC	2 cut(s)	314, 741
Sau3AI	GATC	2 cut(s)	547, 693
SchI	GAGTC	2 cut(s)	522, 779
ScrFI	CCNGG	3 cut(s)	420, 745, 746
SduI	GDGCHC	4 cut(s)	201, 504, 717, 772
SfaNI	GCATC	2 cut(s)	272, 758
SmaI	CCCGGG	1 cut(s)	746
SmiMI	CAYNNNNRTG	2 cut(s)	369, 701
SmlI	CTYRAG	2 cut(s)	134, 433
SmoI	CTYRAG	2 cut(s)	134, 433
SrfI	GCCCGGGC	1 cut(s)	746
Sse9I	AATT	7 cut(s)	140, 280, 324, 359, 411, 449, 459
SsiI	CCGC	1 cut(s)	626
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	2 cut(s)	167, 765
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	3 cut(s)	418, 743, 744
StyI	CCWWGG	2 cut(s)	267, 347
TaaI	ACNGT	2 cut(s)	17, 179
TaiI	ACGT	2 cut(s)	498, 761
TaqI	TCGA	2 cut(s)	275, 752
TasI	AATT	7 cut(s)	140, 280, 324, 359, 411, 449, 459
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	7 cut(s)	113, 143, 287, 303, 357, 434, 452
Tru9I	TTAA	7 cut(s)	113, 143, 287, 303, 357, 434, 452
TscAI	CASTG	1 cut(s)	182
TseI	GCWGC	2 cut(s)	313, 740
TspDTI	ATGAA	6 cut(s)	89, 293, 317, 408, 689, 722
TspMI	CCCGGG	1 cut(s)	744
TspRI	CASTG	1 cut(s)	182
Tth111I	GACNNNGTC	3 cut(s)	15, 757, 760
Vha464I	CTTAAG	1 cut(s)	433
VneI	GTGCAC	1 cut(s)	713
XapI	RAATTY	1 cut(s)	324
XmaI	CCCGGG	1 cut(s)	744
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	2 cut(s)	167, 765
ZraI	GACGTC	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.