FvH4_6g32452

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
25508982 .. 25511147
2166 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32452.t1

Sequence Viewer

Length: 1605 bp
ATGGATCTAATATCCGAGTTGCCGGAGCCTCTCAAGGAGAAAATCCTCTTTGCTTTACCAACTAAAGATGCGATCCGTATGAGCTTCTCGTCCAGGCACTGGCAGAGCCTATGGAACACTGGGTGGAACTCATTACCAGTTACTCGTATTAATTTAGAGGACTCGGTTTCAATGGAAGATTCGTTTACAAGCAGTCTCCTCGAACATGAAGGTCAGAAAAGAATCGTTCACTTCTCACTCGGAGATGGAGTCGAGGAGATGACAAGATTTGATGTTGACCGCTGGATAAAGATGGTCACCCAATATTACGTGACAGAGTTAAAGCTCGATATAACACATAGCTTTCCTCCTGCTACTTTTGATGTTGGGTCCTTGGTTGTACTGAGCTTAACAAATTGTATTTTGGACCCAGCCTTAATCCAAAAGGATACAATCTTCTGTCACCTGAAATCGCTCGGATTGCGGTACGTCGATTTGAATGGGCTAGTCGGGGAGCTCTTTTCTAGATGCCCTTTGCTGGAGAGTTTGGATTTGACATACTGTGAAGACATGCAACATGTTGAACTTTGTGATGTTCCAAATCTAAAGAATGTTGTAGTCATGCAGAATTATTCTGATGTACCTCACACCTTCAAGATGCAAGCACCCAATCTTGAATCTCTTGATTATCAGGAGTGTGCAAGGGAAAGGCCATTGAACCTTGAAGAAGTATGTTGCAGAAATCTAAAGAGGTTGGACATAGATCATCAACAAACGACGATTACCAACCAATACATCGAGGAAGTTGTTCTCAAGTTTCCTTTGCTTGAAGACTTGGTCTTGAATGCTGACTGCTTTGCTTCGGCAGACGATATTGATGATGAGCTCAAAACTTGTTGTCTCAATATATCAAGTCGTTCACTCACTAAATTAAATATAGCTGGAGAAACTTCTGATGCAATGAACATCATCATAGATGCTCCAAGTCTTGTTTCTTACGAAAGCCACAGTTCCGGAGTTTCACATTCGATTTCCTTCAAATCTGTCAAGCTAGAGAAACACATTCTCTGTCTGGATGAACCGACTTTGGACACTGAATGGTTTATCCACTTGCGAAGTTATCTTGGCAAATGTTCACCACATGTAGCAGGATTGTCGGAGATAAAGATATATTCTCCTCAAAGTGTAGAGAAAAAAATTTCAAGCAAGCTGCCGAAGACAGAAGTTACTCCACGGCCAAGAGTCAGGGAACTGGCTCTGGTAAGGGTTCCTTTTGATCCTGCAGATGATGCAGAAGCTCTTATTGACGGCTTACTATGGAGTTGTCAACCAATGCAAGTACGGGTGCAGATGTCACATGACAATGACTATGAAAACAACTTTATAAAGTCCATACATGAAATGTTAATGGATGGAGAACGAGAGTCCCCCTGTGATTGTTGTCAAGAGACTCACTACAAATGTTGGCGGCATTACTTAAAGTCTGTTACGCTTCAGAGTTATATTATAACGAATGATGGGACGGAACATTGTTATAGTAATGAAAATTCTACCATGGACTTGACCCATTTTGAGGAACCTTGCGATGCAATCTTTGCACTACAATGGTTTGATGACTTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

535

Amino Acids

61.14

Weight (kDa)

4.83

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 85 - 277 2.3e-11 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 92 - 225 2.4e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1364, 1487
AccB7I CCANNNNNTGG 1 cut(s) 99
AccIII TCCGGA 1 cut(s) 992
AciI CCGC 3 cut(s) 280, 463, 1447
AclWI GGATC 3 cut(s) 12, 67, 1250
AcoI YGGCCR 1 cut(s) 1214
AcsI RAATTY 2 cut(s) 1176, 1525
AcuI CTGAAG 1 cut(s) 1457
AdeI CACNNNGTG 1 cut(s) 123
AfaI GTAC 4 cut(s) 381, 467, 621, 1320
AfiI CCNNNNNNNGG 3 cut(s) 99, 517, 1552
AflIII ACRYGT 2 cut(s) 556, 1120
AjnI CCWGG 1 cut(s) 92
AjuI GAANNNNNNNTTGG 2 cut(s) 955, 987
Alw21I GWGCWC 2 cut(s) 498, 867
Alw26I GTCTC 3 cut(s) 200, 884, 1421
AlwI GGATC 3 cut(s) 12, 67, 1250
AlwNI CAGNNNCTG 1 cut(s) 99
Aor13HI TCCGGA 1 cut(s) 992
AoxI GGCC 2 cut(s) 689, 1214
ApeKI GCWGC 1 cut(s) 1189
ApoI RAATTY 2 cut(s) 1176, 1525
AseI ATTAAT 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 786
AspS9I GGNCC 2 cut(s) 369, 406
AsuHPI GGTGA 3 cut(s) 289, 434, 1107
AvaII GGWCC 2 cut(s) 369, 406
BanII GRGCYC 2 cut(s) 498, 867
BbsI GAAGAC 3 cut(s) 552, 816, 1202
Bbv12I GWGCWC 2 cut(s) 498, 867
BbvI GCAGC 1 cut(s) 1176
BccI CCATC 4 cut(s) 239, 286, 1385, 1490
BceAI ACGGC 2 cut(s) 1229, 1303
BcgI CGANNNNNNTGC 4 cut(s) 181, 215, 1116, 1150
BciT130I CCWGG 1 cut(s) 94
BciVI GTATCC 1 cut(s) 421
BcoDI GTCTC 3 cut(s) 200, 884, 1421
BfaI CTAG 3 cut(s) 485, 504, 1031
BfmI CTRYAG 1 cut(s) 1260
BfuI GTATCC 1 cut(s) 421
BisI GCNGC 2 cut(s) 1190, 1448
BlsI GCNGC 2 cut(s) 1191, 1449
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 2 cut(s) 369, 406
BmgT120I GGNCC 2 cut(s) 369, 406
BmiI GGNNCC 5 cut(s) 27, 370, 408, 1248, 1557
BmrFI CCNGG 1 cut(s) 94
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 7 cut(s) 58, 497, 627, 925, 946, 1258, 1555
BmuI ACTGGG 1 cut(s) 129
BpiI GAAGAC 3 cut(s) 552, 816, 1202
BpmI CTGGAG 2 cut(s) 539, 942
BpuEI CTTGAG 2 cut(s) 17, 776
BsaAI YACGTR 1 cut(s) 310
BsaJI CCNNGG 3 cut(s) 372, 1211, 1533
BsaWI WCCGGW 1 cut(s) 992
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 517, 1552
Bse1I ACTGG 4 cut(s) 104, 124, 137, 1236
Bse3DI GCAATG 1 cut(s) 945
BseAI TCCGGA 1 cut(s) 992
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 3 cut(s) 372, 1211, 1533
BseGI GGATG 2 cut(s) 1060, 1396
BseLI CCNNNNNNNGG 3 cut(s) 99, 517, 1552
BseMI GCAATG 1 cut(s) 945
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 4 cut(s) 104, 124, 137, 1236
BseRI GAGGAG 3 cut(s) 188, 269, 1146
BseXI GCAGC 1 cut(s) 1176
BseYI CCCAGC 1 cut(s) 409
BsgI GTGCAG 1 cut(s) 1346
BshFI GGCC 2 cut(s) 691, 1216
BsiHKAI GWGCWC 2 cut(s) 498, 867
BsiSI CCGG 2 cut(s) 23, 993
BslFI GGGAC 2 cut(s) 1390, 1513
BslI CCNNNNNNNGG 3 cut(s) 99, 517, 1552
BsmAI GTCTC 3 cut(s) 200, 884, 1421
BsmFI GGGAC 2 cut(s) 1390, 1513
BsmI GAATGC 1 cut(s) 829
BsnI GGCC 2 cut(s) 691, 1216
Bsp1286I GDGCHC 2 cut(s) 498, 867
Bsp13I TCCGGA 1 cut(s) 992
Bsp143I GATC 4 cut(s) 4, 72, 742, 1255
Bsp19I CCATGG 1 cut(s) 1533
BspACI CCGC 3 cut(s) 280, 463, 1447
BspANI GGCC 2 cut(s) 691, 1216
BspCNI CTCAG 1 cut(s) 375
BspEI TCCGGA 1 cut(s) 992
BspLI GGNNCC 5 cut(s) 27, 370, 408, 1248, 1557
BspMAI CTGCAG 1 cut(s) 1264
BspPI GGATC 3 cut(s) 12, 67, 1250
BsrDI GCAATG 1 cut(s) 945
BsrI ACTGG 4 cut(s) 104, 124, 137, 1236
BssECI CCNNGG 3 cut(s) 372, 1211, 1533
BssMI GATC 4 cut(s) 4, 72, 742, 1255
BssT1I CCWWGG 2 cut(s) 372, 1533
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 2 cut(s) 542, 989
BstAPI GCANNNNNTGC 2 cut(s) 1268, 1574
BstBAI YACGTR 1 cut(s) 310
BstC8I GCNNGC 2 cut(s) 642, 1187
BstDEI CTNAG 1 cut(s) 383
BstDSI CCRYGG 2 cut(s) 1211, 1533
BstEII GGTNACC 1 cut(s) 295
BstF5I GGATG 2 cut(s) 1060, 1396
BstKTI GATC 4 cut(s) 7, 75, 745, 1258
BstMAI GTCTC 3 cut(s) 200, 884, 1421
BstMBI GATC 4 cut(s) 4, 72, 742, 1255
BstMWI GCNNNNNNNGC 3 cut(s) 460, 1268, 1574
BstNI CCWGG 1 cut(s) 94
BstNSI RCATGY 3 cut(s) 553, 560, 1124
BstPI GGTNACC 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 1260
BstV1I GCAGC 1 cut(s) 1176
BstV2I GAAGAC 3 cut(s) 552, 816, 1202
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 2 cut(s) 691, 1216
BtgI CCRYGG 2 cut(s) 1211, 1533
BtgZI GCGATG 1 cut(s) 1578
BtsCI GGATG 2 cut(s) 1060, 1396
BtsIMutI CAGTG 3 cut(s) 97, 117, 1071
Cac8I GCNNGC 2 cut(s) 642, 1187
CaiI CAGNNNCTG 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 369, 406
Csp6I GTAC 4 cut(s) 380, 466, 620, 1319
CviAII CATG 8 cut(s) 206, 550, 557, 601, 1121, 1337, 1376, 1534
CviQI GTAC 4 cut(s) 380, 466, 620, 1319
DdeI CTNAG 1 cut(s) 383
DpnI GATC 4 cut(s) 6, 74, 744, 1257
DpnII GATC 4 cut(s) 4, 72, 742, 1255
DraIII CACNNNGTG 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 1214
Ecl136II GAGCTC 2 cut(s) 496, 865
Eco130I CCWWGG 2 cut(s) 372, 1533
Eco24I GRGCYC 2 cut(s) 498, 867
Eco47I GGWCC 2 cut(s) 369, 406
Eco53kI GAGCTC 2 cut(s) 496, 865
Eco57I CTGAAG 1 cut(s) 1457
Eco91I GGTNACC 1 cut(s) 295
EcoICRI GAGCTC 2 cut(s) 496, 865
EcoO109I RGGNCCY 1 cut(s) 369
EcoO65I GGTNACC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 2 cut(s) 372, 1533
EcoT38I GRGCYC 2 cut(s) 498, 867
ErhI CCWWGG 2 cut(s) 372, 1533
FaeI CATG 8 cut(s) 209, 553, 560, 604, 1124, 1340, 1379, 1537
FalI AAGNNNNNCTT 2 cut(s) 1234, 1266
FaqI GGGAC 2 cut(s) 1390, 1513
FatI CATG 8 cut(s) 205, 549, 556, 600, 1120, 1336, 1375, 1533
Fnu4HI GCNGC 2 cut(s) 1190, 1448
FokI GGATG 2 cut(s) 1067, 1403
FriOI GRGCYC 2 cut(s) 498, 867
Fsp4HI GCNGC 2 cut(s) 1190, 1448
FspBI CTAG 3 cut(s) 485, 504, 1031
GluI GCNGC 2 cut(s) 1190, 1448
GsaI CCCAGC 1 cut(s) 413
GsuI CTGGAG 2 cut(s) 539, 942
HaeIII GGCC 2 cut(s) 691, 1216
HapII CCGG 2 cut(s) 23, 993
Hin1II CATG 8 cut(s) 209, 553, 560, 604, 1124, 1340, 1379, 1537
HincII GTYRAC 2 cut(s) 277, 1307
HindII GTYRAC 2 cut(s) 277, 1307
HinfI GANTC 8 cut(s) 161, 179, 222, 249, 656, 1221, 1403, 1429
HpaII CCGG 2 cut(s) 23, 993
HphI GGTGA 3 cut(s) 289, 434, 1107
Hpy166II GTNNAC 6 cut(s) 186, 229, 277, 899, 1115, 1307
Hpy188I TCNGA 8 cut(s) 16, 216, 242, 458, 616, 934, 1138, 1476
Hpy188III TCNNGA 9 cut(s) 504, 634, 653, 662, 671, 820, 993, 1052, 1424
Hpy8I GTNNAC 6 cut(s) 186, 229, 277, 899, 1115, 1307
Hpy99I CGWCG 2 cut(s) 473, 760
HpyAV CCTTC 3 cut(s) 203, 640, 1024
HpyCH4III ACNGT 2 cut(s) 542, 989
HpyCH4IV ACGT 2 cut(s) 309, 468
HpyF10VI GCNNNNNNNGC 3 cut(s) 460, 1268, 1574
HpyF3I CTNAG 1 cut(s) 383
HpySE526I ACGT 2 cut(s) 309, 468
Hsp92II CATG 8 cut(s) 209, 553, 560, 604, 1124, 1340, 1379, 1537
Kpn2I TCCGGA 1 cut(s) 992
Kzo9I GATC 4 cut(s) 4, 72, 742, 1255
LmnI GCTCC 3 cut(s) 25, 493, 964
Lsp1109I GCAGC 1 cut(s) 1176
LweI GCATC 7 cut(s) 58, 497, 627, 925, 946, 1258, 1555
MaeI CTAG 3 cut(s) 485, 504, 1031
MaeII ACGT 2 cut(s) 309, 468
MaeIII GTNAC 7 cut(s) 139, 295, 310, 440, 1204, 1332, 1465
MalI GATC 4 cut(s) 6, 74, 744, 1257
MboI GATC 4 cut(s) 4, 72, 742, 1255
MboII GAAGA 6 cut(s) 188, 427, 557, 716, 821, 1207
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 498, 867
MluCI AATT 6 cut(s) 151, 394, 607, 908, 1176, 1525
MlyI GAGTC 5 cut(s) 155, 258, 1230, 1412, 1423
MmeI TCCRAC 2 cut(s) 714, 1116
MroI TCCGGA 1 cut(s) 992
MroXI GAANNNNTTC 1 cut(s) 786
MseI TTAA 7 cut(s) 150, 320, 389, 416, 911, 1385, 1457
MslI CAYNNNNRTG 2 cut(s) 1341, 1582
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 2 cut(s) 23, 993
MspR9I CCNGG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 829
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 3 cut(s) 460, 1268, 1574
NcoI CCATGG 1 cut(s) 1533
NdeII GATC 4 cut(s) 4, 72, 742, 1255
NlaIII CATG 8 cut(s) 209, 553, 560, 604, 1124, 1340, 1379, 1537
NlaIV GGNNCC 5 cut(s) 27, 370, 408, 1248, 1557
NmuCI GTSAC 4 cut(s) 295, 310, 440, 1332
NspI RCATGY 3 cut(s) 553, 560, 1124
PciI ACATGT 2 cut(s) 556, 1120
PctI GAATGC 1 cut(s) 829
PdmI GAANNNNTTC 1 cut(s) 786
PfeI GAWTC 3 cut(s) 179, 222, 656
PflFI GACNNNGTC 1 cut(s) 815
PflMI CCANNNNNTGG 1 cut(s) 99
PkrI GCNGC 2 cut(s) 1191, 1449
PleI GAGTC 5 cut(s) 155, 257, 1229, 1411, 1423
PpsI GAGTC 5 cut(s) 155, 257, 1229, 1411, 1423
Ppu21I YACGTR 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 369
PscI ACATGT 2 cut(s) 556, 1120
PshBI ATTAAT 1 cut(s) 150
PsiI TTATAA 2 cut(s) 1364, 1487
Psp124BI GAGCTC 2 cut(s) 498, 867
Psp5II RGGWCCY 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 92
PspEI GGTNACC 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 409
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 5 cut(s) 27, 370, 408, 1248, 1557
PspPI GGNCC 2 cut(s) 369, 406
PspPPI RGGWCCY 1 cut(s) 369
PstI CTGCAG 1 cut(s) 1264
PstNI CAGNNNCTG 1 cut(s) 99
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 815
RsaI GTAC 4 cut(s) 381, 467, 621, 1320
RsaNI GTAC 4 cut(s) 380, 466, 620, 1319
RseI CAYNNNNRTG 2 cut(s) 1341, 1582
SacI GAGCTC 2 cut(s) 498, 867
SaqAI TTAA 7 cut(s) 150, 320, 389, 416, 911, 1385, 1457
SatI GCNGC 2 cut(s) 1190, 1448
Sau3AI GATC 4 cut(s) 4, 72, 742, 1255
Sau96I GGNCC 2 cut(s) 369, 406
SchI GAGTC 5 cut(s) 155, 258, 1230, 1412, 1423
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 2 cut(s) 498, 867
SfaNI GCATC 7 cut(s) 58, 497, 627, 925, 946, 1258, 1555
SfcI CTRYAG 1 cut(s) 1260
SinI GGWCC 2 cut(s) 369, 406
SmiMI CAYNNNNRTG 2 cut(s) 1341, 1582
SmlI CTYRAG 2 cut(s) 32, 791
SmoI CTYRAG 2 cut(s) 32, 791
Sse9I AATT 6 cut(s) 151, 394, 607, 908, 1176, 1525
SsiI CCGC 3 cut(s) 280, 463, 1447
SspI AATATT 1 cut(s) 305
SspMI CTAG 3 cut(s) 485, 504, 1031
SstI GAGCTC 2 cut(s) 498, 867
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 2 cut(s) 372, 1533
TaaI ACNGT 2 cut(s) 542, 989
TaiI ACGT 2 cut(s) 312, 471
TaqI TCGA 6 cut(s) 201, 252, 327, 471, 777, 1007
TasI AATT 6 cut(s) 151, 394, 607, 908, 1176, 1525
TatI WGTACW 1 cut(s) 379
TauI GCSGC 1 cut(s) 1450
TfiI GAWTC 3 cut(s) 179, 222, 656
Tru1I TTAA 7 cut(s) 150, 320, 389, 416, 911, 1385, 1457
Tru9I TTAA 7 cut(s) 150, 320, 389, 416, 911, 1385, 1457
TscAI CASTG 3 cut(s) 104, 124, 1078
TseFI GTSAC 4 cut(s) 295, 310, 440, 1332
TseI GCWGC 1 cut(s) 1189
Tsp45I GTSAC 4 cut(s) 295, 310, 440, 1332
TspDTI ATGAA 6 cut(s) 222, 956, 1071, 1365, 1392, 1536
TspGWI ACGGA 2 cut(s) 65, 1517
TspRI CASTG 3 cut(s) 104, 124, 1078
Tth111I GACNNNGTC 1 cut(s) 815
Van91I CCANNNNNTGG 1 cut(s) 99
VpaK11BI GGWCC 2 cut(s) 369, 406
VspI ATTAAT 1 cut(s) 150
XapI RAATTY 2 cut(s) 1176, 1525
XbaI TCTAGA 1 cut(s) 503
XceI RCATGY 3 cut(s) 553, 560, 1124
XmnI GAANNNNTTC 1 cut(s) 786
XspI CTAG 3 cut(s) 485, 504, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.