Rorug03G0358200

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
44590368 .. 44590769
402 bp
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UTR
Exon/CDS
Intron
Rorug03G0358200.1

Sequence Viewer

Length: 402 bp
ATGTGTGGTGGTGCTCACAATGTTGGTTTTGACAATAGGGACTGCTATAATCATTTAAGGAACGTGAGACACAAAGATTTGGAATATGGAGATGCACAATTAGTCCTCAATTACGTCAGAAAAAAGCAAGCAGAAAATCCACAATTCTTTTATGCTATCCAGTGTGATGAAGATGGTAGAGTTACTAATTTTTTTTGGGTGGATTCTAGATCAAGGACGGCATATCAATATTTTGGGGATGTAGTGACATTTGATACAACATATCGGACAAACAGGTATGACATGCCATTTGCCCCATTTACTGGAGTAAACCATCACTTCCGGTCCATACAATTTGGATGTGCCCTTTTGAAAGATGAGACAGAGGCGACATTCATTATGTGTTATCATATTTGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

15.78

Weight (kDa)

6.27

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 45 - 126 3.1e-06 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 81 - 127 2.8e-12 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 1 cut(s) 352
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 2 cut(s) 61, 353
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AspS9I GGNCC 1 cut(s) 324
AvaII GGWCC 1 cut(s) 324
BaeGI GKGCMC 1 cut(s) 346
Bbv12I GWGCWC 1 cut(s) 16
BccI CCATC 2 cut(s) 167, 321
BceAI ACGGC 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 61, 353
BfaI CTAG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 324
BmsI GCATC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 324
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse1I ACTGG 2 cut(s) 160, 307
BseGI GGATG 2 cut(s) 244, 344
BseLI CCNNNNNNNGG 1 cut(s) 302
BseNI ACTGG 2 cut(s) 160, 307
BseSI GKGCMC 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 322
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 302
BsmAI GTCTC 2 cut(s) 61, 353
BsmFI GGGAC 1 cut(s) 53
Bsp1286I GDGCHC 2 cut(s) 16, 346
Bsp143I GATC 1 cut(s) 209
BsrI ACTGG 2 cut(s) 160, 307
BssMI GATC 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 129
BstF5I GGATG 2 cut(s) 244, 344
BstKTI GATC 1 cut(s) 212
BstMAI GTCTC 2 cut(s) 61, 353
BstMBI GATC 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 286
BstSLI GKGCMC 1 cut(s) 346
BtsCI GGATG 2 cut(s) 244, 344
BtsIMutI CAGTG 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 324
CviAII CATG 1 cut(s) 283
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 324
FaeI CATG 1 cut(s) 286
FaqI GGGAC 1 cut(s) 53
FatI CATG 1 cut(s) 282
FokI GGATG 2 cut(s) 251, 351
FspBI CTAG 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 324
HapII CCGG 1 cut(s) 322
Hin1II CATG 1 cut(s) 286
HinfI GANTC 1 cut(s) 203
HpaII CCGG 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 2 cut(s) 119, 267
Hpy188III TCNNGA 1 cut(s) 207
Hpy8I GTNNAC 1 cut(s) 310
HpyCH4IV ACGT 2 cut(s) 63, 114
HpyCH4V TGCA 1 cut(s) 95
HpySE526I ACGT 2 cut(s) 63, 114
Hsp92II CATG 1 cut(s) 286
Kzo9I GATC 1 cut(s) 209
LpnPI CCDG 4 cut(s) 173, 259, 288, 335
LweI GCATC 1 cut(s) 82
MaeI CTAG 1 cut(s) 207
MaeII ACGT 2 cut(s) 63, 114
MaeIII GTNAC 2 cut(s) 181, 244
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 1 cut(s) 182
MhlI GDGCHC 2 cut(s) 16, 346
MluCI AATT 5 cut(s) 98, 109, 143, 187, 332
MnlI CCTC 2 cut(s) 116, 358
MseI TTAA 1 cut(s) 56
MspI CCGG 1 cut(s) 322
NdeII GATC 1 cut(s) 209
NlaIII CATG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 244
NspI RCATGY 1 cut(s) 286
PfeI GAWTC 1 cut(s) 203
PflMI CCANNNNNTGG 1 cut(s) 302
PspPI GGNCC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 56
Sau3AI GATC 1 cut(s) 209
Sau96I GGNCC 1 cut(s) 324
SduI GDGCHC 2 cut(s) 16, 346
SetI ASST 3 cut(s) 66, 117, 278
SfaNI GCATC 1 cut(s) 82
SgeI CNNG 9 cut(s) 76, 140, 172, 219, 225, 286, 295, 315, 334
SinI GGWCC 1 cut(s) 324
Sse9I AATT 5 cut(s) 98, 109, 143, 187, 332
SspI AATATT 1 cut(s) 230
SspMI CTAG 1 cut(s) 207
TaiI ACGT 2 cut(s) 66, 117
TasI AATT 5 cut(s) 98, 109, 143, 187, 332
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 183, 364
TspRI CASTG 1 cut(s) 167
Van91I CCANNNNNTGG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 324
XbaI TCTAGA 1 cut(s) 206
XceI RCATGY 1 cut(s) 286
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.