Rmu_sc0005789.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005789.1
Physical Location & Seq
Reverse (-)
17732 .. 19679
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005789.1_g000002.1.cds

Sequence Viewer

Length: 1482 bp
atggatcaaatatctgagttggtggaaccccttatggggacacagccagtcgctgcttttgattttaacaactcggcttatttcggaggcacaagaaggtcccgaaagaagtttgtgacttttgttgatgattccttggaaagaaacctccctgagcatgaagaccagaaaaagttcgttcagttctcgttggctattgcaacccttgacagcaagctgaaagactctgatgttgtcgaccgctggataaagatggttaccaaacactatgtgacagagttaaaactccggatcaaaaacgcaccaaagattaggtaccaatttcccccggctgcttttgatgttgggcaattagttgtactggagctaatgcactgtactttggagaaagcctttattcaagaggataccatgtttcttccaattcttcggttaaaagagctcagattcagtcatgtcgatttcaatggggtagtcgtcggggagctgctgtctagatgccctttgcttgagactttggcattacgctcctgtggaaacataaaacatctcgaacttagtgattttccaaatctcaagaatgttgaactttggaatgattcagatgatgatgatgatatttttacctacaagattgactcacccgatcttgaatctcttctttatttggagtatggaaagtcaatggaaatcgaagcagtcacttgcgaaaatttaaagacgctgcatatagttactcatggctctaccattacggaccaatatatcaaggaagtcaattccaaatttccttttcttgaaaccttgatactgaatgccagatcttttggatcaaaagatgctgatgagattagtatttcgggtcataacctcaattcactgctagtttgtggacatatttgcaaacatatgatcatcaatatagatgcaccaaatcttcttagttaccaacgcgagggtgacgaaattcctccctcgttttcgttgaattctgtgaagctagaatgggctaactttattgtacctggagctcatctcaacagtgcatggtttattaaattgcgagaatatctgggaaagtttaagggttgtgatcatcttcgcttcagaatatgtcataagcagccttgcaagacagtcaaattttcttttgacgaattacaagaagaaaaacttcctcccctgccaaaggtcaggcaattggttctgaaaaatgttccaccatcgagagactattcaactcttatcgatggcttactttggagttgccatccactcaccatatcagtacaagcacgcgagggagctgaggagggagatggacatggagacggagatgatgatgatggattggatgatgcagaattattgaaaacattgaggggtctcgaaaagaatcatgtttttgagttacaatggtcgacgtttgaggagaatggagaactagataatttcgaaattgtgtttggaattttggattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

493

Amino Acids

56.25

Weight (kDa)

5.09

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 315
AccI GTMKAC 2 cut(s) 237, 1421
AccII CGCG 2 cut(s) 954, 1299
AccIII TCCGGA 1 cut(s) 288
AciI CCGC 1 cut(s) 241
AclWI GGATC 3 cut(s) 12, 299, 838
AcsI RAATTY 6 cut(s) 712, 785, 966, 988, 1142, 1470
AcuI CTGAAG 1 cut(s) 1090
AdeI CACNNNGTG 1 cut(s) 271
AfaI GTAC 5 cut(s) 317, 360, 379, 1023, 1290
AfiI CCNNNNNNNGG 4 cut(s) 35, 36, 955, 1189
AgsI TTSAA 8 cut(s) 401, 466, 587, 653, 800, 988, 1239, 1372
AjnI CCWGG 1 cut(s) 1024
AjuI GAANNNNNNNTTGG 2 cut(s) 1449, 1481
AluBI AGCT 7 cut(s) 217, 367, 442, 487, 1000, 1031, 1307
AluI AGCT 7 cut(s) 217, 367, 442, 487, 1000, 1031, 1307
Alw21I GWGCWC 2 cut(s) 444, 1033
Alw26I GTCTC 4 cut(s) 506, 1224, 1323, 1391
AlwI GGATC 3 cut(s) 12, 299, 838
AlwNI CAGNNNCTG 1 cut(s) 53
Aor13HI TCCGGA 1 cut(s) 288
ApeKI GCWGC 5 cut(s) 53, 332, 487, 724, 1123
ApoI RAATTY 6 cut(s) 712, 785, 966, 988, 1142, 1470
Asp700I GAANNNNTTC 3 cut(s) 173, 657, 1173
Asp718I GGTACC 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 99, 757
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 3 cut(s) 633, 971, 1270
AsuII TTCGAA 1 cut(s) 1455
AvaII GGWCC 2 cut(s) 99, 757
BanI GGYRCC 1 cut(s) 315
BanII GRGCYC 2 cut(s) 444, 1033
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 444, 1033
BbvCI CCTCAGC 1 cut(s) 1308
BbvI GCAGC 5 cut(s) 40, 319, 474, 711, 1135
BccI CCATC 6 cut(s) 247, 1231, 1244, 1278, 1313, 1340
BciT130I CCWGG 1 cut(s) 1026
BciVI GTATCC 1 cut(s) 400
BclI TGATCA 2 cut(s) 912, 1093
BcnI CCSGG 1 cut(s) 329
BcoDI GTCTC 4 cut(s) 506, 1224, 1323, 1391
BfaI CTAG 4 cut(s) 495, 884, 1001, 1445
BfuI GTATCC 1 cut(s) 400
BglII AGATCT 1 cut(s) 821
BisI GCNGC 5 cut(s) 54, 333, 488, 725, 1124
BlsI GCNGC 5 cut(s) 55, 334, 489, 726, 1125
Bme1390I CCNGG 2 cut(s) 329, 1026
Bme18I GGWCC 2 cut(s) 99, 757
BmgT120I GGNCC 2 cut(s) 99, 757
BmiI GGNNCC 3 cut(s) 27, 101, 317
BmrFI CCNGG 2 cut(s) 329, 1026
BmsI GCATC 4 cut(s) 488, 829, 916, 1348
BpiI GAAGAC 1 cut(s) 168
BplI GAGNNNNNCTC 2 cut(s) 1020, 1052
BpmI CTGGAG 2 cut(s) 383, 1047
Bpu10I CCTNAGC 2 cut(s) 153, 1308
Bpu14I TTCGAA 1 cut(s) 1455
BpuEI CTTGAG 2 cut(s) 530, 560
BpuMI CCSGG 1 cut(s) 329
Bsa29I ATCGAT 1 cut(s) 1248
BsaI GGTCTC 1 cut(s) 1391
BsaJI CCNNGG 2 cut(s) 135, 327
BsaWI WCCGGW 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 36, 955, 1189
Bse1I ACTGG 2 cut(s) 47, 366
BseAI TCCGGA 1 cut(s) 288
BseBI CCWGG 1 cut(s) 1026
BseCI ATCGAT 1 cut(s) 1248
BseDI CCNNGG 2 cut(s) 135, 327
BseGI GGATG 2 cut(s) 1270, 1360
BseLI CCNNNNNNNGG 4 cut(s) 35, 36, 955, 1189
BseMII CTCAG 4 cut(s) 6, 144, 457, 1299
BseNI ACTGG 2 cut(s) 47, 366
BseRI GAGGAG 2 cut(s) 1325, 1445
BseXI GCAGC 5 cut(s) 40, 319, 474, 711, 1135
Bsh1236I CGCG 2 cut(s) 954, 1299
Bsh1285I CGRYCG 1 cut(s) 241
BshNI GGYRCC 1 cut(s) 315
BshVI ATCGAT 1 cut(s) 1248
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 2 cut(s) 444, 1033
BsiSI CCGG 2 cut(s) 289, 329
BslFI GGGAC 2 cut(s) 52, 85
BslI CCNNNNNNNGG 4 cut(s) 35, 36, 955, 1189
BsmAI GTCTC 4 cut(s) 506, 1224, 1323, 1391
BsmBI CGTCTC 1 cut(s) 1323
BsmFI GGGAC 2 cut(s) 52, 85
BsmI GAATGC 1 cut(s) 820
Bso31I GGTCTC 1 cut(s) 1391
Bsp119I TTCGAA 1 cut(s) 1455
Bsp1286I GDGCHC 2 cut(s) 444, 1033
Bsp13I TCCGGA 1 cut(s) 288
Bsp143I GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
BspACI CCGC 1 cut(s) 241
BspCNI CTCAG 4 cut(s) 7, 145, 456, 1300
BspDI ATCGAT 1 cut(s) 1248
BspEI TCCGGA 1 cut(s) 288
BspFNI CGCG 2 cut(s) 954, 1299
BspLI GGNNCC 3 cut(s) 27, 101, 317
BspPI GGATC 3 cut(s) 12, 299, 838
BspT104I TTCGAA 1 cut(s) 1455
BspT107I GGYRCC 1 cut(s) 315
BspTNI GGTCTC 1 cut(s) 1391
BsrI ACTGG 2 cut(s) 47, 366
BssECI CCNNGG 2 cut(s) 135, 327
BssMI GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 1026
Bst4CI ACNGT 3 cut(s) 377, 1043, 1138
Bst6I CTCTTC 1 cut(s) 663
BstBI TTCGAA 1 cut(s) 1455
BstC8I GCNNGC 2 cut(s) 215, 1297
BstDEI CTNAG 6 cut(s) 15, 153, 443, 557, 941, 1308
BstEII GGTNACC 1 cut(s) 256
BstENI CCTNNNNNAGG 1 cut(s) 1187
BstF5I GGATG 2 cut(s) 1270, 1360
BstFNI CGCG 2 cut(s) 954, 1299
BstKTI GATC 7 cut(s) 7, 294, 649, 824, 833, 915, 1096
BstMAI GTCTC 4 cut(s) 506, 1224, 1323, 1391
BstMBI GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
BstMCI CGRYCG 1 cut(s) 241
BstNI CCWGG 1 cut(s) 1026
BstPI GGTNACC 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 327, 1024
BstUI CGCG 2 cut(s) 954, 1299
BstV1I GCAGC 5 cut(s) 40, 319, 474, 711, 1135
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 821
BstYI RGATCY 1 cut(s) 821
Bsu15I ATCGAT 1 cut(s) 1248
BsuI GTATCC 1 cut(s) 400
BsuTUI ATCGAT 1 cut(s) 1248
BtsCI GGATG 2 cut(s) 1270, 1360
BtsI GCAGTG 1 cut(s) 878
BtsIMutI CAGTG 3 cut(s) 373, 878, 1048
Cac8I GCNNGC 2 cut(s) 215, 1297
CaiI CAGNNNCTG 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 99, 757
ClaI ATCGAT 1 cut(s) 1248
CseI GACGC 1 cut(s) 730
Csp6I GTAC 5 cut(s) 316, 359, 378, 1022, 1289
CviAII CATG 7 cut(s) 158, 412, 455, 740, 1047, 1325, 1400
CviQI GTAC 5 cut(s) 316, 359, 378, 1022, 1289
DdeI CTNAG 6 cut(s) 15, 153, 443, 557, 941, 1308
DpnI GATC 7 cut(s) 6, 293, 648, 823, 832, 914, 1095
DpnII GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
DraI TTTAAA 1 cut(s) 717
DraIII CACNNNGTG 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Ecl136II GAGCTC 2 cut(s) 442, 1031
Eco130I CCWWGG 1 cut(s) 135
Eco24I GRGCYC 2 cut(s) 444, 1033
Eco31I GGTCTC 1 cut(s) 1391
Eco47I GGWCC 2 cut(s) 99, 757
Eco53kI GAGCTC 2 cut(s) 442, 1031
Eco57I CTGAAG 1 cut(s) 1090
Eco91I GGTNACC 1 cut(s) 256
EcoICRI GAGCTC 2 cut(s) 442, 1031
EcoNI CCTNNNNNAGG 1 cut(s) 1187
EcoO109I RGGNCCY 1 cut(s) 99
EcoO65I GGTNACC 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 988
EcoRII CCWGG 1 cut(s) 1024
EcoT14I CCWWGG 1 cut(s) 135
EcoT38I GRGCYC 2 cut(s) 444, 1033
ErhI CCWWGG 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 1323
FaeI CATG 7 cut(s) 161, 415, 458, 743, 1050, 1328, 1403
FalI AAGNNNNNCTT 2 cut(s) 1158, 1190
FaqI GGGAC 2 cut(s) 52, 85
FatI CATG 7 cut(s) 157, 411, 454, 739, 1046, 1324, 1399
FauNDI CATATG 1 cut(s) 909
FbaI TGATCA 2 cut(s) 912, 1093
FblI GTMKAC 2 cut(s) 237, 1421
Fnu4HI GCNGC 5 cut(s) 54, 333, 488, 725, 1124
FokI GGATG 2 cut(s) 1257, 1367
FriOI GRGCYC 2 cut(s) 444, 1033
Fsp4HI GCNGC 5 cut(s) 54, 333, 488, 725, 1124
FspBI CTAG 4 cut(s) 495, 884, 1001, 1445
GluI GCNGC 5 cut(s) 54, 333, 488, 725, 1124
GsuI CTGGAG 2 cut(s) 383, 1047
HapII CCGG 2 cut(s) 289, 329
HgaI GACGC 1 cut(s) 730
Hin1II CATG 7 cut(s) 161, 415, 458, 743, 1050, 1328, 1403
HincII GTYRAC 2 cut(s) 238, 1422
HindII GTYRAC 2 cut(s) 238, 1422
HinfI GANTC 7 cut(s) 131, 224, 447, 599, 638, 653, 1396
HpaII CCGG 2 cut(s) 289, 329
HphI GGTGA 3 cut(s) 633, 971, 1270
Hpy166II GTNNAC 3 cut(s) 238, 893, 1422
Hpy188I TCNGA 7 cut(s) 16, 86, 229, 446, 604, 1109, 1209
Hpy8I GTNNAC 3 cut(s) 238, 893, 1422
Hpy99I CGWCG 2 cut(s) 482, 1426
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 3 cut(s) 377, 1043, 1138
HpyCH4IV ACGT 1 cut(s) 1424
HpyCH4V TGCA 8 cut(s) 200, 373, 727, 903, 929, 1046, 1131, 1361
HpyF3I CTNAG 6 cut(s) 15, 153, 443, 557, 941, 1308
HpySE526I ACGT 1 cut(s) 1424
Hsp92II CATG 7 cut(s) 161, 415, 458, 743, 1050, 1328, 1403
Kpn2I TCCGGA 1 cut(s) 288
KpnI GGTACC 1 cut(s) 319
Ksp22I TGATCA 2 cut(s) 912, 1093
Kzo9I GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
LmnI GCTCC 5 cut(s) 364, 484, 533, 1028, 1304
Lsp1109I GCAGC 5 cut(s) 40, 319, 474, 711, 1135
LweI GCATC 4 cut(s) 488, 829, 916, 1348
MaeI CTAG 4 cut(s) 495, 884, 1001, 1445
MaeII ACGT 1 cut(s) 1424
MaeIII GTNAC 8 cut(s) 115, 256, 271, 700, 733, 944, 959, 1410
MalI GATC 7 cut(s) 6, 293, 648, 823, 832, 914, 1095
MboI GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
MboII GAAGA 7 cut(s) 173, 410, 419, 650, 929, 1091, 1178
MfeI CAATTG 1 cut(s) 1199
MflI RGATCY 1 cut(s) 821
MhlI GDGCHC 2 cut(s) 444, 1033
MlyI GAGTC 2 cut(s) 218, 632
MroI TCCGGA 1 cut(s) 288
MroXI GAANNNNTTC 3 cut(s) 173, 657, 1173
MseI TTAA 7 cut(s) 66, 281, 434, 716, 1056, 1083, 1480
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 2 cut(s) 289, 329
MspR9I CCNGG 2 cut(s) 329, 1026
MunI CAATTG 1 cut(s) 1199
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 1 cut(s) 1026
MvnI CGCG 2 cut(s) 954, 1299
NciI CCSGG 1 cut(s) 329
NdeI CATATG 1 cut(s) 909
NdeII GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
NlaIII CATG 7 cut(s) 161, 415, 458, 743, 1050, 1328, 1403
NlaIV GGNNCC 3 cut(s) 27, 101, 317
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 4 cut(s) 115, 271, 700, 959
NspV TTCGAA 1 cut(s) 1455
PctI GAATGC 1 cut(s) 820
PdmI GAANNNNTTC 3 cut(s) 173, 657, 1173
PfeI GAWTC 5 cut(s) 131, 447, 599, 653, 1396
PkrI GCNGC 5 cut(s) 55, 334, 489, 726, 1125
PleI GAGTC 2 cut(s) 218, 632
PpsI GAGTC 2 cut(s) 218, 632
PpuMI RGGWCCY 1 cut(s) 99
Psp124BI GAGCTC 2 cut(s) 444, 1033
Psp5II RGGWCCY 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 1024
PspEI GGTNACC 1 cut(s) 256
PspGI CCWGG 1 cut(s) 1024
PspN4I GGNNCC 3 cut(s) 27, 101, 317
PspPI GGNCC 2 cut(s) 99, 757
PspPPI RGGWCCY 1 cut(s) 99
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 821
RsaI GTAC 5 cut(s) 317, 360, 379, 1023, 1290
RsaNI GTAC 5 cut(s) 316, 359, 378, 1022, 1289
SacI GAGCTC 2 cut(s) 444, 1033
SalI GTCGAC 2 cut(s) 236, 1420
SaqAI TTAA 7 cut(s) 66, 281, 434, 716, 1056, 1083, 1480
SatI GCNGC 5 cut(s) 54, 333, 488, 725, 1124
Sau3AI GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
Sau96I GGNCC 2 cut(s) 99, 757
SchI GAGTC 2 cut(s) 218, 632
ScrFI CCNGG 2 cut(s) 329, 1026
SduI GDGCHC 2 cut(s) 444, 1033
SfaNI GCATC 4 cut(s) 488, 829, 916, 1348
SfuI TTCGAA 1 cut(s) 1455
SinI GGWCC 2 cut(s) 99, 757
SmlI CTYRAG 2 cut(s) 509, 575
SmoI CTYRAG 2 cut(s) 509, 575
SsiI CCGC 1 cut(s) 241
SspMI CTAG 4 cut(s) 495, 884, 1001, 1445
SstI GAGCTC 2 cut(s) 444, 1033
StyD4I CCNGG 2 cut(s) 327, 1024
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 3 cut(s) 377, 1043, 1138
TaiI ACGT 1 cut(s) 1427
TaqI TCGA 9 cut(s) 237, 459, 552, 693, 1226, 1248, 1389, 1421, 1455
TatI WGTACW 3 cut(s) 358, 377, 1288
TfiI GAWTC 5 cut(s) 131, 447, 599, 653, 1396
Tru1I TTAA 7 cut(s) 66, 281, 434, 716, 1056, 1083, 1480
Tru9I TTAA 7 cut(s) 66, 281, 434, 716, 1056, 1083, 1480
TscAI CASTG 3 cut(s) 380, 885, 1048
TseFI GTSAC 4 cut(s) 115, 271, 700, 959
TseI GCWGC 5 cut(s) 53, 332, 487, 724, 1123
Tsp45I GTSAC 4 cut(s) 115, 271, 700, 959
TspDTI ATGAA 1 cut(s) 174
TspGWI ACGGA 2 cut(s) 770, 1347
TspRI CASTG 3 cut(s) 380, 885, 1048
VpaK11BI GGWCC 2 cut(s) 99, 757
XagI CCTNNNNNAGG 1 cut(s) 1187
XapI RAATTY 6 cut(s) 712, 785, 966, 988, 1142, 1470
XbaI TCTAGA 1 cut(s) 494
XmiI GTMKAC 2 cut(s) 237, 1421
XmnI GAANNNNTTC 3 cut(s) 173, 657, 1173
XspI CTAG 4 cut(s) 495, 884, 1001, 1445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.