Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002272

Physical Location & Seq

Genomic Coordinates Reverse (-)

27705817 .. 27706862

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00104560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGACAGACTCTCTTGTTAACCGCTGGATAAAGATGGTCACCCAATATTACGTGACAGAGTTAAAGCCGTCTATGGGACGAAATTCAGTTTACAAATTTCCTCCTTCTACTTTTGATGTTGGGTTATTAATTCTACTGAGCTTAAGATATTGTATTTTGGACCAACGTAATTCAAGCGGATACAATCTCCTGTTGCCTAAAACAGCTCAGATTCTGGTGGGTCAATTTGAATGGGCTAGTCAGAGGGAGCACCTTTCTAGATGTCCCTCGTGGGAGAGTTTGGATTTGATACACTGTGAAAACATGCAACATGTTGAACTTTGTGATATTCCAAATCTCAAGAATGTTGTGGTCTGCCATTTAGATACTGATGTACCTCACACCTTCAAGATTGAAGCACCCAATCTTGAATCTCTTGTTTATCAGGAGAGGGAAAGGCCATTGGACCTTGAAGCAGTCTGTTGCAGAAATATAAGGGGTTATGGGGGAAGGCTGTTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

167

Amino Acids

19.36

Weight (kDa)

6.19

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26980 FvH4_6g32452 FvH4_6g32461 FvH4_6g32741
prunus_persica	Prupe.3G054600_v2.0.a1 Prupe.3G054700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395301
rosa_laevigata	RLG00000020089 RLG00000020183
rosa_multiflora	Rmu_sc0001483.1_g000030 Rmu_sc0002727.1_g000001 Rmu_sc0005789.1_g000002 Rmu_sc0010454.1_g000003 Rmu_sc0010817.1_g000032 Rmu_sc0035624.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434870 Rroxscaffold_2G00100290 Rroxscaffold_2G00103790 Rroxscaffold_2G00104560
rosa_rugosa	Rorug03G0358200
rosa_samantha	Rh2AG420800 Rh2AG439900 Rh2AG449200 Rh2BG425500 Rh2BG430600 Rh2BG449900 Rh2BG461600 Rh2CG407800 Rh2CG426900 Rh2CG436100 Rh2DG440500 Rh2DG459800 Rh2DG470800 Rh4AG058300 Rh4BG057100 Rh4CG062900 Rh4DG053800 Rh6CG063800 Rh6CG064600 Rh6DG060900 Rh6DG061600
rosa_wichuraiana	Rw2G035990 Rw4G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	22, 177
AcsI	RAATTY	2 cut(s)	82, 95
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflII	CTTAAG	1 cut(s)	142
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	7 cut(s)	174, 230, 317, 388, 395, 410, 452
AluBI	AGCT	2 cut(s)	141, 206
AluI	AGCT	2 cut(s)	141, 206
Alw21I	GWGCWC	1 cut(s)	252
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	1 cut(s)	437
ApoI	RAATTY	2 cut(s)	82, 95
AseI	ATTAAT	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	160, 445
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	160, 445
BaeI	ACNNNNGTAYC	4 cut(s)	357, 357, 390, 390
BauI	CACGAG	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	252
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	52
BciVI	GTATCC	1 cut(s)	173
BfaI	CTAG	3 cut(s)	237, 258, 502
BfrI	CTTAAG	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	173
Bme18I	GGWCC	2 cut(s)	160, 445
BmgT120I	GGNCC	2 cut(s)	160, 445
BpuEI	CTTGAG	1 cut(s)	323
BsaAI	YACGTR	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	128, 221
BshFI	GGCC	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	252
BslFI	GGGAC	2 cut(s)	90, 249
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	90, 249
BsnI	GGCC	1 cut(s)	439
Bsp1286I	GDGCHC	1 cut(s)	252
BspACI	CCGC	2 cut(s)	22, 177
BspANI	GGCC	1 cut(s)	439
BspCNI	CTCAG	2 cut(s)	129, 220
BspTI	CTTAAG	1 cut(s)	142
BssSI	CACGAG	1 cut(s)	268
Bst2BI	CACGAG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	296
BstAFI	CTTAAG	1 cut(s)	142
BstBAI	YACGTR	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	137, 207
BstEII	GGTNACC	1 cut(s)	37
BstNSI	RCATGY	2 cut(s)	307, 314
BstPI	GGTNACC	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	292
CaiI	CAGNNNCTG	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	160, 445
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	2 cut(s)	304, 311
CviJI	RGCY	6 cut(s)	67, 141, 206, 236, 439, 493
CviKI_1	RGCY	6 cut(s)	67, 141, 206, 236, 439, 493
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	2 cut(s)	137, 207
Eco47I	GGWCC	2 cut(s)	160, 445
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
FaeI	CATG	2 cut(s)	307, 314
FaiI	YATR	5 cut(s)	74, 305, 312, 473, 483
FaqI	GGGAC	2 cut(s)	90, 249
FatI	CATG	2 cut(s)	303, 310
FspBI	CTAG	3 cut(s)	237, 258, 502
HaeIII	GGCC	1 cut(s)	439
Hin1II	CATG	2 cut(s)	307, 314
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	3 cut(s)	8, 211, 410
HpaI	GTTAAC	1 cut(s)	19
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	19, 91
Hpy188I	TCNGA	2 cut(s)	210, 243
Hpy188III	TCNNGA	5 cut(s)	258, 340, 388, 407, 425
Hpy8I	GTNNAC	2 cut(s)	19, 91
HpyAV	CCTTC	3 cut(s)	114, 394, 483
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	2 cut(s)	51, 166
HpyCH4V	TGCA	2 cut(s)	307, 465
HpyF3I	CTNAG	2 cut(s)	137, 207
HpySE526I	ACGT	2 cut(s)	51, 166
Hsp92II	CATG	2 cut(s)	307, 314
KspAI	GTTAAC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	4 cut(s)	10, 200, 203, 410
MaeI	CTAG	3 cut(s)	237, 258, 502
MaeII	ACGT	2 cut(s)	51, 166
MaeIII	GTNAC	2 cut(s)	37, 52
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	5 cut(s)	82, 95, 129, 169, 224
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	5 cut(s)	111, 237, 277, 387, 423
MseI	TTAA	4 cut(s)	18, 62, 128, 143
MspA1I	CMGCKG	1 cut(s)	24
MspCI	CTTAAG	1 cut(s)	142
NlaIII	CATG	2 cut(s)	307, 314
NmuCI	GTSAC	2 cut(s)	37, 52
NspI	RCATGY	2 cut(s)	307, 314
PciI	ACATGT	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	211, 410
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
Ppu21I	YACGTR	1 cut(s)	52
PscI	ACATGT	1 cut(s)	310
PshBI	ATTAAT	1 cut(s)	128
PspEI	GGTNACC	1 cut(s)	37
PspPI	GGNCC	2 cut(s)	160, 445
PstNI	CAGNNNCTG	1 cut(s)	214
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SaqAI	TTAA	4 cut(s)	18, 62, 128, 143
Sau96I	GGNCC	2 cut(s)	160, 445
SchI	GAGTC	1 cut(s)	2
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	8 cut(s)	54, 143, 169, 208, 255, 379, 386, 450
SinI	GGWCC	2 cut(s)	160, 445
SmlI	CTYRAG	2 cut(s)	142, 338
SmoI	CTYRAG	2 cut(s)	142, 338
Sse9I	AATT	5 cut(s)	82, 95, 129, 169, 224
SsiI	CCGC	2 cut(s)	22, 177
SspI	AATATT	1 cut(s)	47
SspMI	CTAG	3 cut(s)	237, 258, 502
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	2 cut(s)	54, 169
TasI	AATT	5 cut(s)	82, 95, 129, 169, 224
TfiI	GAWTC	2 cut(s)	211, 410
Tru1I	TTAA	4 cut(s)	18, 62, 128, 143
Tru9I	TTAA	4 cut(s)	18, 62, 128, 143
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	2 cut(s)	37, 52
Tsp45I	GTSAC	2 cut(s)	37, 52
TspRI	CASTG	1 cut(s)	299
Vha464I	CTTAAG	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	160, 445
VspI	ATTAAT	1 cut(s)	128
XapI	RAATTY	2 cut(s)	82, 95
XbaI	TCTAGA	1 cut(s)	257
XceI	RCATGY	2 cut(s)	307, 314
XspI	CTAG	3 cut(s)	237, 258, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.