Rh2AG439900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
65058725 .. 65060517
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG439900.1

Sequence Viewer

Length: 1335 bp
ATGGATCAAATATCTGAGTTGGTGGAACCCCTTATGGGGACACAGCCAGTCGCTGCTTTTAATTTTAACAACTCGGCTTATTTCGGAGGCACAAGAAGGTCCCGAAAGAAGTTTGTGACTTTTGTTGATGATTCCTTGGAAAGAAACCTCCCTGAGCATGAAGACCAGAAAAAGTTCGTTCAGTTCTCGTTGGCTATTGCAACCCTTGACAGCAAGCTGAAAGACTCTGATGTTGTCGACCGCTGGATAAAGATGGTTACCAAACACTATGTGACAGAGTTAAAACTCCGGATCAAAAACGCACCAAAGATTAGGTACCAATTTCCCCCGGCTGCTTTTGATGTTGGGCAATTAGTTGTACTGGAGCTAATGCATTGTACTTTGGAGAAAGCCTTTATTCAAGAGGATACTATGTTTCTTCCAATTCTTCGGTTAAAAGAGCTCAGATTCAGTCATGTCAATTTCAATGGGGTAGTCGTCGGGGAGCTGCTGTCTAGATGCCCTTTGCTTGAGACTTTGGCATTACGCTCCTGTGGAAACATAAAACATCTCGAACTTTGTGATTTTCCAAATCTCAAGAATGTTGAACTTTGGAATGATTCAGATGATGATGATGATATTTTTACCTACAAGATTGACTCACCCGATCTCAAATCTCTTCTTTATTTGGAGTATGGAAAGTCAATGGACATCGAAGCAGTCACTTGCAAAAATTTAAAGACGCTGCATATAGTTACTCATGGCTCTACCATTACGGACCAATATATCAAGGAAGTCAATTCCAAATTTCCTTTTCTTGAAACCTTGATACTGAATGCCGGATCTTTTGGATCAAAAGATGCTGATGAGATTAGTATTTCGGGTCATAACCTCAATTCACTGCTAGTTTGTGGACATATTTGCAAACATACGATCATCAATATAGATGCACCAAATCTTCTTAGTTACCAACGCGAGGGTGACGAAATTCCTCCCTCGTTTTCGTTGAATTCTGTGAAGCTAGAATGGGCTAACTTTATTGTACCTGGAGCTCATCTCAACAGTGCATGGTTTATTAAATTGCGAGAATATCTGGGAAAGTTTAAGGGTTGTGATCATCTTCGCTTCAGAATATGTCATAAGCAGCCTTGCAAGACAGTCAAATTTTCTTTTGACGAATTACAAGAAGAAAAACTTCCTCCCCTGCCAAAGGTCAGGCAATTGGTTCTGAAAAATGTTCCACCATCGAGCGACTATACAACTCTTATCGATGGCTTACTTTGGAGTTGCCATCCACTCACCATATCAGTACAAGCACGCGGTGCACCTAACCGTAAATTTATAAAGGTCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

444

Amino Acids

50.63

Weight (kDa)

6.91

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 64 - 273 2e-14 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 79 - 248 7.1e-16 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1322
Acc65I GGTACC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 315
AccI GTMKAC 1 cut(s) 237
AccII CGCG 2 cut(s) 954, 1299
AccIII TCCGGA 1 cut(s) 288
AciI CCGC 2 cut(s) 241, 1299
AclWI GGATC 4 cut(s) 12, 299, 829, 838
AcsI RAATTY 6 cut(s) 712, 785, 966, 988, 1142, 1316
AcuI CTGAAG 1 cut(s) 1090
AdeI CACNNNGTG 2 cut(s) 271, 1301
AfaI GTAC 5 cut(s) 317, 360, 379, 1023, 1290
AfiI CCNNNNNNNGG 4 cut(s) 35, 36, 955, 1189
AgsI TTSAA 5 cut(s) 401, 466, 587, 800, 988
AjnI CCWGG 1 cut(s) 1024
AluBI AGCT 6 cut(s) 217, 367, 442, 487, 1000, 1031
AluI AGCT 6 cut(s) 217, 367, 442, 487, 1000, 1031
Alw21I GWGCWC 3 cut(s) 444, 1033, 1306
Alw26I GTCTC 1 cut(s) 506
Alw44I GTGCAC 1 cut(s) 1302
AlwI GGATC 4 cut(s) 12, 299, 829, 838
AlwNI CAGNNNCTG 1 cut(s) 53
Aor13HI TCCGGA 1 cut(s) 288
ApaLI GTGCAC 1 cut(s) 1302
ApeKI GCWGC 5 cut(s) 53, 332, 487, 724, 1123
ApoI RAATTY 6 cut(s) 712, 785, 966, 988, 1142, 1316
Asp700I GAANNNNTTC 2 cut(s) 173, 1173
Asp718I GGTACC 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 99, 757
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 3 cut(s) 633, 971, 1270
AvaII GGWCC 2 cut(s) 99, 757
BaeGI GKGCMC 1 cut(s) 1306
BanI GGYRCC 1 cut(s) 315
BanII GRGCYC 2 cut(s) 444, 1033
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 3 cut(s) 444, 1033, 1306
BbvI GCAGC 5 cut(s) 40, 319, 474, 711, 1135
BccI CCATC 4 cut(s) 247, 1231, 1244, 1278
BciT130I CCWGG 1 cut(s) 1026
BciVI GTATCC 1 cut(s) 400
BclI TGATCA 1 cut(s) 1093
BcnI CCSGG 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 3 cut(s) 495, 884, 1001
BfuI GTATCC 1 cut(s) 400
BisI GCNGC 5 cut(s) 54, 333, 488, 725, 1124
BlsI GCNGC 5 cut(s) 55, 334, 489, 726, 1125
Bme1390I CCNGG 2 cut(s) 329, 1026
Bme18I GGWCC 2 cut(s) 99, 757
BmgT120I GGNCC 2 cut(s) 99, 757
BmiI GGNNCC 3 cut(s) 27, 101, 317
BmrFI CCNGG 2 cut(s) 329, 1026
BmsI GCATC 3 cut(s) 488, 829, 916
BpiI GAAGAC 1 cut(s) 168
BplI GAGNNNNNCTC 2 cut(s) 1020, 1052
BpmI CTGGAG 2 cut(s) 383, 1047
Bpu10I CCTNAGC 1 cut(s) 153
BpuEI CTTGAG 2 cut(s) 530, 560
BpuMI CCSGG 1 cut(s) 329
Bsa29I ATCGAT 1 cut(s) 1248
BsaJI CCNNGG 2 cut(s) 135, 327
BsaWI WCCGGW 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 36, 955, 1189
Bse1I ACTGG 2 cut(s) 47, 366
BseAI TCCGGA 1 cut(s) 288
BseBI CCWGG 1 cut(s) 1026
BseCI ATCGAT 1 cut(s) 1248
BseDI CCNNGG 2 cut(s) 135, 327
BseGI GGATG 1 cut(s) 1270
BseLI CCNNNNNNNGG 4 cut(s) 35, 36, 955, 1189
BseMII CTCAG 3 cut(s) 6, 144, 457
BseNI ACTGG 2 cut(s) 47, 366
BseSI GKGCMC 1 cut(s) 1306
BseXI GCAGC 5 cut(s) 40, 319, 474, 711, 1135
Bsh1236I CGCG 2 cut(s) 954, 1299
Bsh1285I CGRYCG 1 cut(s) 241
BshNI GGYRCC 1 cut(s) 315
BshVI ATCGAT 1 cut(s) 1248
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 3 cut(s) 444, 1033, 1306
BsiSI CCGG 3 cut(s) 289, 329, 819
BslFI GGGAC 2 cut(s) 52, 85
BslI CCNNNNNNNGG 4 cut(s) 35, 36, 955, 1189
BsmAI GTCTC 1 cut(s) 506
BsmFI GGGAC 2 cut(s) 52, 85
BsmI GAATGC 1 cut(s) 820
Bsp1286I GDGCHC 3 cut(s) 444, 1033, 1306
Bsp13I TCCGGA 1 cut(s) 288
Bsp143I GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
BspACI CCGC 2 cut(s) 241, 1299
BspCNI CTCAG 3 cut(s) 7, 145, 456
BspDI ATCGAT 1 cut(s) 1248
BspEI TCCGGA 1 cut(s) 288
BspFNI CGCG 2 cut(s) 954, 1299
BspLI GGNNCC 3 cut(s) 27, 101, 317
BspPI GGATC 4 cut(s) 12, 299, 829, 838
BspT107I GGYRCC 1 cut(s) 315
BsrI ACTGG 2 cut(s) 47, 366
BssECI CCNNGG 2 cut(s) 135, 327
BssMI GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 1026
Bst4CI ACNGT 3 cut(s) 1043, 1138, 1313
Bst6I CTCTTC 1 cut(s) 663
BstAPI GCANNNNNTGC 1 cut(s) 1301
BstC8I GCNNGC 2 cut(s) 215, 1297
BstDEI CTNAG 4 cut(s) 15, 153, 443, 941
BstEII GGTNACC 1 cut(s) 256
BstENI CCTNNNNNAGG 1 cut(s) 1187
BstF5I GGATG 1 cut(s) 1270
BstFNI CGCG 2 cut(s) 954, 1299
BstKTI GATC 7 cut(s) 7, 294, 649, 824, 833, 915, 1096
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 1301
BstNI CCWGG 1 cut(s) 1026
BstPI GGTNACC 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 327, 1024
BstSLI GKGCMC 1 cut(s) 1306
BstUI CGCG 2 cut(s) 954, 1299
BstV1I GCAGC 5 cut(s) 40, 319, 474, 711, 1135
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 821
BstYI RGATCY 1 cut(s) 821
Bsu15I ATCGAT 1 cut(s) 1248
BsuI GTATCC 1 cut(s) 400
BsuTUI ATCGAT 1 cut(s) 1248
BtsCI GGATG 1 cut(s) 1270
BtsI GCAGTG 1 cut(s) 878
BtsIMutI CAGTG 2 cut(s) 878, 1048
Cac8I GCNNGC 2 cut(s) 215, 1297
CaiI CAGNNNCTG 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 99, 757
ClaI ATCGAT 1 cut(s) 1248
CseI GACGC 1 cut(s) 730
Csp6I GTAC 5 cut(s) 316, 359, 378, 1022, 1289
CviAII CATG 4 cut(s) 158, 455, 740, 1047
CviQI GTAC 5 cut(s) 316, 359, 378, 1022, 1289
DdeI CTNAG 4 cut(s) 15, 153, 443, 941
DpnI GATC 7 cut(s) 6, 293, 648, 823, 832, 914, 1095
DpnII GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
DraI TTTAAA 1 cut(s) 717
DraIII CACNNNGTG 2 cut(s) 271, 1301
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Ecl136II GAGCTC 2 cut(s) 442, 1031
Eco130I CCWWGG 1 cut(s) 135
Eco24I GRGCYC 2 cut(s) 444, 1033
Eco47I GGWCC 2 cut(s) 99, 757
Eco53kI GAGCTC 2 cut(s) 442, 1031
Eco57I CTGAAG 1 cut(s) 1090
Eco91I GGTNACC 1 cut(s) 256
EcoICRI GAGCTC 2 cut(s) 442, 1031
EcoNI CCTNNNNNAGG 1 cut(s) 1187
EcoO109I RGGNCCY 1 cut(s) 99
EcoO65I GGTNACC 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 988
EcoRII CCWGG 1 cut(s) 1024
EcoT14I CCWWGG 1 cut(s) 135
EcoT22I ATGCAT 1 cut(s) 375
EcoT38I GRGCYC 2 cut(s) 444, 1033
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 4 cut(s) 161, 458, 743, 1050
FalI AAGNNNNNCTT 2 cut(s) 1158, 1190
FaqI GGGAC 2 cut(s) 52, 85
FatI CATG 4 cut(s) 157, 454, 739, 1046
FbaI TGATCA 1 cut(s) 1093
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 5 cut(s) 54, 333, 488, 725, 1124
FokI GGATG 1 cut(s) 1257
FriOI GRGCYC 2 cut(s) 444, 1033
Fsp4HI GCNGC 5 cut(s) 54, 333, 488, 725, 1124
FspBI CTAG 3 cut(s) 495, 884, 1001
GluI GCNGC 5 cut(s) 54, 333, 488, 725, 1124
GsuI CTGGAG 2 cut(s) 383, 1047
HapII CCGG 3 cut(s) 289, 329, 819
HgaI GACGC 1 cut(s) 730
Hin1II CATG 4 cut(s) 161, 458, 743, 1050
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 5 cut(s) 131, 224, 447, 599, 638
HpaII CCGG 3 cut(s) 289, 329, 819
HphI GGTGA 3 cut(s) 633, 971, 1270
Hpy166II GTNNAC 3 cut(s) 238, 893, 1304
Hpy188I TCNGA 7 cut(s) 16, 86, 229, 446, 604, 1109, 1209
Hpy188III TCNNGA 7 cut(s) 102, 289, 401, 495, 551, 577, 797
Hpy8I GTNNAC 3 cut(s) 238, 893, 1304
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 3 cut(s) 1043, 1138, 1313
HpyCH4V TGCA 9 cut(s) 200, 373, 708, 727, 903, 929, 1046, 1131, 1304
HpyF10VI GCNNNNNNNGC 1 cut(s) 1301
HpyF3I CTNAG 4 cut(s) 15, 153, 443, 941
Hsp92II CATG 4 cut(s) 161, 458, 743, 1050
Kpn2I TCCGGA 1 cut(s) 288
KpnI GGTACC 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 1093
Kzo9I GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
LmnI GCTCC 4 cut(s) 364, 484, 533, 1028
Lsp1109I GCAGC 5 cut(s) 40, 319, 474, 711, 1135
LweI GCATC 3 cut(s) 488, 829, 916
MaeI CTAG 3 cut(s) 495, 884, 1001
MaeIII GTNAC 7 cut(s) 115, 256, 271, 700, 733, 944, 959
MalI GATC 7 cut(s) 6, 293, 648, 823, 832, 914, 1095
MboI GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
MboII GAAGA 7 cut(s) 173, 410, 419, 650, 929, 1091, 1178
MfeI CAATTG 1 cut(s) 1199
MflI RGATCY 1 cut(s) 821
MhlI GDGCHC 3 cut(s) 444, 1033, 1306
MlyI GAGTC 2 cut(s) 218, 632
MnlI CCTC 8 cut(s) 80, 158, 397, 881, 949, 981, 985, 1188
Mph1103I ATGCAT 1 cut(s) 375
MroI TCCGGA 1 cut(s) 288
MroXI GAANNNNTTC 2 cut(s) 173, 1173
MseI TTAA 7 cut(s) 60, 66, 281, 434, 716, 1056, 1083
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 3 cut(s) 289, 329, 819
MspR9I CCNGG 2 cut(s) 329, 1026
MunI CAATTG 1 cut(s) 1199
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 1 cut(s) 1026
MvnI CGCG 2 cut(s) 954, 1299
MwoI GCNNNNNNNGC 1 cut(s) 1301
NciI CCSGG 1 cut(s) 329
NdeII GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
NlaIII CATG 4 cut(s) 161, 458, 743, 1050
NlaIV GGNNCC 3 cut(s) 27, 101, 317
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 4 cut(s) 115, 271, 700, 959
NsiI ATGCAT 1 cut(s) 375
PctI GAATGC 1 cut(s) 820
PdmI GAANNNNTTC 2 cut(s) 173, 1173
PfeI GAWTC 3 cut(s) 131, 447, 599
PkrI GCNGC 5 cut(s) 55, 334, 489, 726, 1125
PleI GAGTC 2 cut(s) 218, 632
PpsI GAGTC 2 cut(s) 218, 632
PpuMI RGGWCCY 1 cut(s) 99
PsiI TTATAA 1 cut(s) 1322
Psp124BI GAGCTC 2 cut(s) 444, 1033
Psp5II RGGWCCY 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 1024
PspEI GGTNACC 1 cut(s) 256
PspGI CCWGG 1 cut(s) 1024
PspN4I GGNNCC 3 cut(s) 27, 101, 317
PspPI GGNCC 2 cut(s) 99, 757
PspPPI RGGWCCY 1 cut(s) 99
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 821
RsaI GTAC 5 cut(s) 317, 360, 379, 1023, 1290
RsaNI GTAC 5 cut(s) 316, 359, 378, 1022, 1289
SacI GAGCTC 2 cut(s) 444, 1033
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 7 cut(s) 60, 66, 281, 434, 716, 1056, 1083
SatI GCNGC 5 cut(s) 54, 333, 488, 725, 1124
Sau3AI GATC 7 cut(s) 4, 291, 646, 821, 830, 912, 1093
Sau96I GGNCC 2 cut(s) 99, 757
SchI GAGTC 2 cut(s) 218, 632
ScrFI CCNGG 2 cut(s) 329, 1026
SduI GDGCHC 3 cut(s) 444, 1033, 1306
SfaNI GCATC 3 cut(s) 488, 829, 916
SinI GGWCC 2 cut(s) 99, 757
SmlI CTYRAG 2 cut(s) 509, 575
SmoI CTYRAG 2 cut(s) 509, 575
SsiI CCGC 2 cut(s) 241, 1299
SspMI CTAG 3 cut(s) 495, 884, 1001
SstI GAGCTC 2 cut(s) 444, 1033
StyD4I CCNGG 2 cut(s) 327, 1024
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 3 cut(s) 1043, 1138, 1313
TaqI TCGA 5 cut(s) 237, 552, 693, 1226, 1248
TatI WGTACW 3 cut(s) 358, 377, 1288
TfiI GAWTC 3 cut(s) 131, 447, 599
Tru1I TTAA 7 cut(s) 60, 66, 281, 434, 716, 1056, 1083
Tru9I TTAA 7 cut(s) 60, 66, 281, 434, 716, 1056, 1083
TscAI CASTG 2 cut(s) 885, 1048
TseFI GTSAC 4 cut(s) 115, 271, 700, 959
TseI GCWGC 5 cut(s) 53, 332, 487, 724, 1123
Tsp45I GTSAC 4 cut(s) 115, 271, 700, 959
TspDTI ATGAA 1 cut(s) 174
TspGWI ACGGA 1 cut(s) 770
TspRI CASTG 2 cut(s) 885, 1048
VneI GTGCAC 1 cut(s) 1302
VpaK11BI GGWCC 2 cut(s) 99, 757
XagI CCTNNNNNAGG 1 cut(s) 1187
XapI RAATTY 6 cut(s) 712, 785, 966, 988, 1142, 1316
XbaI TCTAGA 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 237
XmnI GAANNNNTTC 2 cut(s) 173, 1173
XspI CTAG 3 cut(s) 495, 884, 1001
Zsp2I ATGCAT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.