Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002272

Physical Location & Seq

Genomic Coordinates Forward (+)

66415991 .. 66418583

Gene Structure 2593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG459800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGTTACCAAACACTATGTGACAGAGTTAAAACTCCGGATAAAAAACGCACCAAAGATTAGGTACCAATTTCCCCCTGCTGCTTTTGATGTTGGGCAATTAGTTGTACTGGAGCTAATGCACTGTACTTTGGAGAAAGCCTTTATTCAAGAGGATACCATGTTTCTTCCAATTCTTCGGTTAAAAGAGCTCAGATTCAGTCATGTCCATTTCAATGGGGTAGTCGTCGGGGAGCTGCTGTCTAGATGCCCTTTGCTTGAGACTTTGGCATTACGCTCCTGTGGAAACATAAAACATCTCGAACTTTGTGATTTTCCAAATCTCAAGAATGTTGAACTTTGGAATGATTCAGATGATGATGATGATATTTTTACCTACAAGATTGACTCACCCGATCTTGAATCTCTTCTTTATTTGGAGTATGGAAAGTCAATGGACATCGAAGCAGTCACTTGCGAAAATTTAAAGACGCTGCATATAGTTACTCATGGCTCTACCATTACGGACCAATATATCAAGGAAGTCAATTCCAAATTTCCTTTTCTTGAAACCTTGATACTGAATGCCAGATCTTTTGGATCAAAAGATGCTGATGAGATTACTATTTCGGGTCATAACCTCAATTCACTGCTAGTTTGTGGACATATTTGCAAACATATGATCATCAATATAGATGCACCAAATCTTCTTAGTTACCAACGCGAGGGTGACGAAATTCCTCCCTCGTTTTCGTTGAATTCTGTGAAGCTAGAATGGGCTAACTTTATTGTACCTGGAGCTCATCTCAACAGTGCATGGTTTATTAAATTGCGAGAATATCTGGGAAAGTTTAAGGGTTGTGATCATCTTCGCTTCAGAATATGTCATAAGCAGCCTTGCAAGACAGTCAAATTTTCTTTTGACGAATTACAAGAAGAAAAACTTCCTCCCCTGCCAAAGGTCAGGCAATTGGTTCTGAAAAATGTTCCACCATTGAGAGACTATACAACTCTTATCGATGGCTTACTTTGGAGTTGCCATCCACTCACCATATCAGTACAAGCACGCGGTGCACCTAACCGTAAATTTATAAAGGAATTAACCAAGTTGAGGATTATTGATATTCAAGGGATTCAGAAACCAGAACCTGTAGTCACCGAAAAACTTTTATATGCACCTGGTAAGAAGCCAGAAAAGGCTGCAGTTGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

397

Amino Acids

45.28

Weight (kDa)

7.2

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	3 - 190	2.3e-10	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	5 - 164	4.1e-14	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26980 FvH4_6g32452 FvH4_6g32461 FvH4_6g32741
prunus_persica	Prupe.3G054600_v2.0.a1 Prupe.3G054700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395301
rosa_laevigata	RLG00000020089 RLG00000020183
rosa_multiflora	Rmu_sc0001483.1_g000030 Rmu_sc0002727.1_g000001 Rmu_sc0005789.1_g000002 Rmu_sc0010454.1_g000003 Rmu_sc0010817.1_g000032 Rmu_sc0035624.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434870 Rroxscaffold_2G00100290 Rroxscaffold_2G00103790 Rroxscaffold_2G00104560
rosa_rugosa	Rorug03G0358200
rosa_samantha	Rh2AG420800 Rh2AG439900 Rh2AG449200 Rh2BG425500 Rh2BG430600 Rh2BG449900 Rh2BG461600 Rh2CG407800 Rh2CG426900 Rh2CG436100 Rh2DG440500 Rh2DG459800 Rh2DG470800 Rh4AG058300 Rh4BG057100 Rh4CG062900 Rh4DG053800 Rh6CG063800 Rh6CG064600 Rh6DG060900 Rh6DG061600
rosa_wichuraiana	Rw2G035990 Rw4G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1070
Acc65I	GGTACC	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	63
AccII	CGCG	2 cut(s)	702, 1047
AccIII	TCCGGA	1 cut(s)	36
AciI	CCGC	1 cut(s)	1047
AclWI	GGATC	1 cut(s)	586
AcsI	RAATTY	6 cut(s)	460, 533, 714, 736, 890, 1064
AcuI	CTGAAG	1 cut(s)	838
AdeI	CACNNNGTG	2 cut(s)	19, 1049
AfaI	GTAC	5 cut(s)	65, 108, 127, 771, 1038
AfiI	CCNNNNNNNGG	3 cut(s)	703, 937, 1089
AgsI	TTSAA	7 cut(s)	149, 214, 335, 401, 548, 736, 1106
AjnI	CCWGG	2 cut(s)	772, 1156
AluBI	AGCT	5 cut(s)	115, 190, 235, 748, 779
AluI	AGCT	5 cut(s)	115, 190, 235, 748, 779
Alw21I	GWGCWC	3 cut(s)	192, 781, 1054
Alw26I	GTCTC	2 cut(s)	254, 972
Alw44I	GTGCAC	1 cut(s)	1050
AlwI	GGATC	1 cut(s)	586
AlwNI	CAGNNNCTG	2 cut(s)	1127, 1187
Aor13HI	TCCGGA	1 cut(s)	36
ApaLI	GTGCAC	1 cut(s)	1050
ApeKI	GCWGC	6 cut(s)	80, 235, 472, 871, 1178, 1187
ApoI	RAATTY	6 cut(s)	460, 533, 714, 736, 890, 1064
Asp700I	GAANNNNTTC	2 cut(s)	405, 921
Asp718I	GGTACC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	4 cut(s)	381, 719, 1018, 1126
AvaII	GGWCC	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	1054
BanI	GGYRCC	1 cut(s)	63
BanII	GRGCYC	2 cut(s)	192, 781
Bbv12I	GWGCWC	3 cut(s)	192, 781, 1054
BbvI	GCAGC	6 cut(s)	67, 222, 459, 883, 1165, 1174
BccI	CCATC	2 cut(s)	992, 1026
BciT130I	CCWGG	2 cut(s)	774, 1158
BciVI	GTATCC	1 cut(s)	148
BclI	TGATCA	2 cut(s)	660, 841
BcoDI	GTCTC	2 cut(s)	254, 972
BfaI	CTAG	3 cut(s)	243, 632, 749
BfmI	CTRYAG	2 cut(s)	1128, 1179
BfuI	GTATCC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	569
BisI	GCNGC	6 cut(s)	81, 236, 473, 872, 1179, 1188
BlsI	GCNGC	6 cut(s)	82, 237, 474, 873, 1180, 1189
Bme1390I	CCNGG	2 cut(s)	774, 1158
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	2 cut(s)	774, 1158
BmsI	GCATC	3 cut(s)	236, 577, 664
BplI	GAGNNNNNCTC	2 cut(s)	768, 800
BpmI	CTGGAG	2 cut(s)	131, 795
BpuEI	CTTGAG	2 cut(s)	278, 308
Bsa29I	ATCGAT	1 cut(s)	996
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	3 cut(s)	703, 937, 1089
Bse1I	ACTGG	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	774, 1158
BseCI	ATCGAT	1 cut(s)	996
BseGI	GGATG	1 cut(s)	1018
BseLI	CCNNNNNNNGG	3 cut(s)	703, 937, 1089
BseMII	CTCAG	1 cut(s)	205
BseNI	ACTGG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	1054
BseXI	GCAGC	6 cut(s)	67, 222, 459, 883, 1165, 1174
Bsh1236I	CGCG	2 cut(s)	702, 1047
BshNI	GGYRCC	1 cut(s)	63
BshVI	ATCGAT	1 cut(s)	996
BsiHKAI	GWGCWC	3 cut(s)	192, 781, 1054
BsiSI	CCGG	1 cut(s)	37
BslI	CCNNNNNNNGG	3 cut(s)	703, 937, 1089
BsmAI	GTCTC	2 cut(s)	254, 972
BsmI	GAATGC	1 cut(s)	568
Bsp1286I	GDGCHC	3 cut(s)	192, 781, 1054
Bsp13I	TCCGGA	1 cut(s)	36
Bsp143I	GATC	5 cut(s)	394, 569, 578, 660, 841
BspACI	CCGC	1 cut(s)	1047
BspCNI	CTCAG	1 cut(s)	204
BspDI	ATCGAT	1 cut(s)	996
BspEI	TCCGGA	1 cut(s)	36
BspFNI	CGCG	2 cut(s)	702, 1047
BspLI	GGNNCC	1 cut(s)	65
BspMAI	CTGCAG	1 cut(s)	1183
BspPI	GGATC	1 cut(s)	586
BspT107I	GGYRCC	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	114
BssMI	GATC	5 cut(s)	394, 569, 578, 660, 841
Bst2UI	CCWGG	2 cut(s)	774, 1158
Bst4CI	ACNGT	4 cut(s)	125, 791, 886, 1061
Bst6I	CTCTTC	1 cut(s)	411
BstAPI	GCANNNNNTGC	2 cut(s)	1049, 1187
BstC8I	GCNNGC	1 cut(s)	1045
BstDEI	CTNAG	2 cut(s)	191, 689
BstEII	GGTNACC	1 cut(s)	4
BstENI	CCTNNNNNAGG	1 cut(s)	935
BstF5I	GGATG	1 cut(s)	1018
BstFNI	CGCG	2 cut(s)	702, 1047
BstKTI	GATC	5 cut(s)	397, 572, 581, 663, 844
BstMAI	GTCTC	2 cut(s)	254, 972
BstMBI	GATC	5 cut(s)	394, 569, 578, 660, 841
BstMWI	GCNNNNNNNGC	3 cut(s)	1049, 1184, 1187
BstNI	CCWGG	2 cut(s)	774, 1158
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	2 cut(s)	772, 1156
BstSFI	CTRYAG	2 cut(s)	1128, 1179
BstSLI	GKGCMC	1 cut(s)	1054
BstUI	CGCG	2 cut(s)	702, 1047
BstV1I	GCAGC	6 cut(s)	67, 222, 459, 883, 1165, 1174
BstX2I	RGATCY	1 cut(s)	569
BstXI	CCANNNNNNTGG	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	569
Bsu15I	ATCGAT	1 cut(s)	996
BsuI	GTATCC	1 cut(s)	148
BsuTUI	ATCGAT	1 cut(s)	996
BtsCI	GGATG	1 cut(s)	1018
BtsI	GCAGTG	1 cut(s)	626
BtsIMutI	CAGTG	3 cut(s)	121, 626, 796
Cac8I	GCNNGC	1 cut(s)	1045
CaiI	CAGNNNCTG	2 cut(s)	1127, 1187
Cfr13I	GGNCC	1 cut(s)	505
ClaI	ATCGAT	1 cut(s)	996
CseI	GACGC	1 cut(s)	478
CsiI	ACCWGGT	1 cut(s)	1156
Csp6I	GTAC	5 cut(s)	64, 107, 126, 770, 1037
CviAII	CATG	4 cut(s)	160, 203, 488, 795
CviQI	GTAC	5 cut(s)	64, 107, 126, 770, 1037
DdeI	CTNAG	2 cut(s)	191, 689
DpnI	GATC	5 cut(s)	396, 571, 580, 662, 843
DpnII	GATC	5 cut(s)	394, 569, 578, 660, 841
DraI	TTTAAA	1 cut(s)	465
DraIII	CACNNNGTG	2 cut(s)	19, 1049
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	2 cut(s)	190, 779
Eco24I	GRGCYC	2 cut(s)	192, 781
Eco47I	GGWCC	1 cut(s)	505
Eco53kI	GAGCTC	2 cut(s)	190, 779
Eco57I	CTGAAG	1 cut(s)	838
Eco91I	GGTNACC	1 cut(s)	4
EcoICRI	GAGCTC	2 cut(s)	190, 779
EcoNI	CCTNNNNNAGG	1 cut(s)	935
EcoO65I	GGTNACC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	736
EcoRII	CCWGG	2 cut(s)	772, 1156
EcoT38I	GRGCYC	2 cut(s)	192, 781
FaeI	CATG	4 cut(s)	163, 206, 491, 798
FalI	AAGNNNNNCTT	2 cut(s)	906, 938
FatI	CATG	4 cut(s)	159, 202, 487, 794
FauNDI	CATATG	1 cut(s)	657
FbaI	TGATCA	2 cut(s)	660, 841
Fnu4HI	GCNGC	6 cut(s)	81, 236, 473, 872, 1179, 1188
FokI	GGATG	1 cut(s)	1005
FriOI	GRGCYC	2 cut(s)	192, 781
Fsp4HI	GCNGC	6 cut(s)	81, 236, 473, 872, 1179, 1188
FspBI	CTAG	3 cut(s)	243, 632, 749
GluI	GCNGC	6 cut(s)	81, 236, 473, 872, 1179, 1188
GsuI	CTGGAG	2 cut(s)	131, 795
HapII	CCGG	1 cut(s)	37
HgaI	GACGC	1 cut(s)	478
Hin1II	CATG	4 cut(s)	163, 206, 491, 798
HinfI	GANTC	5 cut(s)	195, 347, 386, 401, 1111
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	4 cut(s)	381, 719, 1018, 1126
Hpy166II	GTNNAC	2 cut(s)	641, 1052
Hpy188I	TCNGA	5 cut(s)	194, 352, 857, 957, 1116
Hpy188III	TCNNGA	7 cut(s)	37, 149, 243, 299, 325, 398, 545
Hpy8I	GTNNAC	2 cut(s)	641, 1052
Hpy99I	CGWCG	1 cut(s)	230
HpyCH4III	ACNGT	4 cut(s)	125, 791, 886, 1061
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1049, 1184, 1187
HpyF3I	CTNAG	2 cut(s)	191, 689
Hsp92II	CATG	4 cut(s)	163, 206, 491, 798
Kpn2I	TCCGGA	1 cut(s)	36
KpnI	GGTACC	1 cut(s)	67
Ksp22I	TGATCA	2 cut(s)	660, 841
Kzo9I	GATC	5 cut(s)	394, 569, 578, 660, 841
LmnI	GCTCC	4 cut(s)	112, 232, 281, 776
Lsp1109I	GCAGC	6 cut(s)	67, 222, 459, 883, 1165, 1174
LweI	GCATC	3 cut(s)	236, 577, 664
MabI	ACCWGGT	1 cut(s)	1156
MaeI	CTAG	3 cut(s)	243, 632, 749
MaeIII	GTNAC	7 cut(s)	4, 19, 448, 481, 692, 707, 1132
MalI	GATC	5 cut(s)	396, 571, 580, 662, 843
MboI	GATC	5 cut(s)	394, 569, 578, 660, 841
MboII	GAAGA	6 cut(s)	158, 167, 398, 677, 839, 926
MfeI	CAATTG	1 cut(s)	947
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	3 cut(s)	192, 781, 1054
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	7 cut(s)	145, 629, 697, 729, 733, 936, 1083
MroI	TCCGGA	1 cut(s)	36
MroXI	GAANNNNTTC	2 cut(s)	405, 921
MseI	TTAA	6 cut(s)	29, 182, 464, 804, 831, 1079
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	1 cut(s)	37
MspR9I	CCNGG	2 cut(s)	774, 1158
MunI	CAATTG	1 cut(s)	947
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	2 cut(s)	774, 1158
MvnI	CGCG	2 cut(s)	702, 1047
MwoI	GCNNNNNNNGC	3 cut(s)	1049, 1184, 1187
NdeI	CATATG	1 cut(s)	657
NdeII	GATC	5 cut(s)	394, 569, 578, 660, 841
NlaIII	CATG	4 cut(s)	163, 206, 491, 798
NlaIV	GGNNCC	1 cut(s)	65
NmuCI	GTSAC	4 cut(s)	19, 448, 707, 1132
PctI	GAATGC	1 cut(s)	568
PdmI	GAANNNNTTC	2 cut(s)	405, 921
PfeI	GAWTC	4 cut(s)	195, 347, 401, 1111
PkrI	GCNGC	6 cut(s)	82, 237, 474, 873, 1180, 1189
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PsiI	TTATAA	1 cut(s)	1070
Psp124BI	GAGCTC	2 cut(s)	192, 781
Psp6I	CCWGG	2 cut(s)	772, 1156
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	2 cut(s)	772, 1156
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	505
PstI	CTGCAG	1 cut(s)	1183
PstNI	CAGNNNCTG	2 cut(s)	1127, 1187
PsuI	RGATCY	1 cut(s)	569
RsaI	GTAC	5 cut(s)	65, 108, 127, 771, 1038
RsaNI	GTAC	5 cut(s)	64, 107, 126, 770, 1037
RseI	CAYNNNNRTG	1 cut(s)	213
SacI	GAGCTC	2 cut(s)	192, 781
SaqAI	TTAA	6 cut(s)	29, 182, 464, 804, 831, 1079
SatI	GCNGC	6 cut(s)	81, 236, 473, 872, 1179, 1188
Sau3AI	GATC	5 cut(s)	394, 569, 578, 660, 841
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	774, 1158
SduI	GDGCHC	3 cut(s)	192, 781, 1054
SexAI	ACCWGGT	1 cut(s)	1156
SfaNI	GCATC	3 cut(s)	236, 577, 664
SfcI	CTRYAG	2 cut(s)	1128, 1179
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	257, 323
SmoI	CTYRAG	2 cut(s)	257, 323
SsiI	CCGC	1 cut(s)	1047
SspMI	CTAG	3 cut(s)	243, 632, 749
SstI	GAGCTC	2 cut(s)	192, 781
StyD4I	CCNGG	2 cut(s)	772, 1156
TaaI	ACNGT	4 cut(s)	125, 791, 886, 1061
TaqI	TCGA	3 cut(s)	300, 441, 996
TatI	WGTACW	3 cut(s)	106, 125, 1036
TfiI	GAWTC	4 cut(s)	195, 347, 401, 1111
Tru1I	TTAA	6 cut(s)	29, 182, 464, 804, 831, 1079
Tru9I	TTAA	6 cut(s)	29, 182, 464, 804, 831, 1079
TscAI	CASTG	3 cut(s)	128, 633, 796
TseFI	GTSAC	4 cut(s)	19, 448, 707, 1132
TseI	GCWGC	6 cut(s)	80, 235, 472, 871, 1178, 1187
Tsp45I	GTSAC	4 cut(s)	19, 448, 707, 1132
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	3 cut(s)	128, 633, 796
VneI	GTGCAC	1 cut(s)	1050
VpaK11BI	GGWCC	1 cut(s)	505
XagI	CCTNNNNNAGG	1 cut(s)	935
XapI	RAATTY	6 cut(s)	460, 533, 714, 736, 890, 1064
XbaI	TCTAGA	1 cut(s)	242
XmnI	GAANNNNTTC	2 cut(s)	405, 921
XspI	CTAG	3 cut(s)	243, 632, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.