Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002272

Physical Location & Seq

Genomic Coordinates Forward (+)

60002147 .. 60002928

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG425500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGACAGACTCTGGTGTTGACCACTGGATGAAGATGGTCACCCAATATTACGTGACAGAGTTAAAGCTGTCTATGGGACGATATTCAGTTTACAAATTTCCTCCTTCTACTTTTGATGTTGGGTCATTGGTTTTACTGAGCTTAAGATATTGTATTTTGGACCAACGTAATTCAAAAGGATACAATCTCCTGTTGCCTAAAACAGCTCAGATTCTGGTGGTCAATTTGAATGGGCTATTCAGGGAGCTCCTTTCTAGATGCCCCTCGCGGGAGAGTTTGGATTTGATACACTGTGAAAACATGCAACATGTTGAACTTTGTGATATTCCAAATCTCAAGAATGTTGTGGTCTGCCATTTAGATACTGATGTACCTCACACCTTCAAGATTGAGGCACCCAATCTTGAATCTCTTTTTTATCAAGAGAGGGAAAGGCCATTGGACCTTGAAGCAGTCTGTTGCAGAAATATAAGGGGTTATGGGGGAAGGCTGTTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

166

Amino Acids

19.19

Weight (kDa)

6.5

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	4 - 145	1.8e-08	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	6 - 143	4.9e-09	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26980 FvH4_6g32452 FvH4_6g32461 FvH4_6g32741
prunus_persica	Prupe.3G054600_v2.0.a1 Prupe.3G054700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395301
rosa_laevigata	RLG00000020089 RLG00000020183
rosa_multiflora	Rmu_sc0001483.1_g000030 Rmu_sc0002727.1_g000001 Rmu_sc0005789.1_g000002 Rmu_sc0010454.1_g000003 Rmu_sc0010817.1_g000032 Rmu_sc0035624.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434870 Rroxscaffold_2G00100290 Rroxscaffold_2G00103790 Rroxscaffold_2G00104560
rosa_rugosa	Rorug03G0358200
rosa_samantha	Rh2AG420800 Rh2AG439900 Rh2AG449200 Rh2BG425500 Rh2BG430600 Rh2BG449900 Rh2BG461600 Rh2CG407800 Rh2CG426900 Rh2CG436100 Rh2DG440500 Rh2DG459800 Rh2DG470800 Rh4AG058300 Rh4BG057100 Rh4CG062900 Rh4DG053800 Rh6CG063800 Rh6CG064600 Rh6DG060900 Rh6DG061600
rosa_wichuraiana	Rw2G035990 Rw4G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	394
AccII	CGCG	1 cut(s)	268
AciI	CCGC	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	95
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	268
AflII	CTTAAG	1 cut(s)	142
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	6 cut(s)	174, 229, 314, 385, 407, 449
AluBI	AGCT	4 cut(s)	67, 141, 206, 247
AluI	AGCT	4 cut(s)	67, 141, 206, 247
Alw21I	GWGCWC	1 cut(s)	249
AlwNI	CAGNNNCTG	2 cut(s)	11, 214
AoxI	GGCC	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	160, 442
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	160, 442
BaeI	ACNNNNGTAYC	4 cut(s)	354, 354, 387, 387
BanI	GGYRCC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BccI	CCATC	1 cut(s)	28
BciVI	GTATCC	1 cut(s)	173
BfaI	CTAG	2 cut(s)	255, 499
BfrI	CTTAAG	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	173
Bme18I	GGWCC	2 cut(s)	160, 442
BmgT120I	GGNCC	2 cut(s)	160, 442
BmiI	GGNNCC	1 cut(s)	396
BmsI	GCATC	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	320
BsaAI	YACGTR	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMII	CTCAG	2 cut(s)	128, 221
BseNI	ACTGG	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	1 cut(s)	436
BshNI	GGYRCC	1 cut(s)	394
BsiHKAI	GWGCWC	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	249
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	1 cut(s)	436
BspCNI	CTCAG	2 cut(s)	129, 220
BspFNI	CGCG	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	394
BspTI	CTTAAG	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	293
BstAFI	CTTAAG	1 cut(s)	142
BstBAI	YACGTR	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	137, 207
BstEII	GGTNACC	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	268
BstNSI	RCATGY	2 cut(s)	304, 311
BstPI	GGTNACC	1 cut(s)	37
BstUI	CGCG	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	22, 289
CaiI	CAGNNNCTG	2 cut(s)	11, 214
Cfr13I	GGNCC	2 cut(s)	160, 442
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	2 cut(s)	301, 308
CviJI	RGCY	7 cut(s)	67, 141, 206, 235, 247, 436, 490
CviKI_1	RGCY	7 cut(s)	67, 141, 206, 235, 247, 436, 490
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	2 cut(s)	137, 207
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	160, 442
Eco53kI	GAGCTC	1 cut(s)	247
Eco91I	GGTNACC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	2 cut(s)	304, 311
FaiI	YATR	5 cut(s)	74, 302, 309, 470, 480
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	2 cut(s)	300, 307
FauI	CCCGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	255, 499
HaeIII	GGCC	1 cut(s)	436
Hin1II	CATG	2 cut(s)	304, 311
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	3 cut(s)	8, 211, 407
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	19, 91
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	5 cut(s)	255, 337, 385, 404, 422
Hpy8I	GTNNAC	2 cut(s)	19, 91
HpyAV	CCTTC	3 cut(s)	114, 391, 480
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	2 cut(s)	51, 166
HpyCH4V	TGCA	2 cut(s)	304, 462
HpyF3I	CTNAG	2 cut(s)	137, 207
HpySE526I	ACGT	2 cut(s)	51, 166
Hsp92II	CATG	2 cut(s)	304, 311
LmnI	GCTCC	2 cut(s)	244, 252
LpnPI	CCDG	4 cut(s)	10, 200, 203, 226
LweI	GCATC	1 cut(s)	248
MaeI	CTAG	2 cut(s)	255, 499
MaeII	ACGT	2 cut(s)	51, 166
MaeIII	GTNAC	2 cut(s)	37, 52
MboII	GAAGA	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	3 cut(s)	95, 169, 223
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	5 cut(s)	111, 274, 384, 385, 420
MseI	TTAA	2 cut(s)	62, 143
MspCI	CTTAAG	1 cut(s)	142
MvnI	CGCG	1 cut(s)	268
NlaIII	CATG	2 cut(s)	304, 311
NlaIV	GGNNCC	1 cut(s)	396
NmuCI	GTSAC	2 cut(s)	37, 52
NspI	RCATGY	2 cut(s)	304, 311
PciI	ACATGT	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	211, 407
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
Ppu21I	YACGTR	1 cut(s)	52
PscI	ACATGT	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	249
PspEI	GGTNACC	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	2 cut(s)	160, 442
PstNI	CAGNNNCTG	2 cut(s)	11, 214
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	62, 143
Sau96I	GGNCC	2 cut(s)	160, 442
SchI	GAGTC	1 cut(s)	2
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	9 cut(s)	54, 69, 143, 169, 208, 249, 376, 383, 447
SfaNI	GCATC	1 cut(s)	248
SinI	GGWCC	2 cut(s)	160, 442
SmlI	CTYRAG	2 cut(s)	142, 335
SmoI	CTYRAG	2 cut(s)	142, 335
Sse9I	AATT	3 cut(s)	95, 169, 223
SsiI	CCGC	1 cut(s)	268
SspI	AATATT	1 cut(s)	47
SspMI	CTAG	2 cut(s)	255, 499
SstI	GAGCTC	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	2 cut(s)	54, 169
TasI	AATT	3 cut(s)	95, 169, 223
TfiI	GAWTC	2 cut(s)	211, 407
Tru1I	TTAA	2 cut(s)	62, 143
Tru9I	TTAA	2 cut(s)	62, 143
TscAI	CASTG	2 cut(s)	29, 296
TseFI	GTSAC	2 cut(s)	37, 52
Tsp45I	GTSAC	2 cut(s)	37, 52
TspDTI	ATGAA	1 cut(s)	44
TspRI	CASTG	2 cut(s)	29, 296
Vha464I	CTTAAG	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	160, 442
XapI	RAATTY	1 cut(s)	95
XbaI	TCTAGA	1 cut(s)	254
XceI	RCATGY	2 cut(s)	304, 311
XspI	CTAG	2 cut(s)	255, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.