Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002272

Physical Location & Seq

Genomic Coordinates Forward (+)

55446793 .. 55447476

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG407800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAGCTCGTTTTGTTGCCTAAAGGAACTAGAATTGACTTTTGTCGATTTGAATGGGCTAATCATCGGGGACCTCCTTTCCAGATGCCCTTCGCTTGAGAAGTTGAAACTCAACGACTGTGAACAGGTAGACTATCTTGAACTGGTTGATTTTCCCAAACCAAAGAAGCTTTGTCTCTATCGAGTTGAATCTAAAGCTTTCAAGTACAAGATTGAAGCAGCCATTCTTCAAGCTCTTAGTTATTCTGACATAGAAAATCCATTGGACCTTGAAGCAGTCTGTTGCAGTAATTTAGAGAACTTGAAACTATACACCTACATCGTTACTAACCAAAATATCAACGAATTCATTCGTAAATTTCCATGTCTTGCGAAGTTGGTCTTAGAGGCCGAGTGGCTTAAATCAGCAGATGATGAGATCAAAATTTCGAGCAATCAACTGAAATCATTAACACTAAACGGAGAAACCGACAACAAGAACATCAACATTGATGCCCCAAACCTTGTTTCTTACCATCATGAGGCTGACGAAATTCCGCCCTCGTTTTCATTCAATTATGTGAAGCTAGAAACACATAATCACGTTTTCTATAATGTTCCCAATGTTCACACTAAATGGTTTCTTAGATTGCGAGAATATCTTGCGAAGTTCAAACCTGCAAGGCTGCAACAGCATCGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

227

Amino Acids

26.35

Weight (kDa)

5.9

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26980 FvH4_6g32452 FvH4_6g32461 FvH4_6g32741
prunus_persica	Prupe.3G054600_v2.0.a1 Prupe.3G054700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395301
rosa_laevigata	RLG00000020089 RLG00000020183
rosa_multiflora	Rmu_sc0001483.1_g000030 Rmu_sc0002727.1_g000001 Rmu_sc0005789.1_g000002 Rmu_sc0010454.1_g000003 Rmu_sc0010817.1_g000032 Rmu_sc0035624.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434870 Rroxscaffold_2G00100290 Rroxscaffold_2G00103790 Rroxscaffold_2G00104560
rosa_rugosa	Rorug03G0358200
rosa_samantha	Rh2AG420800 Rh2AG439900 Rh2AG449200 Rh2BG425500 Rh2BG430600 Rh2BG449900 Rh2BG461600 Rh2CG407800 Rh2CG426900 Rh2CG436100 Rh2DG440500 Rh2DG459800 Rh2DG470800 Rh4AG058300 Rh4BG057100 Rh4CG062900 Rh4DG053800 Rh6CG063800 Rh6CG064600 Rh6DG060900 Rh6DG061600
rosa_wichuraiana	Rw2G035990 Rw4G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	664
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	1 cut(s)	536
AcsI	RAATTY	4 cut(s)	344, 356, 423, 531
AfaI	GTAC	2 cut(s)	206, 679
AfiI	CCNNNNNNNGG	1 cut(s)	520
AjuI	GAANNNNNNNTTGG	2 cut(s)	490, 522
AluBI	AGCT	5 cut(s)	6, 169, 197, 233, 565
AluI	AGCT	5 cut(s)	6, 169, 197, 233, 565
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	387
ApeKI	GCWGC	2 cut(s)	218, 664
ApoI	RAATTY	4 cut(s)	344, 356, 423, 531
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	70, 265
AvaII	GGWCC	2 cut(s)	70, 265
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	230, 651
BccI	CCATC	1 cut(s)	522
BcgI	CGANNNNNNTGC	1 cut(s)	656
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	2 cut(s)	29, 566
BfuAI	ACCTGC	1 cut(s)	664
BisI	GCNGC	2 cut(s)	219, 665
BlsI	GCNGC	2 cut(s)	220, 666
Bme18I	GGWCC	2 cut(s)	70, 265
BmgT120I	GGNCC	2 cut(s)	70, 265
BmiI	GGNNCC	1 cut(s)	71
BmsI	GCATC	2 cut(s)	74, 481
BoxI	GACNNNNGTC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse1I	ACTGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseNI	ACTGG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	230, 651
BshFI	GGCC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	417
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	71
BspMI	ACCTGC	1 cut(s)	664
BsrI	ACTGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	417
Bst4CI	ACNGT	1 cut(s)	119
BstDEI	CTNAG	3 cut(s)	236, 382, 623
BstKTI	GATC	1 cut(s)	420
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	417
BstMWI	GCNNNNNNNGC	1 cut(s)	670
BstPAI	GACNNNNGTC	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	230, 651
BsuRI	GGCC	1 cut(s)	389
BveI	ACCTGC	1 cut(s)	664
CciI	TCATGA	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	70, 265
Csp6I	GTAC	2 cut(s)	205, 678
CviAII	CATG	2 cut(s)	363, 518
CviQI	GTAC	2 cut(s)	205, 678
DdeI	CTNAG	3 cut(s)	236, 382, 623
DpnI	GATC	1 cut(s)	419
DpnII	GATC	1 cut(s)	417
EciI	GGCGGA	1 cut(s)	525
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	70, 265
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRI	GAATTC	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	366, 521
FaiI	YATR	7 cut(s)	251, 310, 364, 519, 558, 576, 591
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	362, 517
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	219, 665
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	219, 665
FspBI	CTAG	2 cut(s)	29, 566
GluI	GCNGC	2 cut(s)	219, 665
HaeIII	GGCC	1 cut(s)	389
Hin1II	CATG	2 cut(s)	366, 521
HindIII	AAGCTT	2 cut(s)	167, 195
HinfI	GANTC	1 cut(s)	188
Hpy166II	GTNNAC	3 cut(s)	122, 130, 607
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	3 cut(s)	81, 137, 518
Hpy8I	GTNNAC	3 cut(s)	122, 130, 607
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	3 cut(s)	285, 659, 667
HpyF10VI	GCNNNNNNNGC	1 cut(s)	670
HpyF3I	CTNAG	3 cut(s)	236, 382, 623
HpySE526I	ACGT	1 cut(s)	582
Hsp92II	CATG	2 cut(s)	366, 521
Kzo9I	GATC	1 cut(s)	417
LpnPI	CCDG	4 cut(s)	94, 110, 128, 669
Lsp1109I	GCAGC	2 cut(s)	230, 651
LweI	GCATC	2 cut(s)	74, 481
MaeI	CTAG	2 cut(s)	29, 566
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	1 cut(s)	419
MboI	GATC	1 cut(s)	417
MboII	GAAGA	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	7 cut(s)	32, 289, 344, 356, 423, 531, 553
MnlI	CCTC	4 cut(s)	83, 379, 514, 550
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	3 cut(s)	399, 449, 682
MwoI	GCNNNNNNNGC	1 cut(s)	670
NdeII	GATC	1 cut(s)	417
NlaIII	CATG	2 cut(s)	366, 521
NlaIV	GGNNCC	1 cut(s)	71
NmeAIII	GCCGAG	1 cut(s)	415
PagI	TCATGA	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	220, 666
PpuMI	RGGWCCY	1 cut(s)	70
PshAI	GACNNNNGTC	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	2 cut(s)	70, 265
PspPPI	RGGWCCY	1 cut(s)	70
RsaI	GTAC	2 cut(s)	206, 679
RsaNI	GTAC	2 cut(s)	205, 678
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	399, 449, 682
SatI	GCNGC	2 cut(s)	219, 665
Sau3AI	GATC	1 cut(s)	417
Sau96I	GGNCC	2 cut(s)	70, 265
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	74, 481
SinI	GGWCC	2 cut(s)	70, 265
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	7 cut(s)	32, 289, 344, 356, 423, 531, 553
SsiI	CCGC	1 cut(s)	536
SspMI	CTAG	2 cut(s)	29, 566
SstI	GAGCTC	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	3 cut(s)	45, 181, 428
TasI	AATT	7 cut(s)	32, 289, 344, 356, 423, 531, 553
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	3 cut(s)	399, 449, 682
Tru9I	TTAA	3 cut(s)	399, 449, 682
TseI	GCWGC	2 cut(s)	218, 664
TspDTI	ATGAA	2 cut(s)	337, 537
TspGWI	ACGGA	1 cut(s)	474
VpaK11BI	GGWCC	2 cut(s)	70, 265
XapI	RAATTY	4 cut(s)	344, 356, 423, 531
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	2 cut(s)	29, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.