Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002272

Physical Location & Seq

Genomic Coordinates Reverse (-)

63967394 .. 63969346

Gene Structure 1953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG440500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGAGCAGATTCTCTTTCGCTACTTGCCGGCATCTGATTCAATCCGCATGAGCTTTGCATCGAGGACATGGCAGAGACTATGGAAATCACTACCTGTCTCTGATGATTTTGATTTTGATGTGAGACGAGATGGCCGGCTGGACGAGTCAATGGAGGAGATTGTAACTTCCGTCGACGAATCCTTGAGAATACTCCATGAACATGAAGTTCGAAAACATATCATTCCTTCTTTTAGTTTGAGAGGGAGATTTAGCGATGAGATTCAAACTTCTCATGTAGACCGTTGGATGAAGCTGGTCACCAAACATTATGTCAAAAGGCTTGTTTTCTACAACTATGGAATACGATGGTACAAGTTTCCTTCTGCTGCTTTTGATGTTGGGTCGTTAGTTGCATTGAGTTTATATAAGTGCGTTTTGAAGAGAGATTCGATTCAAAGAAAAATGAGCTCCTTTTGTTGCCTAAAGGAACTGGAATTGACTTTTGTCGATTTGAATGGGCTAATCATCGGGGACCTCCTTTCCAGATGCCCTTCGCTTGAGAAGTTGAAACTCAACGACTGTGAAGGGGTAAACTATCTTGAGCTTGTTGATTTTCCCAAACTAAAGAAGTTTTGTCTCTATCGAGTTAAATCTAAAGCTTTCAAGTACAAGATTGAAGCAGCCAGTCTTCAAGCTCTTAGTTATTCTGACACAGAAAATCCATTGGACCTTGAAGCAGTCTGTTGCAGTAATTTAGAGAAGTTGAAACTACACACCTACATCGTTACTAACCAAAATATCAACGAATTCATTCGTAAATTTCCATGTCTTGCGAAGTTGGTCTTGGAGGCCGAGTGGCTAAAATCAGCAGATGATGAGATCAAAATTTCGAGCAATCAACTGAAATCATTTACACTAAACGGAGAGACCGACAACAAGAACATCAACATTGATGCCCCAAACCTTGTTTCTTACCATCATGAGGCTGACCAAATTCCGCCCTCGTTTTCATACAATTCATTGAAGCTAGAAACACATAATCACGTTTTCTATAATGTTTCCAGTGTTCACACTAAATGGTTTCTTAGATTGCGAGAATATCTTGCGAAGTTCAAACCTGCAACAGCATCGTACTTAAGATTGTACTCTCCTCGCAAAGCGATCAATATTTCTTTTAGAAAATTACAGCAAGAAAAAATTCCTCCTGTGCCGAAAATCACAAAATTGGTTCTAAACACTAGCTCATCATATTCATTAGATTATACAGCTCTTATTGATGGCCTACTTTGGAGTTGTCATCCGACCACGATATGGGTTCCGCGGCAGGACACTGAGGATAACAGCAATTTTATAAAGGTATTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

449

Amino Acids

52.29

Weight (kDa)

8.79

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	80 - 229	2.9e-11	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	93 - 213	1.2e-13	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26980 FvH4_6g32452 FvH4_6g32461 FvH4_6g32741
prunus_persica	Prupe.3G054600_v2.0.a1 Prupe.3G054700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395301
rosa_laevigata	RLG00000020089 RLG00000020183
rosa_multiflora	Rmu_sc0001483.1_g000030 Rmu_sc0002727.1_g000001 Rmu_sc0005789.1_g000002 Rmu_sc0010454.1_g000003 Rmu_sc0010817.1_g000032 Rmu_sc0035624.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434870 Rroxscaffold_2G00100290 Rroxscaffold_2G00103790 Rroxscaffold_2G00104560
rosa_rugosa	Rorug03G0358200
rosa_samantha	Rh2AG420800 Rh2AG439900 Rh2AG449200 Rh2BG425500 Rh2BG430600 Rh2BG449900 Rh2BG461600 Rh2CG407800 Rh2CG426900 Rh2CG436100 Rh2DG440500 Rh2DG459800 Rh2DG470800 Rh4AG058300 Rh4BG057100 Rh4CG062900 Rh4DG053800 Rh6CG063800 Rh6CG064600 Rh6DG060900 Rh6DG061600
rosa_wichuraiana	Rw2G035990 Rw4G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1334
Acc36I	ACCTGC	1 cut(s)	1108
AccB7I	CCANNNNNTGG	1 cut(s)	1293
AccI	GTMKAC	2 cut(s)	174, 279
AccII	CGCG	1 cut(s)	1303
AciI	CCGC	4 cut(s)	46, 980, 1301, 1303
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	5 cut(s)	788, 800, 867, 975, 1179
AfaI	GTAC	4 cut(s)	353, 650, 1115, 1127
AfiI	CCNNNNNNNGG	2 cut(s)	964, 1293
AflII	CTTAAG	1 cut(s)	1117
AjuI	GAANNNNNNNTTGG	4 cut(s)	809, 841, 934, 966
AluBI	AGCT	9 cut(s)	54, 295, 450, 586, 641, 677, 1009, 1224, 1250
AluI	AGCT	9 cut(s)	54, 295, 450, 586, 641, 677, 1009, 1224, 1250
Alw21I	GWGCWC	1 cut(s)	452
Alw26I	GTCTC	5 cut(s)	70, 103, 118, 623, 902
AoxI	GGCC	3 cut(s)	133, 831, 1261
ApeKI	GCWGC	2 cut(s)	368, 662
ApoI	RAATTY	5 cut(s)	788, 800, 867, 975, 1179
ArsI	GACNNNNNNTTYG	2 cut(s)	297, 329
Asp700I	GAANNNNTTC	2 cut(s)	792, 1179
AspS9I	GGNCC	2 cut(s)	514, 709
AsuHPI	GGTGA	1 cut(s)	292
AsuII	TTCGAA	1 cut(s)	211
AvaII	GGWCC	2 cut(s)	514, 709
BanII	GRGCYC	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	662
Bbv12I	GWGCWC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	355, 674
BccI	CCATC	4 cut(s)	125, 342, 966, 1253
BcgI	CGANNNNNNTGC	2 cut(s)	1092, 1126
BcoDI	GTCTC	5 cut(s)	70, 103, 118, 623, 902
BfaI	CTAG	2 cut(s)	1010, 1221
BfrI	CTTAAG	1 cut(s)	1117
BfuAI	ACCTGC	1 cut(s)	1108
BisI	GCNGC	3 cut(s)	369, 663, 1304
BlsI	GCNGC	3 cut(s)	370, 664, 1305
Bme18I	GGWCC	2 cut(s)	514, 709
BmgT120I	GGNCC	2 cut(s)	514, 709
BmiI	GGNNCC	2 cut(s)	515, 1299
BmsI	GCATC	5 cut(s)	41, 68, 518, 925, 1118
BoxI	GACNNNNGTC	1 cut(s)	485
BpiI	GAAGAC	1 cut(s)	662
Bpu14I	TTCGAA	1 cut(s)	211
BpuEI	CTTGAG	3 cut(s)	205, 560, 602
BsaI	GGTCTC	1 cut(s)	902
BsaJI	CCNNGG	1 cut(s)	1301
BsaXI	ACNNNNNCTCC	2 cut(s)	821, 851
Bsc4I	CCNNNNNNNGG	2 cut(s)	964, 1293
Bse118I	RCCGGY	2 cut(s)	28, 135
Bse1I	ACTGG	3 cut(s)	477, 666, 1044
BseDI	CCNNGG	1 cut(s)	1301
BseGI	GGATG	2 cut(s)	294, 1279
BseLI	CCNNNNNNNGG	2 cut(s)	964, 1293
BseMII	CTCAG	1 cut(s)	1305
BseNI	ACTGG	3 cut(s)	477, 666, 1044
BseRI	GAGGAG	2 cut(s)	170, 1122
BseXI	GCAGC	2 cut(s)	355, 674
Bsh1236I	CGCG	1 cut(s)	1303
BshFI	GGCC	3 cut(s)	135, 833, 1263
BsiHKAI	GWGCWC	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	29, 136
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	2 cut(s)	964, 1293
BsmAI	GTCTC	5 cut(s)	70, 103, 118, 623, 902
BsmBI	CGTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	527
BsnI	GGCC	3 cut(s)	135, 833, 1263
Bso31I	GGTCTC	1 cut(s)	902
Bsp119I	TTCGAA	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp143I	GATC	2 cut(s)	861, 1143
BspACI	CCGC	4 cut(s)	46, 980, 1301, 1303
BspANI	GGCC	3 cut(s)	135, 833, 1263
BspCNI	CTCAG	1 cut(s)	1306
BspFNI	CGCG	1 cut(s)	1303
BspHI	TCATGA	1 cut(s)	961
BspLI	GGNNCC	2 cut(s)	515, 1299
BspMI	ACCTGC	1 cut(s)	1108
BspT104I	TTCGAA	1 cut(s)	211
BspTI	CTTAAG	1 cut(s)	1117
BspTNI	GGTCTC	1 cut(s)	902
BsrFI	RCCGGY	2 cut(s)	28, 135
BsrI	ACTGG	3 cut(s)	477, 666, 1044
BssAI	RCCGGY	2 cut(s)	28, 135
BssECI	CCNNGG	1 cut(s)	1301
BssMI	GATC	2 cut(s)	861, 1143
Bst4CI	ACNGT	2 cut(s)	284, 563
Bst6I	CTCTTC	1 cut(s)	416
BstAFI	CTTAAG	1 cut(s)	1117
BstBI	TTCGAA	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	30, 137
BstDEI	CTNAG	3 cut(s)	680, 1067, 1314
BstDSI	CCRYGG	1 cut(s)	1301
BstEII	GGTNACC	1 cut(s)	298
BstF5I	GGATG	2 cut(s)	294, 1279
BstFNI	CGCG	1 cut(s)	1303
BstKTI	GATC	2 cut(s)	864, 1146
BstMAI	GTCTC	5 cut(s)	70, 103, 118, 623, 902
BstMBI	GATC	2 cut(s)	861, 1143
BstPAI	GACNNNNGTC	1 cut(s)	485
BstPI	GGTNACC	1 cut(s)	298
BstUI	CGCG	1 cut(s)	1303
BstV1I	GCAGC	2 cut(s)	355, 674
BstV2I	GAAGAC	1 cut(s)	662
BsuRI	GGCC	3 cut(s)	135, 833, 1263
BtgI	CCRYGG	1 cut(s)	1301
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	294, 1279
BtsIMutI	CAGTG	2 cut(s)	1051, 1311
BveI	ACCTGC	1 cut(s)	1108
Cac8I	GCNNGC	2 cut(s)	30, 137
CciI	TCATGA	1 cut(s)	961
Cfr10I	RCCGGY	2 cut(s)	28, 135
Cfr13I	GGNCC	2 cut(s)	514, 709
Cfr42I	CCGCGG	1 cut(s)	1304
Csp6I	GTAC	4 cut(s)	352, 649, 1114, 1126
CviAII	CATG	7 cut(s)	49, 69, 197, 203, 275, 807, 962
CviQI	GTAC	4 cut(s)	352, 649, 1114, 1126
DdeI	CTNAG	3 cut(s)	680, 1067, 1314
DpnI	GATC	2 cut(s)	863, 1145
DpnII	GATC	2 cut(s)	861, 1143
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
EciI	GGCGGA	1 cut(s)	969
Ecl136II	GAGCTC	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	902
Eco47I	GGWCC	2 cut(s)	514, 709
Eco53kI	GAGCTC	1 cut(s)	450
Eco91I	GGTNACC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	450
EcoO109I	RGGNCCY	1 cut(s)	514
EcoO65I	GGTNACC	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	788
EcoT38I	GRGCYC	1 cut(s)	452
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	7 cut(s)	52, 72, 200, 206, 278, 810, 965
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	7 cut(s)	48, 68, 196, 202, 274, 806, 961
FblI	GTMKAC	2 cut(s)	174, 279
Fnu4HI	GCNGC	3 cut(s)	369, 663, 1304
FokI	GGATG	2 cut(s)	301, 1266
FriOI	GRGCYC	1 cut(s)	452
Fsp4HI	GCNGC	3 cut(s)	369, 663, 1304
FspBI	CTAG	2 cut(s)	1010, 1221
GluI	GCNGC	3 cut(s)	369, 663, 1304
HaeIII	GGCC	3 cut(s)	135, 833, 1263
HapII	CCGG	2 cut(s)	29, 136
Hin1II	CATG	7 cut(s)	52, 72, 200, 206, 278, 810, 965
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	7 cut(s)	10, 38, 146, 179, 262, 428, 433
HpaII	CCGG	2 cut(s)	29, 136
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	4 cut(s)	175, 280, 574, 1051
Hpy188I	TCNGA	4 cut(s)	37, 103, 691, 1284
Hpy188III	TCNNGA	3 cut(s)	525, 581, 962
Hpy8I	GTNNAC	4 cut(s)	175, 280, 574, 1051
Hpy99I	CGWCG	2 cut(s)	176, 179
HpyAV	CCTTC	4 cut(s)	237, 372, 543, 560
HpyCH4III	ACNGT	2 cut(s)	284, 563
HpyCH4IV	ACGT	1 cut(s)	1026
HpyCH4V	TGCA	4 cut(s)	59, 395, 729, 1103
HpyF3I	CTNAG	3 cut(s)	680, 1067, 1314
HpySE526I	ACGT	1 cut(s)	1026
Hsp92II	CATG	7 cut(s)	52, 72, 200, 206, 278, 810, 965
KroI	GCCGGC	2 cut(s)	28, 135
KroNI	GCCGGC	2 cut(s)	30, 137
KspI	CCGCGG	1 cut(s)	1304
Kzo9I	GATC	2 cut(s)	861, 1143
LmnI	GCTCC	2 cut(s)	4, 455
Lsp1109I	GCAGC	2 cut(s)	355, 674
LweI	GCATC	5 cut(s)	41, 68, 518, 925, 1118
MaeI	CTAG	2 cut(s)	1010, 1221
MaeII	ACGT	1 cut(s)	1026
MaeIII	GTNAC	3 cut(s)	163, 298, 766
MalI	GATC	2 cut(s)	863, 1145
MboI	GATC	2 cut(s)	861, 1143
MboII	GAAGA	2 cut(s)	433, 662
MhlI	GDGCHC	1 cut(s)	452
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	2 cut(s)	266, 1307
MroNI	GCCGGC	2 cut(s)	28, 135
MroXI	GAANNNNTTC	2 cut(s)	792, 1179
MseI	TTAA	2 cut(s)	630, 1118
MslI	CAYNNNNRTG	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	1303
MspCI	CTTAAG	1 cut(s)	1117
MspI	CCGG	2 cut(s)	29, 136
MvnI	CGCG	1 cut(s)	1303
NaeI	GCCGGC	2 cut(s)	30, 137
NdeII	GATC	2 cut(s)	861, 1143
NgoMIV	GCCGGC	2 cut(s)	28, 135
NlaIII	CATG	7 cut(s)	52, 72, 200, 206, 278, 810, 965
NlaIV	GGNNCC	2 cut(s)	515, 1299
NmeAIII	GCCGAG	1 cut(s)	859
NmuCI	GTSAC	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	211
PagI	TCATGA	1 cut(s)	961
PcsI	WCGNNNNNNNCGW	1 cut(s)	909
PdiI	GCCGGC	2 cut(s)	30, 137
PdmI	GAANNNNTTC	2 cut(s)	792, 1179
PfeI	GAWTC	6 cut(s)	10, 38, 179, 262, 428, 433
PflMI	CCANNNNNTGG	1 cut(s)	1293
PkrI	GCNGC	3 cut(s)	370, 664, 1305
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	514
PshAI	GACNNNNGTC	1 cut(s)	485
PsiI	TTATAA	1 cut(s)	1334
Psp124BI	GAGCTC	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	514
PspEI	GGTNACC	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	515, 1299
PspPI	GGNCC	2 cut(s)	514, 709
PspPPI	RGGWCCY	1 cut(s)	514
RsaI	GTAC	4 cut(s)	353, 650, 1115, 1127
RsaNI	GTAC	4 cut(s)	352, 649, 1114, 1126
RseI	CAYNNNNRTG	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	452
SacII	CCGCGG	1 cut(s)	1304
SalI	GTCGAC	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	630, 1118
SatI	GCNGC	3 cut(s)	369, 663, 1304
Sau3AI	GATC	2 cut(s)	861, 1143
Sau96I	GGNCC	2 cut(s)	514, 709
SchI	GAGTC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	452
SfaNI	GCATC	5 cut(s)	41, 68, 518, 925, 1118
Sfr303I	CCGCGG	1 cut(s)	1304
SfuI	TTCGAA	1 cut(s)	211
SgrBI	CCGCGG	1 cut(s)	1304
SgrDI	CGTCGACG	1 cut(s)	173
SinI	GGWCC	2 cut(s)	514, 709
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	4 cut(s)	184, 539, 581, 1117
SmoI	CTYRAG	4 cut(s)	184, 539, 581, 1117
SsiI	CCGC	4 cut(s)	46, 980, 1301, 1303
SspI	AATATT	1 cut(s)	1150
SspMI	CTAG	2 cut(s)	1010, 1221
SstI	GAGCTC	1 cut(s)	452
TaaI	ACNGT	2 cut(s)	284, 563
TaiI	ACGT	1 cut(s)	1029
TaqI	TCGA	7 cut(s)	62, 174, 211, 431, 489, 625, 872
TaqII	GACCGA	1 cut(s)	926
TatI	WGTACW	2 cut(s)	648, 1125
TauI	GCSGC	1 cut(s)	1306
TfiI	GAWTC	6 cut(s)	10, 38, 179, 262, 428, 433
Tru1I	TTAA	2 cut(s)	630, 1118
Tru9I	TTAA	2 cut(s)	630, 1118
TscAI	CASTG	2 cut(s)	1051, 1318
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	2 cut(s)	368, 662
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	7 cut(s)	213, 219, 305, 781, 981, 990, 1224
TspGWI	ACGGA	2 cut(s)	160, 918
TspRI	CASTG	2 cut(s)	1051, 1318
Van91I	CCANNNNNTGG	1 cut(s)	1293
Vha464I	CTTAAG	1 cut(s)	1117
VpaK11BI	GGWCC	2 cut(s)	514, 709
XapI	RAATTY	5 cut(s)	788, 800, 867, 975, 1179
XmiI	GTMKAC	2 cut(s)	174, 279
XmnI	GAANNNNTTC	2 cut(s)	792, 1179
XspI	CTAG	2 cut(s)	1010, 1221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.