Rroxscaffold_2G00100290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002272
Physical Location & Seq
Forward (+)
22157858 .. 22161370
3513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100290.1

Sequence Viewer

Length: 1038 bp
ATGGATCGGATATCGCAGTTGCCGGAAGCCCTTATGCTGGAAATCCTCCTCCGGTTGCCTCCGATAGATTCAGTACGTCTGAAAATCACGTCGAGGACATGGAACTCACTCCTGGTTTCTTATTTTTGTCCTCCTATATTAAGTAGTTGGGATGAACATTCTGTCTCTAGTATTGATCAATCCTTGAGAAAACTCCATGAACTGCATCCGAAAAACATATTTCACTGCTTTACCGTGCGTGAATACCTTTCGGACGAAAGTAATGATCCCCATGTCTACAGATGGATAAAGTTGGCCACCAAACACTGTCTGAATCAGCTAAATCTCCACATCTATGGTCAGCAACCAGTGGACCTTGAAGTAGTCAGGTGCAGTAATCTAAAGGAGTTGATCGTTATGACTCCCGGTAGTACCATAACCCACCAATATGTTGAAAAACTTACTCGTAAGTTTCCCCATCTTGAGGTGCTTAGAAGCCTCTTTCGGATCACCCAAGCTGTTGATATCAAGTCATCAGCTCAAGAAATTGACATTACCTTTAGGAAAGGAGGTGAATCTACATACGTCAAATCTTGCTTTTTGCACTTACGTACAGCAACAAAAAAATCCACCTCCGGCGGTTTTTTGTTGGATTCTACCAAGCTTGAAGAACTGAATGTTCGCCTAGATAAGAGCGATATTCCTAAAGGTCTTGACTTCTTTTTTACTTTGCAAAAGAGATTTCGAGAATTCGCTGCACAAGAACGCTCGACTGTTTTTATAAACGGTTCAGAAGTCAAATTTTGTCTGAAACTATTAGAAGAAGAACCATCAGTACCAGAAATTATGCAGTTACAGTTGAAACCTAGAGATGATTTTACACGGGAAGACCTCGGCTATTGCTTTTCAACTTTACTTGATAACTTGCTGTGGAGTTGTCATCCAGTGGCCTTATCCATCACAGAAAATGGATGGATTTTAAAGTTTGTACCTATAAGTCTTTTTCAAAGAAACAATAATGCAAGATGTTGCTTCAATGCTTTAGCTAGCCTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

345

Amino Acids

39.91

Weight (kDa)

7.59

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 38 8.8e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 761
AccI GTMKAC 1 cut(s) 276
AciI CCGC 1 cut(s) 618
AclWI GGATC 3 cut(s) 12, 260, 494
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 2 cut(s) 728, 779
AfaI GTAC 5 cut(s) 75, 412, 592, 816, 969
AfiI CCNNNNNNNGG 2 cut(s) 37, 463
AgsI TTSAA 7 cut(s) 359, 434, 647, 841, 888, 986, 1015
AjiI CACGTC 1 cut(s) 90
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 5 cut(s) 319, 497, 518, 643, 1025
AluI AGCT 5 cut(s) 319, 497, 518, 643, 1025
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 3 cut(s) 12, 260, 494
AoxI GGCC 2 cut(s) 294, 927
ApeKI GCWGC 1 cut(s) 734
ApoI RAATTY 2 cut(s) 728, 779
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 405
AsuHPI GGTGA 2 cut(s) 481, 563
AsuNHI GCTAGC 1 cut(s) 1025
AvaII GGWCC 1 cut(s) 352
BalI TGGCCA 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 873
BbvI GCAGC 1 cut(s) 721
BccI CCATC 5 cut(s) 276, 465, 817, 944, 945
BciT130I CCWGG 1 cut(s) 113
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 4 cut(s) 168, 665, 846, 1026
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 1 cut(s) 735
BlsI GCNGC 1 cut(s) 736
Bme1390I CCNGG 2 cut(s) 113, 405
Bme18I GGWCC 1 cut(s) 352
BmgBI CACGTC 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 352
BmrFI CCNGG 2 cut(s) 113, 405
BmsI GCATC 1 cut(s) 214
BmtI GCTAGC 1 cut(s) 1029
BpiI GAAGAC 1 cut(s) 873
BpuEI CTTGAG 3 cut(s) 205, 482, 504
BpuMI CCSGG 1 cut(s) 405
BsaAI YACGTR 1 cut(s) 590
BsaJI CCNNGG 1 cut(s) 871
BsaWI WCCGGW 1 cut(s) 51
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 463
Bse1I ACTGG 2 cut(s) 347, 923
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 871
BseGI GGATG 4 cut(s) 157, 205, 919, 956
BseLI CCNNNNNNNGG 2 cut(s) 37, 463
BseNI ACTGG 2 cut(s) 347, 923
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 721
BsgI GTGCAG 2 cut(s) 391, 720
BshFI GGCC 2 cut(s) 296, 929
BsiSI CCGG 4 cut(s) 23, 52, 405, 615
BslI CCNNNNNNNGG 2 cut(s) 37, 463
BsmAI GTCTC 1 cut(s) 169
BsnI GGCC 2 cut(s) 296, 929
Bsp143I GATC 5 cut(s) 4, 175, 265, 390, 486
BspACI CCGC 1 cut(s) 618
BspANI GGCC 2 cut(s) 296, 929
BspOI GCTAGC 1 cut(s) 1029
BspPI GGATC 3 cut(s) 12, 260, 494
BsrI ACTGG 2 cut(s) 347, 923
BssECI CCNNGG 1 cut(s) 871
BssMI GATC 5 cut(s) 4, 175, 265, 390, 486
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 5 cut(s) 235, 308, 754, 767, 837
BstBAI YACGTR 1 cut(s) 590
BstC8I GCNNGC 1 cut(s) 1027
BstDEI CTNAG 1 cut(s) 470
BstF5I GGATG 4 cut(s) 157, 205, 919, 956
BstKTI GATC 5 cut(s) 7, 178, 268, 393, 489
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 5 cut(s) 4, 175, 265, 390, 486
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 2 cut(s) 111, 403
BstSFI CTRYAG 1 cut(s) 277
BstSNI TACGTA 1 cut(s) 590
BstV1I GCAGC 1 cut(s) 721
BstV2I GAAGAC 1 cut(s) 873
BstXI CCANNNNNNTGG 1 cut(s) 335
BsuRI GGCC 2 cut(s) 296, 929
BtrI CACGTC 1 cut(s) 90
BtsCI GGATG 4 cut(s) 157, 205, 919, 956
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 4 cut(s) 223, 304, 354, 930
Cac8I GCNNGC 1 cut(s) 1027
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 5 cut(s) 74, 411, 591, 815, 968
CviAII CATG 3 cut(s) 99, 197, 272
CviQI GTAC 5 cut(s) 74, 411, 591, 815, 968
DdeI CTNAG 1 cut(s) 470
DpnI GATC 5 cut(s) 6, 177, 267, 392, 488
DpnII GATC 5 cut(s) 4, 175, 265, 390, 486
DraI TTTAAA 1 cut(s) 960
EaeI YGGCCR 1 cut(s) 294
Eco105I TACGTA 1 cut(s) 590
Eco32I GATATC 2 cut(s) 12, 505
Eco47I GGWCC 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 111
EcoRV GATATC 2 cut(s) 12, 505
FaeI CATG 3 cut(s) 102, 200, 275
FatI CATG 3 cut(s) 98, 196, 271
FbaI TGATCA 1 cut(s) 175
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 735
FokI GGATG 4 cut(s) 164, 192, 906, 963
Fsp4HI GCNGC 1 cut(s) 735
FspBI CTAG 4 cut(s) 168, 665, 846, 1026
GluI GCNGC 1 cut(s) 735
HaeIII GGCC 2 cut(s) 296, 929
HapII CCGG 4 cut(s) 23, 52, 405, 615
Hin1II CATG 3 cut(s) 102, 200, 275
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 5 cut(s) 68, 313, 400, 554, 632
HpaII CCGG 4 cut(s) 23, 52, 405, 615
HphI GGTGA 2 cut(s) 481, 563
Hpy166II GTNNAC 2 cut(s) 277, 352
Hpy188I TCNGA 9 cut(s) 9, 63, 81, 210, 253, 312, 486, 772, 789
Hpy188III TCNNGA 4 cut(s) 461, 521, 692, 725
Hpy8I GTNNAC 2 cut(s) 277, 352
Hpy99I CGWCG 1 cut(s) 94
HpyCH4III ACNGT 5 cut(s) 235, 308, 754, 767, 837
HpyCH4IV ACGT 4 cut(s) 76, 89, 564, 589
HpyCH4V TGCA 7 cut(s) 205, 372, 583, 712, 737, 829, 1001
HpyF3I CTNAG 1 cut(s) 470
HpySE526I ACGT 4 cut(s) 76, 89, 564, 589
Hsp92II CATG 3 cut(s) 102, 200, 275
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 5 cut(s) 4, 175, 265, 390, 486
Lsp1109I GCAGC 1 cut(s) 721
LweI GCATC 1 cut(s) 214
MaeI CTAG 4 cut(s) 168, 665, 846, 1026
MaeII ACGT 4 cut(s) 76, 89, 564, 589
MaeIII GTNAC 1 cut(s) 831
MalI GATC 5 cut(s) 6, 177, 267, 392, 488
MboI GATC 5 cut(s) 4, 175, 265, 390, 486
MboII GAAGA 4 cut(s) 659, 812, 815, 878
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 4 cut(s) 525, 728, 779, 822
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 394
MmeI TCCRAC 1 cut(s) 609
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 2 cut(s) 140, 959
MslI CAYNNNNRTG 2 cut(s) 333, 426
Msp20I TGGCCA 1 cut(s) 296
MspI CCGG 4 cut(s) 23, 52, 405, 615
MspR9I CCNGG 2 cut(s) 113, 405
MvaI CCWGG 1 cut(s) 113
NciI CCSGG 1 cut(s) 405
NdeII GATC 5 cut(s) 4, 175, 265, 390, 486
NheI GCTAGC 1 cut(s) 1025
NlaIII CATG 3 cut(s) 102, 200, 275
NmeAIII GCCGAG 1 cut(s) 852
PfeI GAWTC 4 cut(s) 68, 313, 554, 632
PkrI GCNGC 1 cut(s) 736
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Ppu21I YACGTR 1 cut(s) 590
PsiI TTATAA 1 cut(s) 761
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspPI GGNCC 1 cut(s) 352
PsrI GAACNNNNNNTAC 2 cut(s) 798, 830
RsaI GTAC 5 cut(s) 75, 412, 592, 816, 969
RsaNI GTAC 5 cut(s) 74, 411, 591, 815, 968
RseI CAYNNNNRTG 2 cut(s) 333, 426
SaqAI TTAA 2 cut(s) 140, 959
SatI GCNGC 1 cut(s) 735
Sau3AI GATC 5 cut(s) 4, 175, 265, 390, 486
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 2 cut(s) 113, 405
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 1 cut(s) 277
SinI GGWCC 1 cut(s) 352
SmiMI CAYNNNNRTG 2 cut(s) 333, 426
SmlI CTYRAG 4 cut(s) 184, 461, 519, 1031
SmoI CTYRAG 4 cut(s) 184, 461, 519, 1031
SnaBI TACGTA 1 cut(s) 590
Sse9I AATT 4 cut(s) 525, 728, 779, 822
SsiI CCGC 1 cut(s) 618
SspMI CTAG 4 cut(s) 168, 665, 846, 1026
StyD4I CCNGG 2 cut(s) 111, 403
TaaI ACNGT 5 cut(s) 235, 308, 754, 767, 837
TaiI ACGT 4 cut(s) 79, 92, 567, 592
TaqI TCGA 3 cut(s) 92, 724, 749
TasI AATT 4 cut(s) 525, 728, 779, 822
TfiI GAWTC 4 cut(s) 68, 313, 554, 632
Tru1I TTAA 2 cut(s) 140, 959
Tru9I TTAA 2 cut(s) 140, 959
TscAI CASTG 4 cut(s) 230, 311, 354, 930
TseI GCWGC 1 cut(s) 734
TspDTI ATGAA 2 cut(s) 168, 213
TspRI CASTG 4 cut(s) 230, 311, 354, 930
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 2 cut(s) 728, 779
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 4 cut(s) 168, 665, 846, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.