Rh2CG436100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
59257380 .. 59259531
2152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG436100.1

Sequence Viewer

Length: 1572 bp
ATGGATCGGATATCGCAGTTGCCGGAAGCCCTTATGCTGGAAATCCTCCTCCGGTTGCCTCCGATAGATTCAGTCCGTCTGAAAATCACGTCGAGGACATGGAACTCACTCCCGATCTCTTATTTTTGTCCTCCTATATTCAGTAGTTGGGATGAACATTCTGTCTCTAGTATTGATCAATCCTTGAGAAAACTCCATGAACTGCATCCGAAAAACATATTTCACTGCTTTACCCTGCATGAATACCTTTTCGACGAAAGTAATGATTCCCATGTCTACAGATGGATAAAGTTGGCCACCAAACACTGTCTGAATCAGCTAGATCTCCACATCTATGGTCAGCAAGTAGAGTACTACAGCTTTCCTATATTCGATTTTGATTTTGGTTCATTAATTGTGTTGAGGTTCCGTTGCATTCTGGTAAAACCATTCTTTCCAGGGGAGCGAAAGAGGTTTAACTGCCTAAAAGAGCTGCGTTTGCATGTTGATTTAACCAGATTATCAGTAGTGGATGTGCTTTCTATGTGTCCTTCCCTTGAGATCTTAGATCTCAGATACTGTTACAACATAAACTATCTTCAACTCTGTGACTTTCCTAAGCTAAAGCAGGTTTACCTTACACCAAGATACTATAGGGACATTTATAGTTACAAGATTGAAGCAGCCAATCTCGAAACTCTCCATCTTGAAACTTATCACTCAAATTGTCAATGTTACCCGACTTGTCAATGCTCCCAGCCAGTGGACCTTGAAGTAGTCAGGTGCAGTAATCTAAAGGAGTTGATCGTTATGACTCCCGGTAGTACCATAACCCACCAATATGTTGAAAAACTTACTCGTAAGTTTCCCCATCTTGAGGTGTTAAGCTTAGAAGCCTCTTTCGGATCACCCAAGCTGTTCATATCAAGTCATCAACTCAGGAAATTGACATTACATTTAGGAAGTAATCCTTTAGAGGAGGTGAATCTACATACTCCAAATCTTGCTTTTTGCACATACAGCAACAAAAAAATCCACCTCCGGCGGTTTTTGTTGGATTCTACCAAGCTTGAAGAACTGAATGTTCGCCTAGATAAAAGCGATTTTCCTAAAGGTCTTGACTTCTTTATTACTTTGCAAAAGAGATTTCGAGAATTCGCTGCACAAGAACGCTCGACTGTTTTTATAAACGGTTCAGAAATCAAACTTTGTCTGAAATTATTAAGAGAAGAACCATCAGTACCAGAAATTATGCAGTTACAGTTGAAACCTAGAGATGATTTTACACGGGAAGACCTCGGCTATTGCTTTTCAACTTTACTTGATAACTTGCTGCGGAGTTGTCATCCAATGGCCTTATCCATCACAGAAAATGGATGGATTTTAAAGGCCATCTGCAAGAAGTTCATGTCTTGGGAAGAGAATTCACCATGTTGTAGAGACAACAGCATCAAATGTTGGAGGCACTATTTAAAGTCTATTGAGATTCAAAGCATGAATGGTCGTGATGCAGATCTATCGATACAAGCAATACATATCCAAGGCGTTGATAGTATCAGTTTTGCGCTACGATGGTTAGTGCCAGACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

523

Amino Acids

61.38

Weight (kDa)

7.52

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 37 3.9e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 82 - 359 1.4e-09 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 93 - 296 5.6e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1166
Acc36I ACCTGC 1 cut(s) 598
AccB7I CCANNNNNTGG 1 cut(s) 742
AccI GTMKAC 1 cut(s) 276
AciI CCGC 2 cut(s) 1024, 1315
AclWI GGATC 2 cut(s) 12, 892
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 2 cut(s) 1133, 1402
AfaI GTAC 3 cut(s) 353, 805, 1221
AfiI CCNNNNNNNGG 3 cut(s) 37, 742, 856
AgsI TTSAA 9 cut(s) 581, 659, 689, 752, 827, 1052, 1246, 1293, 1469
AjiI CACGTC 1 cut(s) 90
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 7 cut(s) 319, 360, 472, 601, 867, 895, 1048
AluI AGCT 7 cut(s) 319, 360, 472, 601, 867, 895, 1048
Alw26I GTCTC 2 cut(s) 169, 1413
AlwI GGATC 2 cut(s) 12, 892
AlwNI CAGNNNCTG 1 cut(s) 558
AoxI GGCC 3 cut(s) 294, 1332, 1368
ApeKI GCWGC 4 cut(s) 472, 662, 1139, 1312
ApoI RAATTY 2 cut(s) 1133, 1402
AseI ATTAAT 1 cut(s) 392
AspLEI GCGC 1 cut(s) 1546
AspS9I GGNCC 1 cut(s) 745
AsuC2I CCSGG 1 cut(s) 798
AsuHPI GGTGA 3 cut(s) 879, 973, 1398
AvaII GGWCC 1 cut(s) 745
BalI TGGCCA 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 1278
BbvI GCAGC 4 cut(s) 459, 674, 1126, 1299
BccI CCATC 8 cut(s) 276, 690, 858, 1222, 1349, 1350, 1379, 1545
BcgI CGANNNNNNTGC 2 cut(s) 1479, 1513
BciT130I CCWGG 1 cut(s) 438
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 1 cut(s) 798
BcoDI GTCTC 2 cut(s) 169, 1413
BfaI CTAG 4 cut(s) 168, 320, 1070, 1251
BfmI CTRYAG 3 cut(s) 277, 355, 631
BfuAI ACCTGC 1 cut(s) 598
BglII AGATCT 4 cut(s) 322, 540, 547, 1492
BisI GCNGC 4 cut(s) 473, 663, 1140, 1313
BlsI GCNGC 4 cut(s) 474, 664, 1141, 1314
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 2 cut(s) 438, 798
Bme18I GGWCC 1 cut(s) 745
BmgBI CACGTC 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 745
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 2 cut(s) 438, 798
BmsI GCATC 3 cut(s) 214, 1437, 1477
BpiI GAAGAC 1 cut(s) 1278
Bpu10I CCTNAGC 1 cut(s) 597
BpuEI CTTGAG 3 cut(s) 205, 557, 875
BpuMI CCSGG 1 cut(s) 798
Bsa29I ATCGAT 1 cut(s) 1499
BsaBI GATNNNNATC 1 cut(s) 1491
BsaJI CCNNGG 3 cut(s) 437, 1276, 1519
BsaWI WCCGGW 1 cut(s) 51
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 742, 856
Bse1I ACTGG 1 cut(s) 740
Bse8I GATNNNNATC 1 cut(s) 1491
BseBI CCWGG 1 cut(s) 438
BseCI ATCGAT 1 cut(s) 1499
BseDI CCNNGG 3 cut(s) 437, 1276, 1519
BseGI GGATG 5 cut(s) 157, 205, 517, 1324, 1361
BseJI GATNNNNATC 1 cut(s) 1491
BseLI CCNNNNNNNGG 3 cut(s) 37, 742, 856
BseMII CTCAG 2 cut(s) 565, 931
BseNI ACTGG 1 cut(s) 740
BseRI GAGGAG 2 cut(s) 38, 971
BseXI GCAGC 4 cut(s) 459, 674, 1126, 1299
BseYI CCCAGC 1 cut(s) 735
BsgI GTGCAG 2 cut(s) 784, 1125
BshFI GGCC 3 cut(s) 296, 1334, 1370
BshVI ATCGAT 1 cut(s) 1499
BsiSI CCGG 4 cut(s) 23, 52, 798, 1021
BslFI GGGAC 1 cut(s) 650
BslI CCNNNNNNNGG 3 cut(s) 37, 742, 856
BsmAI GTCTC 2 cut(s) 169, 1413
BsmFI GGGAC 1 cut(s) 650
BsmI GAATGC 1 cut(s) 414
BsnI GGCC 3 cut(s) 296, 1334, 1370
Bsp143I GATC 9 cut(s) 4, 114, 175, 322, 540, 547, 783, 884, 1492
BspACI CCGC 2 cut(s) 1024, 1315
BspANI GGCC 3 cut(s) 296, 1334, 1370
BspCNI CTCAG 2 cut(s) 564, 930
BspDI ATCGAT 1 cut(s) 1499
BspLI GGNNCC 1 cut(s) 407
BspMI ACCTGC 1 cut(s) 598
BspPI GGATC 2 cut(s) 12, 892
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 3 cut(s) 437, 1276, 1519
BssMI GATC 9 cut(s) 4, 114, 175, 322, 540, 547, 783, 884, 1492
BssT1I CCWWGG 1 cut(s) 1519
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 5 cut(s) 308, 560, 1159, 1172, 1242
Bst6I CTCTTC 1 cut(s) 1392
BstDEI CTNAG 5 cut(s) 544, 551, 597, 868, 917
BstF5I GGATG 5 cut(s) 157, 205, 517, 1324, 1361
BstHHI GCGC 1 cut(s) 1546
BstKTI GATC 9 cut(s) 7, 117, 178, 325, 543, 550, 786, 887, 1495
BstMAI GTCTC 2 cut(s) 169, 1413
BstMBI GATC 9 cut(s) 4, 114, 175, 322, 540, 547, 783, 884, 1492
BstMWI GCNNNNNNNGC 2 cut(s) 478, 999
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 2 cut(s) 436, 796
BstSFI CTRYAG 3 cut(s) 277, 355, 631
BstV1I GCAGC 4 cut(s) 459, 674, 1126, 1299
BstV2I GAAGAC 1 cut(s) 1278
BstX2I RGATCY 4 cut(s) 322, 540, 547, 1492
BstXI CCANNNNNNTGG 1 cut(s) 335
BstYI RGATCY 4 cut(s) 322, 540, 547, 1492
Bsu15I ATCGAT 1 cut(s) 1499
BsuRI GGCC 3 cut(s) 296, 1334, 1370
BsuTUI ATCGAT 1 cut(s) 1499
BtrI CACGTC 1 cut(s) 90
BtsCI GGATG 5 cut(s) 157, 205, 517, 1324, 1361
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 3 cut(s) 223, 304, 747
BveI ACCTGC 1 cut(s) 598
CaiI CAGNNNCTG 1 cut(s) 558
CfoI GCGC 1 cut(s) 1546
Cfr13I GGNCC 1 cut(s) 745
ClaI ATCGAT 1 cut(s) 1499
Csp6I GTAC 3 cut(s) 352, 804, 1220
CviAII CATG 8 cut(s) 99, 197, 239, 272, 482, 1387, 1410, 1474
CviQI GTAC 3 cut(s) 352, 804, 1220
DdeI CTNAG 5 cut(s) 544, 551, 597, 868, 917
DpnI GATC 9 cut(s) 6, 116, 177, 324, 542, 549, 785, 886, 1494
DpnII GATC 9 cut(s) 4, 114, 175, 322, 540, 547, 783, 884, 1492
DraI TTTAAA 2 cut(s) 1365, 1452
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 1392
EarI CTCTTC 1 cut(s) 1392
Eco130I CCWWGG 1 cut(s) 1519
Eco32I GATATC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 745
EcoRI GAATTC 2 cut(s) 1133, 1402
EcoRII CCWGG 1 cut(s) 436
EcoRV GATATC 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 1519
ErhI CCWWGG 1 cut(s) 1519
FaeI CATG 8 cut(s) 102, 200, 242, 275, 485, 1390, 1413, 1477
FalI AAGNNNNNCTT 2 cut(s) 934, 966
FaqI GGGAC 1 cut(s) 650
FatI CATG 8 cut(s) 98, 196, 238, 271, 481, 1386, 1409, 1473
FbaI TGATCA 1 cut(s) 175
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 4 cut(s) 473, 663, 1140, 1313
FokI GGATG 5 cut(s) 164, 192, 524, 1311, 1368
Fsp4HI GCNGC 4 cut(s) 473, 663, 1140, 1313
FspBI CTAG 4 cut(s) 168, 320, 1070, 1251
GlaI GCGC 1 cut(s) 1545
GluI GCNGC 4 cut(s) 473, 663, 1140, 1313
GsaI CCCAGC 1 cut(s) 739
HaeIII GGCC 3 cut(s) 296, 1334, 1370
HapII CCGG 4 cut(s) 23, 52, 798, 1021
HhaI GCGC 1 cut(s) 1546
Hin1II CATG 8 cut(s) 102, 200, 242, 275, 485, 1390, 1413, 1477
Hin6I GCGC 1 cut(s) 1544
HinP1I GCGC 1 cut(s) 1544
HindIII AAGCTT 2 cut(s) 865, 1046
HinfI GANTC 7 cut(s) 68, 266, 313, 793, 964, 1037, 1465
HpaII CCGG 4 cut(s) 23, 52, 798, 1021
HphI GGTGA 3 cut(s) 879, 973, 1398
Hpy166II GTNNAC 3 cut(s) 277, 613, 745
Hpy188I TCNGA 9 cut(s) 9, 63, 81, 210, 312, 554, 884, 1177, 1194
Hpy188III TCNNGA 8 cut(s) 112, 671, 686, 854, 919, 1097, 1130, 1484
Hpy8I GTNNAC 3 cut(s) 277, 613, 745
Hpy99I CGWCG 2 cut(s) 94, 257
HpyAV CCTTC 1 cut(s) 540
HpyCH4III ACNGT 5 cut(s) 308, 560, 1159, 1172, 1242
HpyCH4IV ACGT 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 2 cut(s) 478, 999
HpyF3I CTNAG 5 cut(s) 544, 551, 597, 868, 917
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 8 cut(s) 102, 200, 242, 275, 485, 1390, 1413, 1477
HspAI GCGC 1 cut(s) 1544
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 9 cut(s) 4, 114, 175, 322, 540, 547, 783, 884, 1492
LmnI GCTCC 2 cut(s) 442, 737
Lsp1109I GCAGC 4 cut(s) 459, 674, 1126, 1299
LweI GCATC 3 cut(s) 214, 1437, 1477
MaeI CTAG 4 cut(s) 168, 320, 1070, 1251
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 5 cut(s) 560, 587, 647, 713, 1236
MalI GATC 9 cut(s) 6, 116, 177, 324, 542, 549, 785, 886, 1494
MboI GATC 9 cut(s) 4, 114, 175, 322, 540, 547, 783, 884, 1492
MboII GAAGA 5 cut(s) 569, 1064, 1220, 1283, 1409
MflI RGATCY 4 cut(s) 322, 540, 547, 1492
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 8 cut(s) 393, 703, 923, 1133, 1196, 1227, 1402, 1567
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 787
MmeI TCCRAC 2 cut(s) 1014, 1418
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 7 cut(s) 392, 456, 491, 863, 1202, 1364, 1451
MslI CAYNNNNRTG 2 cut(s) 333, 819
Msp20I TGGCCA 1 cut(s) 296
MspI CCGG 4 cut(s) 23, 52, 798, 1021
MspR9I CCNGG 2 cut(s) 438, 798
Mva1269I GAATGC 1 cut(s) 414
MvaI CCWGG 1 cut(s) 438
MwoI GCNNNNNNNGC 2 cut(s) 478, 999
NciI CCSGG 1 cut(s) 798
NdeII GATC 9 cut(s) 4, 114, 175, 322, 540, 547, 783, 884, 1492
NlaIII CATG 8 cut(s) 102, 200, 242, 275, 485, 1390, 1413, 1477
NlaIV GGNNCC 1 cut(s) 407
NmeAIII GCCGAG 1 cut(s) 1257
NmuCI GTSAC 1 cut(s) 587
NspI RCATGY 1 cut(s) 485
PctI GAATGC 1 cut(s) 414
PfeI GAWTC 6 cut(s) 68, 266, 313, 964, 1037, 1465
PflMI CCANNNNNTGG 1 cut(s) 742
PkrI GCNGC 4 cut(s) 474, 664, 1141, 1314
PleI GAGTC 1 cut(s) 787
PpsI GAGTC 1 cut(s) 787
PshBI ATTAAT 1 cut(s) 392
PsiI TTATAA 1 cut(s) 1166
Psp6I CCWGG 1 cut(s) 436
PspFI CCCAGC 1 cut(s) 735
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 1 cut(s) 745
PsrI GAACNNNNNNTAC 2 cut(s) 1203, 1235
PstNI CAGNNNCTG 1 cut(s) 558
PsuI RGATCY 4 cut(s) 322, 540, 547, 1492
RsaI GTAC 3 cut(s) 353, 805, 1221
RsaNI GTAC 3 cut(s) 352, 804, 1220
RseI CAYNNNNRTG 2 cut(s) 333, 819
SaqAI TTAA 7 cut(s) 392, 456, 491, 863, 1202, 1364, 1451
SatI GCNGC 4 cut(s) 473, 663, 1140, 1313
Sau3AI GATC 9 cut(s) 4, 114, 175, 322, 540, 547, 783, 884, 1492
Sau96I GGNCC 1 cut(s) 745
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 1 cut(s) 787
ScrFI CCNGG 2 cut(s) 438, 798
SfaNI GCATC 3 cut(s) 214, 1437, 1477
SfcI CTRYAG 3 cut(s) 277, 355, 631
SinI GGWCC 1 cut(s) 745
SmiMI CAYNNNNRTG 2 cut(s) 333, 819
SmlI CTYRAG 3 cut(s) 184, 536, 854
SmoI CTYRAG 3 cut(s) 184, 536, 854
Sse9I AATT 8 cut(s) 393, 703, 923, 1133, 1196, 1227, 1402, 1567
SsiI CCGC 2 cut(s) 1024, 1315
SspMI CTAG 4 cut(s) 168, 320, 1070, 1251
StyD4I CCNGG 2 cut(s) 436, 796
StyI CCWWGG 1 cut(s) 1519
TaaI ACNGT 5 cut(s) 308, 560, 1159, 1172, 1242
TaiI ACGT 1 cut(s) 92
TaqI TCGA 7 cut(s) 92, 252, 372, 672, 1129, 1154, 1499
TasI AATT 8 cut(s) 393, 703, 923, 1133, 1196, 1227, 1402, 1567
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 6 cut(s) 68, 266, 313, 964, 1037, 1465
Tru1I TTAA 7 cut(s) 392, 456, 491, 863, 1202, 1364, 1451
Tru9I TTAA 7 cut(s) 392, 456, 491, 863, 1202, 1364, 1451
TscAI CASTG 3 cut(s) 230, 311, 747
TseFI GTSAC 1 cut(s) 587
TseI GCWGC 4 cut(s) 472, 662, 1139, 1312
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 7 cut(s) 168, 213, 255, 378, 889, 1375, 1490
TspGWI ACGGA 2 cut(s) 65, 398
TspRI CASTG 3 cut(s) 230, 311, 747
Van91I CCANNNNNTGG 1 cut(s) 742
VpaK11BI GGWCC 1 cut(s) 745
VspI ATTAAT 1 cut(s) 392
XapI RAATTY 2 cut(s) 1133, 1402
XceI RCATGY 1 cut(s) 485
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 4 cut(s) 168, 320, 1070, 1251
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.