Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002272

Physical Location & Seq

Genomic Coordinates Forward (+)

3843592 .. 3845630

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G054600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGCAGTCCTCTGAATTTAATTTTTGTATGAAAAGTGAAGATGGTCTGGATCGAAAGAGGAAAAGTGAGGAGTCTGTAACTTCTGTGGACGATCAGAAAAGGATAGTTCAGAAAAGGATAGTTCACCTTAGGCTGACAGGGACACTTAACAAGAAAGAGCAAGCCTCTGATATAGACCGTTGGATCAAATTGGTCATCAAACACTATGTCCAAGTGCTGGAGCTCCACATAAACATATTATTCAATTATATTGATAAATTAAGCCCAAGGTACAGTTTTCCTCCTGCTAGTTCTGATCTTGGGTCATTAGTTGTATTGAGGTTAAGTTCTTGTGATATTTCCAAGGAAGCCTTAAAGCAAGAGGGCATGAGATTTAGCTGCCTAAAAGAGCTCAGTTTGTCACTTGTGGATTTGAATGGATTAACCAATGAGCTCCTTTCTAGATGTCCTTCTATTGAGAATTTAAAATTCCGTGCCTGTAGAAACCTAAAAGATCTTCAGCTCTGTGGATTTTCCAAGCTCAAGAATGTTGACCTAGACACTACTACTAGAGTTCATAGCTACAAGATTGAAGCATCCAATCTTCAAACTCTTCCAATCAACTGCAGTAATTTAAAGGAGTGGATATTGGAAACTCCTCGCAGTGAAATTCGCGCTCAATATATTGAGAAACTTCTTTTGAAATTTCCCTTTCTTGAGAAGATAAACTTGTCAGTCTCTTATAAATCAACAGAGCTGAAAATCTTGAGTCACCAACTCAAGGCATTAACATTGAATTTCCAAGATGACACTATGATAAAGAAGATCACCATAGAGACTCCCAACCTTGTTTCTTACAAACACGCCGGTCACGAACTTCAGCCGTCCTTTTCTTTGAATTCTATGAACCTAGAAGAAGTTGATCTTACCCTAGAACCCAGGAGTGATATTGGCACTTCATGGTTTCTTCAACTGCTCGAATATCTTGGAAAGTTCACGCCAAAACAAGGGTTGGTCTTAAAATTTTTTACTCCCCCAGTTCTAGATCTGCTTCCGCATCCCCTTCTATTGTTGGAGGTCTTTATTGGCAGAGGCTTGCTAGATGACAGAGCCAACTCATTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

369

Amino Acids

42.24

Weight (kDa)

8.53

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26980 FvH4_6g32452 FvH4_6g32461 FvH4_6g32741
prunus_persica	Prupe.3G054600_v2.0.a1 Prupe.3G054700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395301
rosa_laevigata	RLG00000020089 RLG00000020183
rosa_multiflora	Rmu_sc0001483.1_g000030 Rmu_sc0002727.1_g000001 Rmu_sc0005789.1_g000002 Rmu_sc0010454.1_g000003 Rmu_sc0010817.1_g000032 Rmu_sc0035624.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434870 Rroxscaffold_2G00100290 Rroxscaffold_2G00103790 Rroxscaffold_2G00104560
rosa_rugosa	Rorug03G0358200
rosa_samantha	Rh2AG420800 Rh2AG439900 Rh2AG449200 Rh2BG425500 Rh2BG430600 Rh2BG449900 Rh2BG461600 Rh2CG407800 Rh2CG426900 Rh2CG436100 Rh2DG440500 Rh2DG459800 Rh2DG470800 Rh4AG058300 Rh4BG057100 Rh4CG062900 Rh4DG053800 Rh6CG063800 Rh6CG064600 Rh6DG060900 Rh6DG061600
rosa_wichuraiana	Rw2G035990 Rw4G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	723
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccII	CGCG	1 cut(s)	654
AciI	CCGC	1 cut(s)	1034
AclWI	GGATC	2 cut(s)	57, 191
AcsI	RAATTY	8 cut(s)	14, 460, 467, 648, 683, 775, 877, 1001
AcuI	CTGAAG	2 cut(s)	482, 842
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	217, 760, 986
AgsI	TTSAA	8 cut(s)	244, 415, 572, 587, 682, 775, 877, 950
AjnI	CCWGG	1 cut(s)	917
AluBI	AGCT	8 cut(s)	223, 378, 391, 433, 502, 520, 561, 736
AluI	AGCT	8 cut(s)	223, 378, 391, 433, 502, 520, 561, 736
Alw21I	GWGCWC	3 cut(s)	225, 393, 435
Alw26I	GTCTC	2 cut(s)	721, 809
AlwI	GGATC	2 cut(s)	57, 191
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	8 cut(s)	14, 460, 467, 648, 683, 775, 877, 1001
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AspLEI	GCGC	1 cut(s)	656
AsuHPI	GGTGA	3 cut(s)	116, 743, 799
AxyI	CCTNAGG	1 cut(s)	128
BanII	GRGCYC	3 cut(s)	225, 393, 435
Bbv12I	GWGCWC	3 cut(s)	225, 393, 435
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	1 cut(s)	847
BciT130I	CCWGG	1 cut(s)	919
BcoDI	GTCTC	2 cut(s)	721, 809
BfaI	CTAG	8 cut(s)	288, 441, 536, 549, 890, 911, 1022, 1079
BfmI	CTRYAG	2 cut(s)	478, 604
BglII	AGATCT	2 cut(s)	493, 1024
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	919
BmrFI	CCNGG	1 cut(s)	919
BmrI	ACTGGG	1 cut(s)	1010
BmsI	GCATC	2 cut(s)	584, 1045
BmuI	ACTGGG	1 cut(s)	1010
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	1 cut(s)	239
BpuEI	CTTGAG	4 cut(s)	506, 716, 743, 766
BsaJI	CCNNGG	3 cut(s)	266, 342, 917
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 760, 986
Bse118I	RCCGGY	1 cut(s)	845
Bse1I	ACTGG	1 cut(s)	1016
Bse21I	CCTNAGG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	919
BseDI	CCNNGG	3 cut(s)	266, 342, 917
BseGI	GGATG	2 cut(s)	575, 1036
BseLI	CCNNNNNNNGG	3 cut(s)	217, 760, 986
BseMII	CTCAG	1 cut(s)	406
BseNI	ACTGG	1 cut(s)	1016
BseRI	GAGGAG	2 cut(s)	83, 627
BseXI	GCAGC	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	654
BsiHKAI	GWGCWC	3 cut(s)	225, 393, 435
BsiSI	CCGG	1 cut(s)	846
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	3 cut(s)	217, 760, 986
BsmAI	GTCTC	2 cut(s)	721, 809
BsmFI	GGGAC	1 cut(s)	154
Bsp1286I	GDGCHC	3 cut(s)	225, 393, 435
Bsp143I	GATC	8 cut(s)	49, 91, 183, 295, 493, 804, 901, 1024
BspACI	CCGC	1 cut(s)	1034
BspCNI	CTCAG	1 cut(s)	405
BspFNI	CGCG	1 cut(s)	654
BspMAI	CTGCAG	1 cut(s)	608
BspPI	GGATC	2 cut(s)	57, 191
BsrFI	RCCGGY	1 cut(s)	845
BsrI	ACTGG	1 cut(s)	1016
BssAI	RCCGGY	1 cut(s)	845
BssECI	CCNNGG	3 cut(s)	266, 342, 917
BssMI	GATC	8 cut(s)	49, 91, 183, 295, 493, 804, 901, 1024
BssT1I	CCWWGG	2 cut(s)	266, 342
Bst2UI	CCWGG	1 cut(s)	919
Bst4CI	ACNGT	2 cut(s)	179, 275
Bst6I	CTCTTC	1 cut(s)	597
BstC8I	GCNNGC	2 cut(s)	162, 1076
BstDEI	CTNAG	2 cut(s)	128, 392
BstF5I	GGATG	2 cut(s)	575, 1036
BstFNI	CGCG	1 cut(s)	654
BstHHI	GCGC	1 cut(s)	656
BstKTI	GATC	8 cut(s)	52, 94, 186, 298, 496, 807, 904, 1027
BstMAI	GTCTC	2 cut(s)	721, 809
BstMBI	GATC	8 cut(s)	49, 91, 183, 295, 493, 804, 901, 1024
BstNI	CCWGG	1 cut(s)	919
BstSCI	CCNGG	1 cut(s)	917
BstSFI	CTRYAG	2 cut(s)	478, 604
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	365
BstX2I	RGATCY	2 cut(s)	493, 1024
BstYI	RGATCY	2 cut(s)	493, 1024
Bsu36I	CCTNAGG	1 cut(s)	128
BtsCI	GGATG	2 cut(s)	575, 1036
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	649
Cac8I	GCNNGC	2 cut(s)	162, 1076
CfoI	GCGC	1 cut(s)	656
Cfr10I	RCCGGY	1 cut(s)	845
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	2 cut(s)	367, 939
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	128, 392
DpnI	GATC	8 cut(s)	51, 93, 185, 297, 495, 806, 903, 1026
DpnII	GATC	8 cut(s)	49, 91, 183, 295, 493, 804, 901, 1024
DraI	TTTAAA	2 cut(s)	465, 615
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Ecl136II	GAGCTC	3 cut(s)	223, 391, 433
Eco130I	CCWWGG	2 cut(s)	266, 342
Eco24I	GRGCYC	3 cut(s)	225, 393, 435
Eco53kI	GAGCTC	3 cut(s)	223, 391, 433
Eco57I	CTGAAG	2 cut(s)	482, 842
Eco81I	CCTNAGG	1 cut(s)	128
EcoICRI	GAGCTC	3 cut(s)	223, 391, 433
EcoRI	GAATTC	1 cut(s)	877
EcoRII	CCWGG	1 cut(s)	917
EcoT14I	CCWWGG	2 cut(s)	266, 342
EcoT38I	GRGCYC	3 cut(s)	225, 393, 435
ErhI	CCWWGG	2 cut(s)	266, 342
FaeI	CATG	2 cut(s)	370, 942
FalI	AAGNNNNNCTT	6 cut(s)	335, 367, 692, 724, 888, 920
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	2 cut(s)	366, 938
Fnu4HI	GCNGC	1 cut(s)	379
FokI	GGATG	2 cut(s)	562, 1023
FriOI	GRGCYC	3 cut(s)	225, 393, 435
Fsp4HI	GCNGC	1 cut(s)	379
FspBI	CTAG	8 cut(s)	288, 441, 536, 549, 890, 911, 1022, 1079
GlaI	GCGC	1 cut(s)	655
GluI	GCNGC	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	239
HapII	CCGG	1 cut(s)	846
HhaI	GCGC	1 cut(s)	656
Hin1II	CATG	2 cut(s)	370, 942
Hin6I	GCGC	1 cut(s)	654
HinP1I	GCGC	1 cut(s)	654
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	3 cut(s)	71, 748, 817
HpaII	CCGG	1 cut(s)	846
HphI	GGTGA	3 cut(s)	116, 743, 799
Hpy166II	GTNNAC	4 cut(s)	88, 124, 532, 975
Hpy188I	TCNGA	5 cut(s)	13, 96, 111, 169, 295
Hpy188III	TCNNGA	7 cut(s)	47, 441, 523, 695, 745, 851, 1022
Hpy8I	GTNNAC	4 cut(s)	88, 124, 532, 975
HpyAV	CCTTC	2 cut(s)	459, 1052
HpyCH4III	ACNGT	2 cut(s)	179, 275
HpyCH4V	TGCA	2 cut(s)	4, 606
HpyF3I	CTNAG	2 cut(s)	128, 392
Hsp92II	CATG	2 cut(s)	370, 942
HspAI	GCGC	1 cut(s)	654
Kzo9I	GATC	8 cut(s)	49, 91, 183, 295, 493, 804, 901, 1024
LmnI	GCTCC	3 cut(s)	220, 228, 438
LpnPI	CCDG	9 cut(s)	32, 123, 203, 297, 490, 859, 904, 931, 1029
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	2 cut(s)	584, 1045
MaeI	CTAG	8 cut(s)	288, 441, 536, 549, 890, 911, 1022, 1079
MaeIII	GTNAC	4 cut(s)	76, 399, 749, 848
MalI	GATC	8 cut(s)	51, 93, 185, 297, 495, 806, 903, 1026
MboI	GATC	8 cut(s)	49, 91, 183, 295, 493, 804, 901, 1024
MboII	GAAGA	8 cut(s)	50, 488, 575, 584, 712, 814, 905, 938
MflI	RGATCY	2 cut(s)	493, 1024
MhlI	GDGCHC	3 cut(s)	225, 393, 435
MlyI	GAGTC	3 cut(s)	80, 757, 811
MmeI	TCCRAC	2 cut(s)	161, 1032
MspI	CCGG	1 cut(s)	846
MspR9I	CCNGG	1 cut(s)	919
MvaI	CCWGG	1 cut(s)	919
MvnI	CGCG	1 cut(s)	654
NdeII	GATC	8 cut(s)	49, 91, 183, 295, 493, 804, 901, 1024
NlaIII	CATG	2 cut(s)	370, 942
NmuCI	GTSAC	3 cut(s)	399, 749, 848
PcsI	WCGNNNNNNNCGW	1 cut(s)	849
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	380
PleI	GAGTC	3 cut(s)	79, 756, 811
PpsI	GAGTC	3 cut(s)	79, 756, 811
PsiI	TTATAA	1 cut(s)	723
Psp124BI	GAGCTC	3 cut(s)	225, 393, 435
Psp6I	CCWGG	1 cut(s)	917
PspGI	CCWGG	1 cut(s)	917
PstI	CTGCAG	1 cut(s)	608
PsuI	RGATCY	2 cut(s)	493, 1024
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SacI	GAGCTC	3 cut(s)	225, 393, 435
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	8 cut(s)	49, 91, 183, 295, 493, 804, 901, 1024
SchI	GAGTC	3 cut(s)	80, 757, 811
ScrFI	CCNGG	1 cut(s)	919
SduI	GDGCHC	3 cut(s)	225, 393, 435
SfaNI	GCATC	2 cut(s)	584, 1045
SfcI	CTRYAG	2 cut(s)	478, 604
SmlI	CTYRAG	4 cut(s)	521, 695, 745, 758
SmoI	CTYRAG	4 cut(s)	521, 695, 745, 758
SsiI	CCGC	1 cut(s)	1034
SspMI	CTAG	8 cut(s)	288, 441, 536, 549, 890, 911, 1022, 1079
SstI	GAGCTC	3 cut(s)	225, 393, 435
StyD4I	CCNGG	1 cut(s)	917
StyI	CCWWGG	2 cut(s)	266, 342
TaaI	ACNGT	2 cut(s)	179, 275
TaqI	TCGA	2 cut(s)	52, 957
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	3 cut(s)	399, 749, 848
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	3 cut(s)	399, 749, 848
TspDTI	ATGAA	4 cut(s)	44, 545, 899, 927
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	1 cut(s)	649
Van91I	CCANNNNNTGG	1 cut(s)	217
XapI	RAATTY	8 cut(s)	14, 460, 467, 648, 683, 775, 877, 1001
XbaI	TCTAGA	2 cut(s)	440, 1021
XspI	CTAG	8 cut(s)	288, 441, 536, 549, 890, 911, 1022, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.