Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002272

Physical Location & Seq

Genomic Coordinates Reverse (-)

3848211 .. 3849017

Gene Structure 807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G054700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTTCACTAGACTAGTTTACAGTATTTTTTTGTCAAAAAAAATAACAAAAAGAAAGAGAAGAAAAAGAAGAGGGAGAAATGATTCAAGCATTCATCCAATTGAGTATCCTCTGAATCGAATATCGGATTTGCCGGATTCGATTAAGCAGAAAATCCTCTGTCGATTGCCTGCCTATGAAGATGCTGTCCGCATGAGCTTCGTGTCGAAAACATGGCAAACCCTATGGAGCTCACTACCAGCCTACCATTTTGATTTCAATTCTGATACGGGACAACCCATCTCTTATTATTATCAAGCAGGCCGGTATCCTAAAAGGAAAAGGTCTGCCGCCACGGCACTGGACGAATCGCTGCTAATGCTCCGTGAGTATGACGATGATCAGAAAAAGGTAATCAATTACTTTAGGCTGAGAGGGAGAGTTCCTTTGCAAAGCCAAGCCTGGAATGTCGACCGTTGGATCAAGCTGGTAACCAAACACTTTGTCAAAGAGCTACATCTCCGCTTCAGTTATGTTGCCGGGGTCCCAAGGTATCGTTTTCCTCCTGCAAGCTTTGATGTTGGGTCATTAGTTGTGTTGAGTTTAAGCCATTGTGTTTTGGACCAAGCTTTGGTTCAAGAGGGGAGGAGGTTTTGTTGCCTAAACGAGCTTAGTTTTTCTTATGTTGATTTGAATGGGCTAGTCACGGACCTCCTTTCTAGATGCCCTTCACTTGTAACACTGGAATTCTACCGGTGCGAAAACACTCAGCATACTCAACTTGGTGATCTTACAAAGCCGATCAAGACGGTGAACATTGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

269

Amino Acids

31.42

Weight (kDa)

9.67

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26980 FvH4_6g32452 FvH4_6g32461 FvH4_6g32741
prunus_persica	Prupe.3G054600_v2.0.a1 Prupe.3G054700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395301
rosa_laevigata	RLG00000020089 RLG00000020183
rosa_multiflora	Rmu_sc0001483.1_g000030 Rmu_sc0002727.1_g000001 Rmu_sc0005789.1_g000002 Rmu_sc0010454.1_g000003 Rmu_sc0010817.1_g000032 Rmu_sc0035624.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434870 Rroxscaffold_2G00100290 Rroxscaffold_2G00103790 Rroxscaffold_2G00104560
rosa_rugosa	Rorug03G0358200
rosa_samantha	Rh2AG420800 Rh2AG439900 Rh2AG449200 Rh2BG425500 Rh2BG430600 Rh2BG449900 Rh2BG461600 Rh2CG407800 Rh2CG426900 Rh2CG436100 Rh2DG440500 Rh2DG459800 Rh2DG470800 Rh4AG058300 Rh4BG057100 Rh4CG062900 Rh4DG053800 Rh6CG063800 Rh6CG064600 Rh6DG060900 Rh6DG061600
rosa_wichuraiana	Rw2G035990 Rw4G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccI	GTMKAC	1 cut(s)	450
AciI	CCGC	3 cut(s)	190, 330, 502
AclWI	GGATC	1 cut(s)	467
AcsI	RAATTY	2 cut(s)	725, 800
AcuI	CTGAAG	1 cut(s)	490
AfiI	CCNNNNNNNGG	1 cut(s)	610
AgeI	ACCGGT	1 cut(s)	732
AgsI	TTSAA	5 cut(s)	87, 259, 617, 673, 800
AhlI	ACTAGT	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	440
AjuI	GAANNNNNNNTTGG	2 cut(s)	597, 629
AluBI	AGCT	7 cut(s)	198, 231, 466, 493, 552, 608, 649
AluI	AGCT	7 cut(s)	198, 231, 466, 493, 552, 608, 649
Alw21I	GWGCWC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	2 cut(s)	725, 800
ArsI	GACNNNNNNTTYG	2 cut(s)	468, 500
AsiGI	ACCGGT	1 cut(s)	732
Asp700I	GAANNNNTTC	1 cut(s)	82
AspS9I	GGNCC	3 cut(s)	523, 601, 688
AsuC2I	CCSGG	1 cut(s)	520
AsuHPI	GGTGA	2 cut(s)	776, 802
AvaII	GGWCC	3 cut(s)	523, 601, 688
BanII	GRGCYC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	351
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	1 cut(s)	442
BciVI	GTATCC	2 cut(s)	117, 318
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	520
BcuI	ACTAGT	1 cut(s)	13
BfaI	CTAG	4 cut(s)	9, 14, 680, 699
BfuI	GTATCC	2 cut(s)	117, 318
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	2 cut(s)	330, 353
BlsI	GCNGC	2 cut(s)	331, 354
Bme1390I	CCNGG	2 cut(s)	442, 520
Bme18I	GGWCC	3 cut(s)	523, 601, 688
BmgT120I	GGNCC	3 cut(s)	523, 601, 688
BmiI	GGNNCC	2 cut(s)	524, 525
BmrFI	CCNGG	2 cut(s)	442, 520
BmsI	GCATC	2 cut(s)	172, 692
BpuMI	CCSGG	1 cut(s)	520
BsaJI	CCNNGG	3 cut(s)	333, 519, 527
BsaWI	WCCGGW	1 cut(s)	732
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	1 cut(s)	610
Bse118I	RCCGGY	2 cut(s)	303, 732
Bse1I	ACTGG	2 cut(s)	345, 726
BseBI	CCWGG	1 cut(s)	442
BseDI	CCNNGG	3 cut(s)	333, 519, 527
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	610
BseMII	CTCAG	2 cut(s)	401, 761
BseNI	ACTGG	2 cut(s)	345, 726
BseRI	GAGGAG	1 cut(s)	640
BseXI	GCAGC	1 cut(s)	339
Bsh1285I	CGRYCG	1 cut(s)	454
BshFI	GGCC	1 cut(s)	303
BshTI	ACCGGT	1 cut(s)	732
BsiEI	CGRYCG	1 cut(s)	454
BsiHKAI	GWGCWC	1 cut(s)	233
BsiSI	CCGG	4 cut(s)	134, 304, 519, 733
BslFI	GGGAC	2 cut(s)	285, 509
BslI	CCNNNNNNNGG	1 cut(s)	610
BsmFI	GGGAC	2 cut(s)	285, 509
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	4 cut(s)	379, 459, 766, 780
BspACI	CCGC	3 cut(s)	190, 330, 502
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	2 cut(s)	402, 760
BspLI	GGNNCC	2 cut(s)	524, 525
BspPI	GGATC	1 cut(s)	467
BsrFI	RCCGGY	2 cut(s)	303, 732
BsrI	ACTGG	2 cut(s)	345, 726
BssAI	RCCGGY	2 cut(s)	303, 732
BssECI	CCNNGG	3 cut(s)	333, 519, 527
BssMI	GATC	4 cut(s)	379, 459, 766, 780
BssT1I	CCWWGG	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	3 cut(s)	23, 455, 790
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	3 cut(s)	171, 301, 550
BstDEI	CTNAG	3 cut(s)	410, 650, 747
BstDSI	CCRYGG	1 cut(s)	333
BstEII	GGTNACC	1 cut(s)	469
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	4 cut(s)	382, 462, 769, 783
BstMBI	GATC	4 cut(s)	379, 459, 766, 780
BstMCI	CGRYCG	1 cut(s)	454
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 358
BstNI	CCWGG	1 cut(s)	442
BstPI	GGTNACC	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	440, 518
BstV1I	GCAGC	1 cut(s)	339
BstXI	CCANNNNNNTGG	1 cut(s)	340
BsuI	GTATCC	2 cut(s)	117, 318
BsuRI	GGCC	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	338, 719
Cac8I	GCNNGC	3 cut(s)	171, 301, 550
Cfr10I	RCCGGY	2 cut(s)	303, 732
Cfr13I	GGNCC	3 cut(s)	523, 601, 688
CspAI	ACCGGT	1 cut(s)	732
CviAII	CATG	2 cut(s)	193, 213
DdeI	CTNAG	3 cut(s)	410, 650, 747
DpnI	GATC	4 cut(s)	381, 461, 768, 782
DpnII	GATC	4 cut(s)	379, 459, 766, 780
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	527
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	3 cut(s)	523, 601, 688
Eco53kI	GAGCTC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	490
Eco91I	GGTNACC	1 cut(s)	469
EcoICRI	GAGCTC	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	523
EcoO65I	GGTNACC	1 cut(s)	469
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	527
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	2 cut(s)	196, 216
FaiI	YATR	8 cut(s)	177, 194, 214, 226, 372, 513, 663, 753
FaqI	GGGAC	2 cut(s)	285, 509
FatI	CATG	2 cut(s)	192, 212
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	2 cut(s)	330, 353
FokI	GGATG	1 cut(s)	81
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	330, 353
FspBI	CTAG	4 cut(s)	9, 14, 680, 699
GluI	GCNGC	2 cut(s)	330, 353
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	4 cut(s)	134, 304, 519, 733
Hin1II	CATG	2 cut(s)	196, 216
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	2 cut(s)	550, 606
HinfI	GANTC	4 cut(s)	83, 115, 137, 347
HpaII	CCGG	4 cut(s)	134, 304, 519, 733
HphI	GGTGA	2 cut(s)	776, 802
Hpy166II	GTNNAC	4 cut(s)	6, 19, 451, 793
Hpy188I	TCNGA	4 cut(s)	114, 127, 265, 384
Hpy188III	TCNNGA	3 cut(s)	617, 699, 784
Hpy8I	GTNNAC	4 cut(s)	6, 19, 451, 793
HpyAV	CCTTC	1 cut(s)	717
HpyCH4III	ACNGT	3 cut(s)	23, 455, 790
HpyCH4V	TGCA	2 cut(s)	430, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 358
HpyF3I	CTNAG	3 cut(s)	410, 650, 747
Hsp92II	CATG	2 cut(s)	196, 216
KflI	GGGWCCC	1 cut(s)	523
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	379, 459, 766, 780
LmnI	GCTCC	2 cut(s)	228, 366
Lsp1109I	GCAGC	1 cut(s)	339
LweI	GCATC	2 cut(s)	172, 692
MaeI	CTAG	4 cut(s)	9, 14, 680, 699
MaeIII	GTNAC	3 cut(s)	469, 682, 715
MalI	GATC	4 cut(s)	381, 461, 768, 782
MboI	GATC	4 cut(s)	379, 459, 766, 780
MboII	GAAGA	3 cut(s)	72, 81, 191
MfeI	CAATTG	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	5 cut(s)	99, 259, 397, 725, 800
MmeI	TCCRAC	1 cut(s)	437
MnlI	CCTC	9 cut(s)	65, 120, 167, 407, 552, 613, 618, 621, 701
MroXI	GAANNNNTTC	1 cut(s)	82
MseI	TTAA	2 cut(s)	144, 584
MspI	CCGG	4 cut(s)	134, 304, 519, 733
MspR9I	CCNGG	2 cut(s)	442, 520
MunI	CAATTG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	442
MwoI	GCNNNNNNNGC	2 cut(s)	335, 358
NciI	CCSGG	1 cut(s)	520
NdeII	GATC	4 cut(s)	379, 459, 766, 780
NlaIII	CATG	2 cut(s)	196, 216
NlaIV	GGNNCC	2 cut(s)	524, 525
NmuCI	GTSAC	1 cut(s)	682
PctI	GAATGC	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	82
PfeI	GAWTC	4 cut(s)	83, 115, 137, 347
PflMI	CCANNNNNTGG	1 cut(s)	610
PinAI	ACCGGT	1 cut(s)	732
PkrI	GCNGC	2 cut(s)	331, 354
PpuMI	RGGWCCY	1 cut(s)	523
Psp124BI	GAGCTC	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	440
PspEI	GGTNACC	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	524, 525
PspPI	GGNCC	3 cut(s)	523, 601, 688
PspPPI	RGGWCCY	1 cut(s)	523
SacI	GAGCTC	1 cut(s)	233
SalI	GTCGAC	1 cut(s)	449
SaqAI	TTAA	2 cut(s)	144, 584
SatI	GCNGC	2 cut(s)	330, 353
Sau3AI	GATC	4 cut(s)	379, 459, 766, 780
Sau96I	GGNCC	3 cut(s)	523, 601, 688
ScrFI	CCNGG	2 cut(s)	442, 520
SduI	GDGCHC	1 cut(s)	233
SfaNI	GCATC	2 cut(s)	172, 692
SinI	GGWCC	3 cut(s)	523, 601, 688
SpeI	ACTAGT	1 cut(s)	13
Sse9I	AATT	5 cut(s)	99, 259, 397, 725, 800
SsiI	CCGC	3 cut(s)	190, 330, 502
SspMI	CTAG	4 cut(s)	9, 14, 680, 699
SstI	GAGCTC	1 cut(s)	233
StyD4I	CCNGG	2 cut(s)	440, 518
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	3 cut(s)	23, 455, 790
TaqI	TCGA	5 cut(s)	118, 140, 163, 206, 450
TasI	AATT	5 cut(s)	99, 259, 397, 725, 800
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	4 cut(s)	83, 115, 137, 347
Tru1I	TTAA	2 cut(s)	144, 584
Tru9I	TTAA	2 cut(s)	144, 584
TscAI	CASTG	2 cut(s)	345, 726
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	2 cut(s)	83, 192
TspGWI	ACGGA	2 cut(s)	353, 701
TspRI	CASTG	2 cut(s)	345, 726
Van91I	CCANNNNNTGG	1 cut(s)	610
VpaK11BI	GGWCC	3 cut(s)	523, 601, 688
XapI	RAATTY	2 cut(s)	725, 800
XbaI	TCTAGA	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	82
XspI	CTAG	4 cut(s)	9, 14, 680, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.