Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005190

Physical Location & Seq

Genomic Coordinates Reverse (-)

8114891 .. 8118560

Gene Structure 3670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13324.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGGGGACAATGGAAACTTTCCTACACTCTCTCTTCATGATGTGTCTGGTGGTGTTTTGGAAGAGTCTAGTATTTATGATGTTGATTATACTGAATACACTAATCACGAATCTTATGAAAATGAAGACAATGATGAGATAGATGAGGACCCTAATGATAGAGATTTTTGGATTGATGAGCGTTATGTACAAAATGTAGAAGAAGATTTGAAGCAATTTGAGAAGATTGTCGTAGATGAAAGACCATGTGATCATCATGTAGAATTTGGAGAAGATTCATCTGATTATGAAGGTAGTGATGACCTAGGAAGTGTTGATAGCTCCTCCTCTGATGATGAAACTCAAGCTTTGTGGGGGAAAAAAGGTCCTACTGTGAGGGTAAAAGAATTTGTACCAGAACATTCGTGTGGAAGAATCATTAGCAATCGCTTTGCCTCTTCTACTTGGTTAGCTTCTAGGTTTGATCAGGAGATTAGATTGAACCCTAAGATGAAGGTTGGTGATTTTATTACTACAGTGAAGGACAAGTATGGCATTATAGTGACCAAAGATCAAGTTTACAAAGCAAGACAAAAGGCTGGAAAGAGTATTCAAGGAAGCATTGAAGAGCAATATGGGCTGCTTCGAGATTATGGAGAAGAATTAATGAGAGTTAATCCTGGAACTACTGTGAAGTTCAAAACTGAGTTGAGGAATGATGAACCTGTTTTTCTAAGGATGTATGTGTGTTATGGAGCACTTAAGACAGGTTTCCTTGAAGGGTGTAGAACTGTTGTTGGTCTTGATGGGTGTCACATTAAAGGTCCGCACAAAGGACAGCTTTTGAGTGCTGTTGGTATTGATGCTAACAATGGCATTTTTCCAATAGCATTTGCTGTTGCTGAAATAGAGAACCGAGATAGTTGGACCTGGTTTCTTGAAATTTTCATTGCTGATATGGGGATCCAAGATGGTGGAGCTGGTTGGGTGTTCATAAGTGATAAACAGAAGGGCTTAGAGGCAGCAATTAAAGATTTGGTGCCAAATGCTGAGCACAGACATTGTGTCAGACACTTTTATAACAATTTCAAAAATGATGGTCATGGTGGGCTTGCATTAAAGCAAACAGTGTGGGGAGCTGCAAAGGCAACAACTATTCCCTGGGTATGTGTGGAGGTAGAGCTGGCAGAGGAGCTGGCAAAGGAGGTGCGCGAGGAGGTGGAGCTGGCAGAGGAGGTGGAGCTGGCAAAGGAGGTAGAGGCAACTAAAATAGTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

420

Amino Acids

47.18

Weight (kDa)

4.64

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MULE	PF10551	258 - 355	4.7e-17	MULE transposase domain
Transposase_mut	PF00872	260 - 356	3.4e-07	Transposase, Mutator family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13324
prunus_persica	Prupe.6G164700_v2.0.a1 Prupe.6G182100_v2.0.a1
pyrus_communis	pycom06g06460 pycom15g24790 pycom15g27610
rosa_chinensis	RchiOBHm_Chr5g0080361
rosa_laevigata	RLG00000018542 RLG00000036161 RLG00000036162
rosa_multiflora	Rmu_sc0007310.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288540 Rroxscaffold_4G00288590 Rroxscaffold_4G00323350
rosa_rugosa	Rorug01G0105500 Rorug01G0166300 Rorug02G0169100
rosa_samantha	Rh1AG080500 Rh1AG329900 Rh1BG311500 Rh1DG137800 Rh1DG343300 Rh2AG387800 Rh2CG375100 Rh3DG100300 Rh5BG152800 Rh5DG277500 Rh6AG151900
rosa_wichuraiana	Rw1G029250 Rw5G024840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1059
AccB1I	GGYRCC	1 cut(s)	1018
AccII	CGCG	1 cut(s)	1191
AciI	CCGC	1 cut(s)	806
AclWI	GGATC	2 cut(s)	937, 950
AcsI	RAATTY	3 cut(s)	263, 386, 921
AfaI	GTAC	2 cut(s)	189, 393
AfiI	CCNNNNNNNGG	1 cut(s)	812
AflII	CTTAAG	1 cut(s)	740
AgsI	TTSAA	8 cut(s)	211, 481, 593, 605, 679, 758, 920, 1069
AhdI	GACNNNNNGTC	1 cut(s)	1043
AjnI	CCWGG	3 cut(s)	658, 908, 1139
Alw21I	GWGCWC	2 cut(s)	739, 1035
AlwI	GGATC	2 cut(s)	937, 950
ApeKI	GCWGC	3 cut(s)	619, 1001, 1118
ApoI	RAATTY	3 cut(s)	263, 386, 921
AseI	ATTAAT	1 cut(s)	644
AspA2I	CCTAGG	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	1191
AspS9I	GGNCC	4 cut(s)	148, 365, 803, 906
AsuHPI	GGTGA	1 cut(s)	512
AvaII	GGWCC	4 cut(s)	148, 365, 803, 906
AvrII	CCTAGG	1 cut(s)	304
BamHI	GGATCC	1 cut(s)	942
BanI	GGYRCC	1 cut(s)	1018
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	2 cut(s)	739, 1035
BbvI	GCAGC	3 cut(s)	606, 1013, 1105
BccI	CCATC	3 cut(s)	779, 944, 1070
BciT130I	CCWGG	3 cut(s)	660, 910, 1141
BclI	TGATCA	2 cut(s)	250, 463
BfaI	CTAG	3 cut(s)	69, 305, 456
BfmI	CTRYAG	1 cut(s)	513
BfrI	CTTAAG	1 cut(s)	740
BisI	GCNGC	3 cut(s)	620, 1002, 1119
BlnI	CCTAGG	1 cut(s)	304
BlpI	GCTNAGC	1 cut(s)	1029
BlsI	GCNGC	3 cut(s)	621, 1003, 1120
Bme1390I	CCNGG	3 cut(s)	660, 910, 1141
Bme18I	GGWCC	4 cut(s)	148, 365, 803, 906
BmeRI	GACNNNNNGTC	1 cut(s)	1043
BmgT120I	GGNCC	4 cut(s)	148, 365, 803, 906
BmiI	GGNNCC	3 cut(s)	150, 944, 1020
BmrFI	CCNGG	3 cut(s)	660, 910, 1141
BmsI	GCATC	1 cut(s)	832
BpiI	GAAGAC	1 cut(s)	132
Bpu1102I	GCTNAGC	1 cut(s)	1029
BpuEI	CTTGAG	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	304, 1139, 1140
Bsc4I	CCNNNNNNNGG	1 cut(s)	812
Bse3DI	GCAATG	1 cut(s)	927
BseBI	CCWGG	3 cut(s)	660, 910, 1141
BseDI	CCNNGG	3 cut(s)	304, 1139, 1140
BseGI	GGATG	1 cut(s)	723
BseLI	CCNNNNNNNGG	1 cut(s)	812
BseMI	GCAATG	1 cut(s)	927
BseMII	CTCAG	2 cut(s)	675, 1020
BseRI	GAGGAG	5 cut(s)	313, 316, 1184, 1208, 1226
BseXI	GCAGC	3 cut(s)	606, 1013, 1105
Bsh1236I	CGCG	1 cut(s)	1191
BshNI	GGYRCC	1 cut(s)	1018
BsiHKAI	GWGCWC	2 cut(s)	739, 1035
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	812
BsmFI	GGGAC	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	739, 1035
Bsp1407I	TGTACA	1 cut(s)	187
Bsp143I	GATC	4 cut(s)	250, 463, 550, 942
Bsp1720I	GCTNAGC	1 cut(s)	1029
BspACI	CCGC	1 cut(s)	806
BspCNI	CTCAG	2 cut(s)	676, 1021
BspFNI	CGCG	1 cut(s)	1191
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	3 cut(s)	150, 944, 1020
BspPI	GGATC	2 cut(s)	937, 950
BspQI	GCTCTTC	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	1018
BspTI	CTTAAG	1 cut(s)	740
BsrDI	GCAATG	1 cut(s)	927
BsrGI	TGTACA	1 cut(s)	187
BssECI	CCNNGG	3 cut(s)	304, 1139, 1140
BssMI	GATC	4 cut(s)	250, 463, 550, 942
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	3 cut(s)	660, 910, 1141
Bst4CI	ACNGT	5 cut(s)	373, 517, 670, 772, 1108
Bst6I	CTCTTC	4 cut(s)	39, 57, 442, 600
BstAFI	CTTAAG	1 cut(s)	740
BstAUI	TGTACA	1 cut(s)	187
BstC8I	GCNNGC	5 cut(s)	1092, 1164, 1176, 1206, 1224
BstDEI	CTNAG	5 cut(s)	486, 684, 713, 994, 1029
BstF5I	GGATG	1 cut(s)	723
BstFNI	CGCG	1 cut(s)	1191
BstHHI	GCGC	1 cut(s)	1191
BstKTI	GATC	4 cut(s)	253, 466, 553, 945
BstMBI	GATC	4 cut(s)	250, 463, 550, 942
BstMWI	GCNNNNNNNGC	2 cut(s)	616, 1124
BstNI	CCWGG	3 cut(s)	660, 910, 1141
BstSCI	CCNGG	3 cut(s)	658, 908, 1139
BstSFI	CTRYAG	1 cut(s)	513
BstUI	CGCG	1 cut(s)	1191
BstV1I	GCAGC	3 cut(s)	606, 1013, 1105
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	942
BstXI	CCANNNNNNTGG	1 cut(s)	953
BstYI	RGATCY	1 cut(s)	942
BtsCI	GGATG	1 cut(s)	723
BtsIMutI	CAGTG	2 cut(s)	522, 1113
Cac8I	GCNNGC	5 cut(s)	1092, 1164, 1176, 1206, 1224
CciI	TCATGA	1 cut(s)	37
CfoI	GCGC	1 cut(s)	1191
Cfr13I	GGNCC	4 cut(s)	148, 365, 803, 906
CsiI	ACCWGGT	1 cut(s)	908
Csp6I	GTAC	2 cut(s)	188, 392
CspCI	CAANNNNNGTGG	4 cut(s)	332, 367, 1091, 1126
CviAII	CATG	4 cut(s)	38, 246, 257, 1082
CviQI	GTAC	2 cut(s)	188, 392
DdeI	CTNAG	5 cut(s)	486, 684, 713, 994, 1029
DpnI	GATC	4 cut(s)	252, 465, 552, 944
DpnII	GATC	4 cut(s)	250, 463, 550, 942
DriI	GACNNNNNGTC	1 cut(s)	1043
Eam1104I	CTCTTC	4 cut(s)	39, 57, 442, 600
Eam1105I	GACNNNNNGTC	1 cut(s)	1043
EarI	CTCTTC	4 cut(s)	39, 57, 442, 600
Eco130I	CCWWGG	1 cut(s)	304
Eco47I	GGWCC	4 cut(s)	148, 365, 803, 906
EcoO109I	RGGNCCY	2 cut(s)	148, 365
EcoRII	CCWGG	3 cut(s)	658, 908, 1139
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	4 cut(s)	41, 249, 260, 1085
FalI	AAGNNNNNCTT	2 cut(s)	804, 836
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	4 cut(s)	37, 245, 256, 1081
FbaI	TGATCA	2 cut(s)	250, 463
Fnu4HI	GCNGC	3 cut(s)	620, 1002, 1119
FokI	GGATG	1 cut(s)	730
Fsp4HI	GCNGC	3 cut(s)	620, 1002, 1119
FspBI	CTAG	3 cut(s)	69, 305, 456
GlaI	GCGC	1 cut(s)	1190
GluI	GCNGC	3 cut(s)	620, 1002, 1119
HhaI	GCGC	1 cut(s)	1191
Hin1II	CATG	4 cut(s)	41, 249, 260, 1085
Hin6I	GCGC	1 cut(s)	1189
HinP1I	GCGC	1 cut(s)	1189
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	4 cut(s)	65, 110, 275, 414
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	2 cut(s)	559, 1255
Hpy188I	TCNGA	3 cut(s)	283, 331, 1049
Hpy188III	TCNNGA	6 cut(s)	38, 107, 467, 626, 782, 917
Hpy8I	GTNNAC	2 cut(s)	559, 1255
HpyAV	CCTTC	5 cut(s)	284, 487, 514, 752, 982
HpyCH4III	ACNGT	5 cut(s)	373, 517, 670, 772, 1108
HpyCH4V	TGCA	2 cut(s)	1094, 1121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	616, 1124
HpyF3I	CTNAG	5 cut(s)	486, 684, 713, 994, 1029
Hsp92II	CATG	4 cut(s)	41, 249, 260, 1085
HspAI	GCGC	1 cut(s)	1189
Ksp22I	TGATCA	2 cut(s)	250, 463
Kzo9I	GATC	4 cut(s)	250, 463, 550, 942
LguI	GCTCTTC	1 cut(s)	600
LmnI	GCTCC	7 cut(s)	326, 734, 956, 1115, 1171, 1201, 1219
Lsp1109I	GCAGC	3 cut(s)	606, 1013, 1105
LweI	GCATC	1 cut(s)	832
MabI	ACCWGGT	1 cut(s)	908
MaeI	CTAG	3 cut(s)	69, 305, 456
MaeIII	GTNAC	2 cut(s)	541, 791
MalI	GATC	4 cut(s)	252, 465, 552, 944
MboI	GATC	4 cut(s)	250, 463, 550, 942
MflI	RGATCY	1 cut(s)	942
MhlI	GDGCHC	2 cut(s)	739, 1035
MluCI	AATT	7 cut(s)	215, 263, 386, 641, 921, 1005, 1063
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	884
MseI	TTAA	6 cut(s)	644, 654, 741, 798, 1008, 1097
MslI	CAYNNNNRTG	2 cut(s)	405, 539
MspCI	CTTAAG	1 cut(s)	740
MspR9I	CCNGG	3 cut(s)	660, 910, 1141
MvaI	CCWGG	3 cut(s)	660, 910, 1141
MvnI	CGCG	1 cut(s)	1191
MwoI	GCNNNNNNNGC	2 cut(s)	616, 1124
NdeII	GATC	4 cut(s)	250, 463, 550, 942
NlaIII	CATG	4 cut(s)	41, 249, 260, 1085
NlaIV	GGNNCC	3 cut(s)	150, 944, 1020
NmuCI	GTSAC	2 cut(s)	541, 791
PagI	TCATGA	1 cut(s)	37
PasI	CCCWGGG	1 cut(s)	1140
PciSI	GCTCTTC	1 cut(s)	600
PfeI	GAWTC	3 cut(s)	110, 275, 414
PfoI	TCCNGGA	1 cut(s)	658
PkrI	GCNGC	3 cut(s)	621, 1003, 1120
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PpuMI	RGGWCCY	2 cut(s)	148, 365
PshBI	ATTAAT	1 cut(s)	644
PsiI	TTATAA	1 cut(s)	1059
Psp5II	RGGWCCY	2 cut(s)	148, 365
Psp6I	CCWGG	3 cut(s)	658, 908, 1139
PspGI	CCWGG	3 cut(s)	658, 908, 1139
PspN4I	GGNNCC	3 cut(s)	150, 944, 1020
PspPI	GGNCC	4 cut(s)	148, 365, 803, 906
PspPPI	RGGWCCY	2 cut(s)	148, 365
PsuI	RGATCY	1 cut(s)	942
RsaI	GTAC	2 cut(s)	189, 393
RsaNI	GTAC	2 cut(s)	188, 392
RseI	CAYNNNNRTG	2 cut(s)	405, 539
SapI	GCTCTTC	1 cut(s)	600
SaqAI	TTAA	6 cut(s)	644, 654, 741, 798, 1008, 1097
SatI	GCNGC	3 cut(s)	620, 1002, 1119
Sau3AI	GATC	4 cut(s)	250, 463, 550, 942
Sau96I	GGNCC	4 cut(s)	148, 365, 803, 906
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	3 cut(s)	660, 910, 1141
SduI	GDGCHC	2 cut(s)	739, 1035
SexAI	ACCWGGT	1 cut(s)	908
SfaNI	GCATC	1 cut(s)	832
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	4 cut(s)	148, 365, 803, 906
SmiMI	CAYNNNNRTG	2 cut(s)	405, 539
SmlI	CTYRAG	2 cut(s)	342, 740
SmoI	CTYRAG	2 cut(s)	342, 740
Sse9I	AATT	7 cut(s)	215, 263, 386, 641, 921, 1005, 1063
SsiI	CCGC	1 cut(s)	806
SspMI	CTAG	3 cut(s)	69, 305, 456
StyD4I	CCNGG	3 cut(s)	658, 908, 1139
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	5 cut(s)	373, 517, 670, 772, 1108
TaqI	TCGA	1 cut(s)	625
TasI	AATT	7 cut(s)	215, 263, 386, 641, 921, 1005, 1063
TatI	WGTACW	1 cut(s)	187
TfiI	GAWTC	3 cut(s)	110, 275, 414
Tru1I	TTAA	6 cut(s)	644, 654, 741, 798, 1008, 1097
Tru9I	TTAA	6 cut(s)	644, 654, 741, 798, 1008, 1097
TscAI	CASTG	2 cut(s)	522, 1113
TseFI	GTSAC	2 cut(s)	541, 791
TseI	GCWGC	3 cut(s)	619, 1001, 1118
Tsp45I	GTSAC	2 cut(s)	541, 791
TspRI	CASTG	2 cut(s)	522, 1113
Vha464I	CTTAAG	1 cut(s)	740
VpaK11BI	GGWCC	4 cut(s)	148, 365, 803, 906
VspI	ATTAAT	1 cut(s)	644
XapI	RAATTY	3 cut(s)	263, 386, 921
XmaJI	CCTAGG	1 cut(s)	304
XspI	CTAG	3 cut(s)	69, 305, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.