RLG00000018542

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005190
Physical Location & Seq
Forward (+)
31531438 .. 31532591
1154 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018542

Sequence Viewer

Length: 1074 bp
ATGGGGGTGTATTTTCTAGTGGAGACTGGAGAGTATGTGGGTGGTTCTGTATGTTGGGCAGACAACTATGATGTTAACTTATTTAGCAAGTGGGACTTGGCAATAATTGCTAGAAATCTTGGATATGATATTGAGAGAATTCAATACTTTTCTACCATAAAACTGATAGTTTGTGGTTGCATAGTTTTGGATGAAACTCTTGCATTTAATGAAGAATCACAAGTTACTCATCATGTTCAAACTAACAATGAATCGGGTACAGATGGGGATGATGAAGCGGATTATGATATAGGACTTGTTGATGTTAATGTCTTGGCAGATAATGATTTGGATGGAGATTCTAGCAATGATGAAGATGTGTTGGATCCTGAAGATGCACAGTGGTTTGTGGATGAAGAACATGTTCAGAGCGATGAAGATATGAGGCAGTTCAAGAGTTGTGTTGTAGATGAAATTGAAGTTCATCATCATGTGGAACCTGGAAAGAAGTTTGATGACTGGGCTATGGACAGCGATGATCTTGAGAGCCTTGACGAGATTTCAAGTGATGCGGAGGTTAATGAGCCTGTTAAGTACGTGAAGCCTAAGAAAAAGCAACCAAGGTTCAAGCAGTATAGAAGAGATACTGACTTACGGGATCCATACTTCAAATTGGGTCTAGAGTTTCCAACTATGGCACAATGTAGGGAGGCCATAAGAGAATTGTCTATCAAATTTGGAAGGCCACTAAGTTTTGACAAAAAAGATTCTGACAAGGTTATAGTGAAATGTCAAGGACAATGTAAGGGAAGTTGTCCCTTTAAAATATATGCATCTATGGTTGGGAATGGTCCTACTGTGAGGGTCAAGACTTATGAGCCATTGCATCACTACGGGAGGTCAAAAAAAATAAAGCATGCTACTTCTACTTGGATAGCAGACAGGTTTGATGAGGTCTTTAGATCCAATCCCAAAATAAAACCTAGAGACTTTATTTGCATGGTGGCTAAGCAGTATGGGATTGATGTTACACTCGATCAATTTTATAAGGCCAAGGAAAAAGCTAAGAGGAGGATACAAGGTGGCATTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

358

Amino Acids

40.98

Weight (kDa)

4.91

Isoelectric Point (pI)

30.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 217 - 274 3.1e-10 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1026
AciI CCGC 2 cut(s) 278, 551
AclWI GGATC 5 cut(s) 359, 372, 632, 645, 936
AcsI RAATTY 2 cut(s) 138, 713
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 2 cut(s) 259, 575
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 7 cut(s) 143, 239, 433, 458, 543, 607, 649
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 1 cut(s) 1043
AluI AGCT 1 cut(s) 1043
Alw26I GTCTC 2 cut(s) 17, 960
AlwI GGATC 5 cut(s) 359, 372, 632, 645, 936
AoxI GGCC 3 cut(s) 690, 722, 1029
ApoI RAATTY 2 cut(s) 138, 713
Asp700I GAANNNNTTC 1 cut(s) 402
AspS9I GGNCC 1 cut(s) 830
AvaII GGWCC 1 cut(s) 830
BamHI GGATCC 2 cut(s) 364, 637
BccI CCATC 2 cut(s) 257, 326
BciT130I CCWGG 1 cut(s) 480
BciVI GTATCC 1 cut(s) 1047
BcoDI GTCTC 2 cut(s) 17, 960
BfaI CTAG 5 cut(s) 17, 111, 342, 659, 963
BfuI GTATCC 1 cut(s) 1047
BlpI GCTNAGC 1 cut(s) 987
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 830
BmgT120I GGNCC 1 cut(s) 830
BmiI GGNNCC 3 cut(s) 366, 477, 639
BmrFI CCNGG 1 cut(s) 480
BmrI ACTGGG 1 cut(s) 508
BmsI GCATC 4 cut(s) 364, 538, 821, 874
BmuI ACTGGG 1 cut(s) 508
BpmI CTGGAG 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 987
BpuEI CTTGAG 1 cut(s) 542
BsaAI YACGTR 1 cut(s) 577
BsaJI CCNNGG 2 cut(s) 599, 1032
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bse1I ACTGG 2 cut(s) 31, 503
Bse3DI GCAATG 2 cut(s) 352, 860
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 599, 1032
BseGI GGATG 4 cut(s) 196, 274, 337, 397
BseMI GCAATG 2 cut(s) 352, 860
BseNI ACTGG 2 cut(s) 31, 503
BseRI GAGGAG 1 cut(s) 1063
BshFI GGCC 3 cut(s) 692, 724, 1031
BslFI GGGAC 2 cut(s) 107, 780
BsmAI GTCTC 2 cut(s) 17, 960
BsmFI GGGAC 2 cut(s) 107, 780
BsmI GAATGC 1 cut(s) 1065
BsnI GGCC 3 cut(s) 692, 724, 1031
Bsp143I GATC 5 cut(s) 364, 517, 637, 941, 1015
Bsp1720I GCTNAGC 1 cut(s) 987
BspACI CCGC 2 cut(s) 278, 551
BspANI GGCC 3 cut(s) 692, 724, 1031
BspLI GGNNCC 3 cut(s) 366, 477, 639
BspPI GGATC 5 cut(s) 359, 372, 632, 645, 936
BsrDI GCAATG 2 cut(s) 352, 860
BsrI ACTGG 2 cut(s) 31, 503
BssECI CCNNGG 2 cut(s) 599, 1032
BssMI GATC 5 cut(s) 364, 517, 637, 941, 1015
BssT1I CCWWGG 2 cut(s) 599, 1032
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 2 cut(s) 381, 838
Bst6I CTCTTC 1 cut(s) 613
BstAPI GCANNNNNTGC 1 cut(s) 107
BstBAI YACGTR 1 cut(s) 577
BstC8I GCNNGC 1 cut(s) 897
BstDEI CTNAG 4 cut(s) 585, 728, 987, 1044
BstF5I GGATG 4 cut(s) 196, 274, 337, 397
BstKTI GATC 5 cut(s) 367, 520, 640, 944, 1018
BstMAI GTCTC 2 cut(s) 17, 960
BstMBI GATC 5 cut(s) 364, 517, 637, 941, 1015
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 1 cut(s) 480
BstNSI RCATGY 2 cut(s) 404, 899
BstSCI CCNGG 1 cut(s) 478
BstX2I RGATCY 3 cut(s) 364, 637, 941
BstYI RGATCY 3 cut(s) 364, 637, 941
BsuI GTATCC 1 cut(s) 1047
BsuRI GGCC 3 cut(s) 692, 724, 1031
BtgZI GCGATG 2 cut(s) 426, 528
BtsCI GGATG 4 cut(s) 196, 274, 337, 397
BtsIMutI CAGTG 1 cut(s) 386
Cac8I GCNNGC 1 cut(s) 897
Cfr13I GGNCC 1 cut(s) 830
Csp6I GTAC 2 cut(s) 258, 574
CviAII CATG 5 cut(s) 233, 401, 470, 896, 979
CviQI GTAC 2 cut(s) 258, 574
DdeI CTNAG 4 cut(s) 585, 728, 987, 1044
DpnI GATC 5 cut(s) 366, 519, 639, 943, 1017
DpnII GATC 5 cut(s) 364, 517, 637, 941, 1015
DraI TTTAAA 1 cut(s) 802
Eam1104I CTCTTC 1 cut(s) 613
EarI CTCTTC 1 cut(s) 613
Eco130I CCWWGG 2 cut(s) 599, 1032
Eco47I GGWCC 1 cut(s) 830
Eco57I CTGAAG 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 2 cut(s) 599, 1032
EcoT22I ATGCAT 1 cut(s) 814
ErhI CCWWGG 2 cut(s) 599, 1032
FaeI CATG 5 cut(s) 236, 404, 473, 899, 982
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 2 cut(s) 107, 780
FatI CATG 5 cut(s) 232, 400, 469, 895, 978
FokI GGATG 4 cut(s) 203, 281, 344, 404
FspBI CTAG 5 cut(s) 17, 111, 342, 659, 963
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 3 cut(s) 692, 724, 1031
Hin1II CATG 5 cut(s) 236, 404, 473, 899, 982
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 4 cut(s) 215, 251, 338, 746
HpaI GTTAAC 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 408, 751
Hpy188III TCNNGA 5 cut(s) 368, 433, 521, 659, 847
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 714
HpyCH4III ACNGT 2 cut(s) 381, 838
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 6 cut(s) 180, 203, 377, 812, 865, 978
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 4 cut(s) 585, 728, 987, 1044
HpySE526I ACGT 1 cut(s) 576
Hsp92II CATG 5 cut(s) 236, 404, 473, 899, 982
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 5 cut(s) 364, 517, 637, 941, 1015
LpnPI CCDG 7 cut(s) 12, 381, 465, 484, 492, 579, 907
LweI GCATC 4 cut(s) 364, 538, 821, 874
MaeI CTAG 5 cut(s) 17, 111, 342, 659, 963
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 2 cut(s) 223, 1006
MalI GATC 5 cut(s) 366, 519, 639, 943, 1017
MboI GATC 5 cut(s) 364, 517, 637, 941, 1015
MboII GAAGA 6 cut(s) 224, 365, 383, 407, 428, 630
MflI RGATCY 3 cut(s) 364, 637, 941
MluCI AATT 7 cut(s) 105, 138, 453, 650, 701, 713, 1019
MmeI TCCRAC 2 cut(s) 342, 692
MnlI CCTC 8 cut(s) 417, 547, 682, 834, 870, 925, 1041, 1044
Mph1103I ATGCAT 1 cut(s) 814
MroXI GAANNNNTTC 1 cut(s) 402
MseI TTAA 6 cut(s) 75, 207, 306, 558, 570, 801
MslI CAYNNNNRTG 1 cut(s) 468
MspR9I CCNGG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 1065
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 5 cut(s) 364, 517, 637, 941, 1015
NlaIII CATG 5 cut(s) 236, 404, 473, 899, 982
NlaIV GGNNCC 3 cut(s) 366, 477, 639
NsiI ATGCAT 1 cut(s) 814
NspI RCATGY 2 cut(s) 404, 899
PaeI GCATGC 1 cut(s) 899
PciI ACATGT 1 cut(s) 400
PctI GAATGC 1 cut(s) 1065
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 4 cut(s) 215, 251, 338, 746
Ppu21I YACGTR 1 cut(s) 577
PscI ACATGT 1 cut(s) 400
PsiI TTATAA 1 cut(s) 1026
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 3 cut(s) 366, 477, 639
PspPI GGNCC 1 cut(s) 830
PsuI RGATCY 3 cut(s) 364, 637, 941
RsaI GTAC 2 cut(s) 259, 575
RsaNI GTAC 2 cut(s) 258, 574
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 6 cut(s) 75, 207, 306, 558, 570, 801
Sau3AI GATC 5 cut(s) 364, 517, 637, 941, 1015
Sau96I GGNCC 1 cut(s) 830
ScrFI CCNGG 1 cut(s) 480
SfaNI GCATC 4 cut(s) 364, 538, 821, 874
SinI GGWCC 1 cut(s) 830
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
SphI GCATGC 1 cut(s) 899
Sse9I AATT 7 cut(s) 105, 138, 453, 650, 701, 713, 1019
SsiI CCGC 2 cut(s) 278, 551
SspMI CTAG 5 cut(s) 17, 111, 342, 659, 963
StyD4I CCNGG 1 cut(s) 478
StyI CCWWGG 2 cut(s) 599, 1032
TaaI ACNGT 2 cut(s) 381, 838
TaiI ACGT 1 cut(s) 579
TaqI TCGA 1 cut(s) 1014
TasI AATT 7 cut(s) 105, 138, 453, 650, 701, 713, 1019
TfiI GAWTC 4 cut(s) 215, 251, 338, 746
Tru1I TTAA 6 cut(s) 75, 207, 306, 558, 570, 801
Tru9I TTAA 6 cut(s) 75, 207, 306, 558, 570, 801
TscAI CASTG 1 cut(s) 386
TspDTI ATGAA 9 cut(s) 207, 225, 264, 288, 366, 408, 429, 452, 465
TspRI CASTG 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 830
XapI RAATTY 2 cut(s) 138, 713
XbaI TCTAGA 1 cut(s) 658
XceI RCATGY 2 cut(s) 404, 899
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 5 cut(s) 17, 111, 342, 659, 963
Zsp2I ATGCAT 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.