Rmu_sc0007310.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007310.1
OG0005190
Physical Location & Seq
Reverse (-)
46707 .. 47297
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007310.1_g000012.1.cds

Sequence Viewer

Length: 591 bp
atgtacccgatagcatttgccatcgttgaagttgaaaatagagagacttggatgtggtttctggaatactttattaatgatgtggagattttaaatgcggaaaatggttgggtatttattagtgacaagcaaaaaggtctacttgatgctattgaagagttgatgcctcaagcggaacataggcattgtgttagacacctctacaataattttaaaggtgctggtcacacaggacttgcattgaagctaggtatgtgggcagcttcgaagtctactactgttccttggtttgaagaagaaatggacaaggtattaaggctgtgtaaagatgctcatgactggttaagaaaaagggctgtaattcattggagtaggtcgcattttaaaactgaggccaaatgtgatatactccttaacaatctttgtgaagcattcaattctgccatattggaagcaagagataaacctatcctaacaatgctggagaggttgagaatgtacttaatgctgaggatggcaaagcaaagggagttgaattggacacaacctgttggaccaagaatatttggtattatcgagaaaaacagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

196

Amino Acids

23.16

Weight (kDa)

7.73

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 139, 272
AciI CCGC 2 cut(s) 98, 173
AfaI GTAC 2 cut(s) 5, 500
AgsI TTSAA 7 cut(s) 29, 35, 155, 244, 293, 436, 535
AluBI AGCT 2 cut(s) 247, 263
AluI AGCT 2 cut(s) 247, 263
Alw26I GTCTC 1 cut(s) 38
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 1 cut(s) 260
AseI ATTAAT 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 554
AsuII TTCGAA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 554
BbvCI CCTCAGC 1 cut(s) 509
BbvI GCAGC 1 cut(s) 272
BccI CCATC 2 cut(s) 29, 508
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 248
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 554
BmgT120I GGNCC 1 cut(s) 554
BmsI GCATC 3 cut(s) 136, 153, 319
BpmI CTGGAG 1 cut(s) 503
Bpu10I CCTNAGC 1 cut(s) 509
Bpu14I TTCGAA 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 2 cut(s) 57, 519
BseMII CTCAG 2 cut(s) 381, 500
BseNI ACTGG 1 cut(s) 344
BseXI GCAGC 1 cut(s) 272
BshFI GGCC 1 cut(s) 395
BsmAI GTCTC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 431
BsnI GGCC 1 cut(s) 395
Bsp119I TTCGAA 1 cut(s) 266
BspACI CCGC 2 cut(s) 98, 173
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 2 cut(s) 382, 501
BspHI TCATGA 1 cut(s) 334
BspT104I TTCGAA 1 cut(s) 266
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 284
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 150
BstBI TTCGAA 1 cut(s) 266
BstDEI CTNAG 2 cut(s) 390, 509
BstF5I GGATG 2 cut(s) 57, 519
BstMAI GTCTC 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 272
BsuRI GGCC 1 cut(s) 395
BtsCI GGATG 2 cut(s) 57, 519
CciI TCATGA 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 554
Csp6I GTAC 2 cut(s) 4, 499
CviAII CATG 1 cut(s) 335
CviJI RGCY 5 cut(s) 247, 263, 319, 356, 395
CviKI_1 RGCY 5 cut(s) 247, 263, 319, 356, 395
CviQI GTAC 2 cut(s) 4, 499
DdeI CTNAG 2 cut(s) 390, 509
DraI TTTAAA 3 cut(s) 93, 214, 385
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 554
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 1 cut(s) 338
FaiI YATR 5 cut(s) 180, 254, 336, 407, 446
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FatI CATG 1 cut(s) 334
FblI GTMKAC 2 cut(s) 139, 272
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 2 cut(s) 64, 526
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 1 cut(s) 248
GluI GCNGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 503
HaeIII GGCC 1 cut(s) 395
Hin1II CATG 1 cut(s) 338
Hpy166II GTNNAC 2 cut(s) 140, 273
Hpy188III TCNNGA 3 cut(s) 62, 335, 577
Hpy8I GTNNAC 2 cut(s) 140, 273
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 390, 509
Hsp92II CATG 1 cut(s) 338
LpnPI CCDG 6 cut(s) 47, 207, 216, 325, 467, 561
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 3 cut(s) 136, 153, 319
MaeI CTAG 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 122, 224
MboII GAAGA 3 cut(s) 167, 305, 308
MluCI AATT 4 cut(s) 208, 360, 436, 535
MmeI TCCRAC 1 cut(s) 532
MnlI CCTC 5 cut(s) 177, 209, 385, 480, 504
MseI TTAA 8 cut(s) 75, 92, 213, 314, 344, 384, 414, 503
Mva1269I GAATGC 1 cut(s) 431
NlaIII CATG 1 cut(s) 338
NmuCI GTSAC 2 cut(s) 122, 224
NspV TTCGAA 1 cut(s) 266
PagI TCATGA 1 cut(s) 334
PctI GAATGC 1 cut(s) 431
PkrI GCNGC 1 cut(s) 262
PshBI ATTAAT 1 cut(s) 75
PspPI GGNCC 1 cut(s) 554
RsaI GTAC 2 cut(s) 5, 500
RsaNI GTAC 2 cut(s) 4, 499
SaqAI TTAA 8 cut(s) 75, 92, 213, 314, 344, 384, 414, 503
SatI GCNGC 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 554
SfaNI GCATC 3 cut(s) 136, 153, 319
SfuI TTCGAA 1 cut(s) 266
SinI GGWCC 1 cut(s) 554
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 4 cut(s) 208, 360, 436, 535
SsiI CCGC 2 cut(s) 98, 173
SspI AATATT 1 cut(s) 564
SspMI CTAG 1 cut(s) 248
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 2 cut(s) 266, 576
TasI AATT 4 cut(s) 208, 360, 436, 535
TatI WGTACW 1 cut(s) 498
Tru1I TTAA 8 cut(s) 75, 92, 213, 314, 344, 384, 414, 503
Tru9I TTAA 8 cut(s) 75, 92, 213, 314, 344, 384, 414, 503
TseFI GTSAC 2 cut(s) 122, 224
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 2 cut(s) 122, 224
TspDTI ATGAA 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 554
VspI ATTAAT 1 cut(s) 75
XmiI GTMKAC 2 cut(s) 139, 272
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.