RchiOBHm_Chr5g0080361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005190
Physical Location & Seq
Forward (+)
86324799 .. 86326565
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35467

Sequence Viewer

Length: 1122 bp
ATGCTGGAGAGGTTGAGAATGTACTTAATGCTGAGGATGGCAAAGCAAAGGGAGTTGAATTGGACACAACCTGTTGGACCAAGAATATTTGGTATTATCGAGAAAAACAGAGAACTGAGTAATAATTGCTATGCTGAATCTTCCATTGGAGGCCATTTCGAGGTCACTCATCTTCATGGAAGAAAATTTTATGTTAATATGGAGGATAGAACTTGTTCATGTAGAAAGTGGGACCTTTGTGGTATTCCATGTTCTCATGCAATGACTTGTCTTGGTTGGATGGATGCAAGTCCATATGATTTTGTACATAACCATTACAAGAGGGAGGCTTATGACCGAGCCTATGGTTACTTCTTTTGCCCAATGTCCAGTCAAGACTTGTGGCCTAAAACTGGTGGCATGCCGATTCTTCCACCACTCTATCACAAACAACCAGGAAGGCCCAAAAAGAGAAGAATTTTAGAACCAAATGAGATTCCCAAAGGTGCAAAAAAGCTACAGAGATATCATGCCCCATCTAAGTGCACACTTTGTAAAAATGAAGGTCATAATAAGAGGACATGTCCTCAGAGAGGACAAGCACTAGAACCTCCTCCTCATGTTCCAGCGAGCGAAAATATGTACAAGGCAAGTGGAACAGCAAGAGGAAGGGCTAGAGGAACCGGCACAAATAGAGGAAGAGGTATTGGAAATTCAATTATGATGGAAGAAGCACAATTTGGACAAGGAACAAGAGGACAAGGAAGACATGGTGTTCAATATGTTAGAGTTGGGGGGACTAGAGGAGGAAGAGGCCAATTTGTTGCTCCAACAAGAGAAAGAGGACAGTTTGAAAGCTTTATTGGAAGGTCACAATCTACAAGTTTCGGTACTAGAGGAGGAGGACAAACATTTGCAAGTGCCGGAAGAGGAAGAAGCCAATTCATTGCTCCAACAAGAGGAAAAGGGCAACCTACAAGCTTTGGTAATGGTGGAGGACAAGCTCTCCCAGGTATTGAAAGAAGAAGGGGACAATATGTCAATCGTGCCACTCGTATAACTCAAGTGACAATGCATTCTACAATCAGTACTGAAGCTACCGCATCTCAACCAATTTCTAAAGCTAGTGACAATGCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

373

Amino Acids

41.59

Weight (kDa)

10.25

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 65 - 88 1.1e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1080
AcsI RAATTY 3 cut(s) 185, 456, 691
AcuI CTGAAG 1 cut(s) 1092
AfaI GTAC 5 cut(s) 23, 306, 623, 871, 1069
AfiI CCNNNNNNNGG 4 cut(s) 160, 392, 572, 938
AflIII ACRYGT 1 cut(s) 560
AgsI TTSAA 5 cut(s) 58, 696, 758, 833, 998
AhdI GACNNNNNGTC 1 cut(s) 1016
AjnI CCWGG 2 cut(s) 433, 988
AjuI GAANNNNNNNTTGG 6 cut(s) 129, 161, 702, 734, 825, 857
AluBI AGCT 6 cut(s) 496, 837, 960, 983, 1076, 1103
AluI AGCT 6 cut(s) 496, 837, 960, 983, 1076, 1103
Alw21I GWGCWC 1 cut(s) 527
Alw44I GTGCAC 1 cut(s) 523
AoxI GGCC 4 cut(s) 151, 383, 440, 793
ApaLI GTGCAC 1 cut(s) 523
ApoI RAATTY 3 cut(s) 185, 456, 691
Asp700I GAANNNNTTC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 77, 232, 441
AvaII GGWCC 2 cut(s) 77, 232
BaeGI GKGCMC 1 cut(s) 527
BbsI GAAGAC 1 cut(s) 751
Bbv12I GWGCWC 1 cut(s) 527
BbvCI CCTCAGC 1 cut(s) 32
BccI CCATC 4 cut(s) 31, 274, 523, 697
BciT130I CCWGG 2 cut(s) 435, 990
BfaI CTAG 5 cut(s) 584, 654, 780, 873, 1104
BfmI CTRYAG 1 cut(s) 497
BmcAI AGTACT 1 cut(s) 1069
Bme1390I CCNGG 2 cut(s) 435, 990
Bme18I GGWCC 2 cut(s) 77, 232
BmeRI GACNNNNNGTC 1 cut(s) 1016
BmgT120I GGNCC 3 cut(s) 77, 232, 441
BmiI GGNNCC 2 cut(s) 233, 661
BmrFI CCNGG 2 cut(s) 435, 990
BmsI GCATC 2 cut(s) 274, 1091
BpiI GAAGAC 1 cut(s) 751
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 1026
BsaJI CCNNGG 1 cut(s) 988
BsaXI ACNNNNNCTCC 2 cut(s) 969, 999
Bsc4I CCNNNNNNNGG 4 cut(s) 160, 392, 572, 938
Bse118I RCCGGY 1 cut(s) 662
Bse1I ACTGG 2 cut(s) 369, 397
Bse3DI GCAATG 2 cut(s) 267, 924
BseBI CCWGG 2 cut(s) 435, 990
BseDI CCNNGG 1 cut(s) 988
BseGI GGATG 3 cut(s) 42, 285, 289
BseLI CCNNNNNNNGG 4 cut(s) 160, 392, 572, 938
BseMI GCAATG 2 cut(s) 267, 924
BseMII CTCAG 3 cut(s) 23, 107, 581
BseNI ACTGG 2 cut(s) 369, 397
BseRI GAGGAG 5 cut(s) 582, 585, 798, 891, 894
BseSI GKGCMC 1 cut(s) 527
BshFI GGCC 4 cut(s) 153, 385, 442, 795
BsiHKAI GWGCWC 1 cut(s) 527
BsiSI CCGG 2 cut(s) 663, 903
BslFI GGGAC 3 cut(s) 245, 790, 1023
BslI CCNNNNNNNGG 4 cut(s) 160, 392, 572, 938
BsmFI GGGAC 3 cut(s) 245, 790, 1023
BsmI GAATGC 2 cut(s) 1054, 1115
BsnI GGCC 4 cut(s) 153, 385, 442, 795
Bsp1286I GDGCHC 1 cut(s) 527
Bsp1407I TGTACA 2 cut(s) 304, 621
BspACI CCGC 1 cut(s) 1080
BspANI GGCC 4 cut(s) 153, 385, 442, 795
BspCNI CTCAG 3 cut(s) 24, 108, 580
BspLI GGNNCC 2 cut(s) 233, 661
BsrDI GCAATG 2 cut(s) 267, 924
BsrFI RCCGGY 1 cut(s) 662
BsrGI TGTACA 2 cut(s) 304, 621
BsrI ACTGG 2 cut(s) 369, 397
BssAI RCCGGY 1 cut(s) 662
BssECI CCNNGG 1 cut(s) 988
Bst2UI CCWGG 2 cut(s) 435, 990
Bst4CI ACNGT 1 cut(s) 828
Bst6I CTCTTC 3 cut(s) 673, 784, 901
BstAUI TGTACA 2 cut(s) 304, 621
BstC8I GCNNGC 2 cut(s) 401, 610
BstDEI CTNAG 4 cut(s) 32, 116, 519, 567
BstENI CCTNNNNNAGG 1 cut(s) 570
BstF5I GGATG 3 cut(s) 42, 285, 289
BstNI CCWGG 2 cut(s) 435, 990
BstNSI RCATGY 2 cut(s) 403, 564
BstSCI CCNGG 2 cut(s) 433, 988
BstSFI CTRYAG 1 cut(s) 497
BstSLI GKGCMC 1 cut(s) 527
BstV2I GAAGAC 1 cut(s) 751
BsuRI GGCC 4 cut(s) 153, 385, 442, 795
BtsCI GGATG 3 cut(s) 42, 285, 289
Cac8I GCNNGC 2 cut(s) 401, 610
Cfr10I RCCGGY 1 cut(s) 662
Cfr13I GGNCC 3 cut(s) 77, 232, 441
Csp6I GTAC 5 cut(s) 22, 305, 622, 870, 1068
CspCI CAANNNNNGTGG 4 cut(s) 362, 397, 613, 648
CviAII CATG 9 cut(s) 176, 219, 249, 257, 400, 509, 561, 599, 749
CviQI GTAC 5 cut(s) 22, 305, 622, 870, 1068
DdeI CTNAG 4 cut(s) 32, 116, 519, 567
DriI GACNNNNNGTC 1 cut(s) 1016
Eam1104I CTCTTC 3 cut(s) 673, 784, 901
Eam1105I GACNNNNNGTC 1 cut(s) 1016
EarI CTCTTC 3 cut(s) 673, 784, 901
Eco32I GATATC 1 cut(s) 506
Eco47I GGWCC 2 cut(s) 77, 232
Eco57I CTGAAG 1 cut(s) 1092
EcoNI CCTNNNNNAGG 1 cut(s) 570
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 433, 988
EcoRV GATATC 1 cut(s) 506
EcoT22I ATGCAT 2 cut(s) 1056, 1117
FaeI CATG 9 cut(s) 179, 222, 252, 260, 403, 512, 564, 602, 752
FaqI GGGAC 3 cut(s) 245, 790, 1023
FatI CATG 9 cut(s) 175, 218, 248, 256, 399, 508, 560, 598, 748
FauNDI CATATG 1 cut(s) 295
FokI GGATG 3 cut(s) 49, 292, 296
FspBI CTAG 5 cut(s) 584, 654, 780, 873, 1104
GsuI CTGGAG 1 cut(s) 26
HaeIII GGCC 4 cut(s) 153, 385, 442, 795
HapII CCGG 2 cut(s) 663, 903
Hin1II CATG 9 cut(s) 179, 222, 252, 260, 403, 512, 564, 602, 752
HindIII AAGCTT 2 cut(s) 835, 958
HinfI GANTC 3 cut(s) 137, 406, 475
HpaII CCGG 2 cut(s) 663, 903
Hpy166II GTNNAC 1 cut(s) 525
Hpy188I TCNGA 1 cut(s) 570
Hpy188III TCNNGA 2 cut(s) 100, 374
Hpy8I GTNNAC 1 cut(s) 525
HpyAV CCTTC 5 cut(s) 432, 536, 642, 840, 999
HpyCH4III ACNGT 1 cut(s) 828
HpyCH4V TGCA 7 cut(s) 260, 287, 488, 525, 896, 1054, 1115
HpyF3I CTNAG 4 cut(s) 32, 116, 519, 567
Hsp92II CATG 9 cut(s) 179, 222, 252, 260, 403, 512, 564, 602, 752
LmnI GCTCC 2 cut(s) 811, 934
LweI GCATC 2 cut(s) 274, 1091
MaeI CTAG 5 cut(s) 584, 654, 780, 873, 1104
MaeIII GTNAC 5 cut(s) 163, 347, 849, 1045, 1106
MhlI GDGCHC 1 cut(s) 527
MmeI TCCRAC 4 cut(s) 55, 257, 833, 956
Mph1103I ATGCAT 2 cut(s) 1056, 1117
MroXI GAANNNNTTC 1 cut(s) 214
MseI TTAA 2 cut(s) 26, 195
MslI CAYNNNNRTG 2 cut(s) 174, 520
MspI CCGG 2 cut(s) 663, 903
MspR9I CCNGG 2 cut(s) 435, 990
Mva1269I GAATGC 2 cut(s) 1054, 1115
MvaI CCWGG 2 cut(s) 435, 990
NdeI CATATG 1 cut(s) 295
NlaIII CATG 9 cut(s) 179, 222, 252, 260, 403, 512, 564, 602, 752
NlaIV GGNNCC 2 cut(s) 233, 661
NmuCI GTSAC 4 cut(s) 163, 849, 1045, 1106
NsiI ATGCAT 2 cut(s) 1056, 1117
NspI RCATGY 2 cut(s) 403, 564
PaeI GCATGC 1 cut(s) 403
PciI ACATGT 1 cut(s) 560
PcsI WCGNNNNNNNCGW 1 cut(s) 1030
PctI GAATGC 2 cut(s) 1054, 1115
PdmI GAANNNNTTC 1 cut(s) 214
PfeI GAWTC 3 cut(s) 137, 406, 475
PpuMI RGGWCCY 1 cut(s) 232
PscI ACATGT 1 cut(s) 560
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 2 cut(s) 433, 988
PspGI CCWGG 2 cut(s) 433, 988
PspN4I GGNNCC 2 cut(s) 233, 661
PspPI GGNCC 3 cut(s) 77, 232, 441
PspPPI RGGWCCY 1 cut(s) 232
PsrI GAACNNNNNNTAC 2 cut(s) 235, 267
RsaI GTAC 5 cut(s) 23, 306, 623, 871, 1069
RsaNI GTAC 5 cut(s) 22, 305, 622, 870, 1068
RseI CAYNNNNRTG 2 cut(s) 174, 520
SaqAI TTAA 2 cut(s) 26, 195
Sau96I GGNCC 3 cut(s) 77, 232, 441
ScaI AGTACT 1 cut(s) 1069
ScrFI CCNGG 2 cut(s) 435, 990
SduI GDGCHC 1 cut(s) 527
SfaNI GCATC 2 cut(s) 274, 1091
SfcI CTRYAG 1 cut(s) 497
SinI GGWCC 2 cut(s) 77, 232
SmiMI CAYNNNNRTG 2 cut(s) 174, 520
SmlI CTYRAG 1 cut(s) 1041
SmoI CTYRAG 1 cut(s) 1041
SphI GCATGC 1 cut(s) 403
SsiI CCGC 1 cut(s) 1080
SspI AATATT 1 cut(s) 87
SspMI CTAG 5 cut(s) 584, 654, 780, 873, 1104
StyD4I CCNGG 2 cut(s) 433, 988
TaaI ACNGT 1 cut(s) 828
TaqI TCGA 2 cut(s) 99, 159
TaqII GACCGA 1 cut(s) 351
TatI WGTACW 4 cut(s) 21, 304, 621, 1067
TfiI GAWTC 3 cut(s) 137, 406, 475
Tru1I TTAA 2 cut(s) 26, 195
Tru9I TTAA 2 cut(s) 26, 195
TseFI GTSAC 4 cut(s) 163, 849, 1045, 1106
Tsp45I GTSAC 4 cut(s) 163, 849, 1045, 1106
TspDTI ATGAA 4 cut(s) 164, 207, 555, 913
VneI GTGCAC 1 cut(s) 523
VpaK11BI GGWCC 2 cut(s) 77, 232
XagI CCTNNNNNAGG 1 cut(s) 570
XapI RAATTY 3 cut(s) 185, 456, 691
XceI RCATGY 2 cut(s) 403, 564
XmnI GAANNNNTTC 1 cut(s) 214
XspI CTAG 5 cut(s) 584, 654, 780, 873, 1104
ZrmI AGTACT 1 cut(s) 1069
Zsp2I ATGCAT 2 cut(s) 1056, 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.