RLG00000036162

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005190
Physical Location & Seq
Forward (+)
76723559 .. 76724676
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036162

Sequence Viewer

Length: 816 bp
ATGACTTGTCTTGGTTGGATGGATGCGAGTCCATATGATTTTGTACATAACCATTACAAGAGGGAGGCTTATGACCGAGCCTATGGTTACTTCATTTCCCCCATGTCTAGTGAAGACTTATGGCCTAAAACTGGTGGCATGACGATTCTTCCCCCACTCTATCACAAACAACCAGGAAGGCCCAAAAAGAGAAGAATTTTAGAACCACATGAGATTCCCAAAGGTGCAAAAAAGCTACAGAGATATCATGCCCCATCTAAGTGCACACTTTGTGAAAATGAAGGTCATAATAAGAGGACATGTCCTCAGCGAGGACAAGTACTAGAACCTCCTCCTCATGTTCCAGCGAGCGAAAATATGTACAATGCAAGTGGAACAGCAAGAGGAAGGGCTAGAGGAACCGGCACAAACAGAGGAAGAGGTATTGGAAATTCAAGTATGACGGAAGAAGGACAATTTGGACAAGGAACAAGAGGACGAGGAAGACATGGTGTTCAATATGTTAGAGTTGGGGGGACTAGAGGAGGAAGAGGCCAATTTGTTGCTCCAACAAGAGCAAGGGGACAATTTGAAAGCTTTATTGGAAGGTCACAATCTACAAGTTTCGGTACTAGAGGAGGAGGGCAAACAATTGCAAGTGCCGGAAGAGGAAGAAGCCAATTCATTGCTCCAACAAGAGGAAAAGGGCAAAACCTACAAGCTTTGGTAATGGTGGAGGACGATCTTCCAGGTATTGGAAGAGGCAGGGGACAATATGTAAGTTCATTTAATTATTCAAAGAACTTTTATTTTGCGTTGAATTACGAGTACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

272

Amino Acids

30.01

Weight (kDa)

10.13

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 734
AcsI RAATTY 2 cut(s) 195, 430
AdeI CACNNNGTG 1 cut(s) 272
AfaI GTAC 5 cut(s) 45, 321, 362, 610, 809
AfiI CCNNNNNNNGG 4 cut(s) 131, 311, 677, 734
AflIII ACRYGT 1 cut(s) 299
AgsI TTSAA 5 cut(s) 435, 497, 572, 777, 799
AjnI CCWGG 2 cut(s) 172, 727
AjuI GAANNNNNNNTTGG 4 cut(s) 441, 473, 564, 596
AluBI AGCT 3 cut(s) 235, 576, 701
AluI AGCT 3 cut(s) 235, 576, 701
Alw21I GWGCWC 1 cut(s) 266
Alw44I GTGCAC 1 cut(s) 262
AoxI GGCC 3 cut(s) 122, 179, 532
ApaLI GTGCAC 1 cut(s) 262
ApoI RAATTY 2 cut(s) 195, 430
AspS9I GGNCC 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 266
BbsI GAAGAC 2 cut(s) 120, 490
Bbv12I GWGCWC 1 cut(s) 266
BbvCI CCTCAGC 1 cut(s) 306
BccI CCATC 2 cut(s) 13, 262
BciT130I CCWGG 2 cut(s) 174, 729
BfaI CTAG 6 cut(s) 108, 323, 393, 519, 612, 814
BfmI CTRYAG 1 cut(s) 236
BmcAI AGTACT 1 cut(s) 321
Bme1390I CCNGG 2 cut(s) 174, 729
BmgT120I GGNCC 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 2 cut(s) 174, 729
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 2 cut(s) 120, 490
Bpu10I CCTNAGC 1 cut(s) 306
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 311, 677, 734
Bse118I RCCGGY 1 cut(s) 401
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 663
BseBI CCWGG 2 cut(s) 174, 729
BseGI GGATG 2 cut(s) 24, 28
BseLI CCNNNNNNNGG 4 cut(s) 131, 311, 677, 734
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 5 cut(s) 321, 324, 537, 630, 633
BseSI GKGCMC 1 cut(s) 266
BshFI GGCC 3 cut(s) 124, 181, 534
BsiHKAI GWGCWC 1 cut(s) 266
BsiSI CCGG 2 cut(s) 402, 642
BslFI GGGAC 3 cut(s) 529, 576, 762
BslI CCNNNNNNNGG 4 cut(s) 131, 311, 677, 734
BsmFI GGGAC 3 cut(s) 529, 576, 762
BsnI GGCC 3 cut(s) 124, 181, 534
Bsp1286I GDGCHC 1 cut(s) 266
Bsp1407I TGTACA 2 cut(s) 43, 360
Bsp143I GATC 1 cut(s) 721
BspANI GGCC 3 cut(s) 124, 181, 534
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 663
BsrFI RCCGGY 1 cut(s) 401
BsrGI TGTACA 2 cut(s) 43, 360
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 401
BssMI GATC 1 cut(s) 721
Bst2UI CCWGG 2 cut(s) 174, 729
Bst6I CTCTTC 4 cut(s) 412, 523, 640, 733
BstAUI TGTACA 2 cut(s) 43, 360
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 2 cut(s) 258, 306
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 2 cut(s) 24, 28
BstKTI GATC 1 cut(s) 724
BstMBI GATC 1 cut(s) 721
BstNI CCWGG 2 cut(s) 174, 729
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 2 cut(s) 172, 727
BstSFI CTRYAG 1 cut(s) 236
BstSLI GKGCMC 1 cut(s) 266
BstV2I GAAGAC 2 cut(s) 120, 490
BsuRI GGCC 3 cut(s) 124, 181, 534
BtsCI GGATG 2 cut(s) 24, 28
Cac8I GCNNGC 1 cut(s) 349
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 180
Csp6I GTAC 5 cut(s) 44, 320, 361, 609, 808
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviAII CATG 7 cut(s) 103, 139, 209, 248, 300, 338, 488
CviQI GTAC 5 cut(s) 44, 320, 361, 609, 808
DdeI CTNAG 2 cut(s) 258, 306
DpnI GATC 1 cut(s) 723
DpnII GATC 1 cut(s) 721
DraIII CACNNNGTG 1 cut(s) 272
Eam1104I CTCTTC 4 cut(s) 412, 523, 640, 733
EarI CTCTTC 4 cut(s) 412, 523, 640, 733
Eco32I GATATC 1 cut(s) 245
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoRII CCWGG 2 cut(s) 172, 727
EcoRV GATATC 1 cut(s) 245
FaeI CATG 7 cut(s) 106, 142, 212, 251, 303, 341, 491
FaqI GGGAC 3 cut(s) 529, 576, 762
FatI CATG 7 cut(s) 102, 138, 208, 247, 299, 337, 487
FauNDI CATATG 1 cut(s) 34
FokI GGATG 2 cut(s) 31, 35
FspBI CTAG 6 cut(s) 108, 323, 393, 519, 612, 814
HaeIII GGCC 3 cut(s) 124, 181, 534
HapII CCGG 2 cut(s) 402, 642
Hin1II CATG 7 cut(s) 106, 142, 212, 251, 303, 341, 491
HindIII AAGCTT 2 cut(s) 574, 699
HinfI GANTC 3 cut(s) 28, 145, 214
HpaII CCGG 2 cut(s) 402, 642
Hpy166II GTNNAC 1 cut(s) 264
Hpy8I GTNNAC 1 cut(s) 264
HpyAV CCTTC 5 cut(s) 171, 275, 381, 443, 579
HpyCH4V TGCA 4 cut(s) 227, 264, 368, 635
HpyF3I CTNAG 2 cut(s) 258, 306
Hsp92II CATG 7 cut(s) 106, 142, 212, 251, 303, 341, 491
Kzo9I GATC 1 cut(s) 721
LmnI GCTCC 2 cut(s) 550, 673
LpnPI CCDG 9 cut(s) 117, 159, 186, 357, 415, 655, 714, 730, 741
LweI GCATC 1 cut(s) 13
MaeI CTAG 6 cut(s) 108, 323, 393, 519, 612, 814
MaeIII GTNAC 2 cut(s) 86, 588
MalI GATC 1 cut(s) 723
MboI GATC 1 cut(s) 721
MfeI CAATTG 1 cut(s) 630
MhlI GDGCHC 1 cut(s) 266
MluCI AATT 9 cut(s) 195, 430, 455, 536, 566, 630, 659, 769, 799
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 2 cut(s) 572, 695
MseI TTAA 1 cut(s) 768
MslI CAYNNNNRTG 1 cut(s) 259
MspI CCGG 2 cut(s) 402, 642
MspR9I CCNGG 2 cut(s) 174, 729
MunI CAATTG 1 cut(s) 630
MvaI CCWGG 2 cut(s) 174, 729
NdeI CATATG 1 cut(s) 34
NdeII GATC 1 cut(s) 721
NlaIII CATG 7 cut(s) 106, 142, 212, 251, 303, 341, 491
NlaIV GGNNCC 1 cut(s) 400
NmuCI GTSAC 1 cut(s) 588
NspI RCATGY 1 cut(s) 303
PciI ACATGT 1 cut(s) 299
PfeI GAWTC 2 cut(s) 145, 214
PflMI CCANNNNNTGG 1 cut(s) 734
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PscI ACATGT 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 172, 727
PspGI CCWGG 2 cut(s) 172, 727
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 1 cut(s) 180
RsaI GTAC 5 cut(s) 45, 321, 362, 610, 809
RsaNI GTAC 5 cut(s) 44, 320, 361, 609, 808
RseI CAYNNNNRTG 1 cut(s) 259
SaqAI TTAA 1 cut(s) 768
Sau3AI GATC 1 cut(s) 721
Sau96I GGNCC 1 cut(s) 180
ScaI AGTACT 1 cut(s) 321
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 2 cut(s) 174, 729
SduI GDGCHC 1 cut(s) 266
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 259
Sse9I AATT 9 cut(s) 195, 430, 455, 536, 566, 630, 659, 769, 799
SspMI CTAG 6 cut(s) 108, 323, 393, 519, 612, 814
StyD4I CCNGG 2 cut(s) 172, 727
TaqII GACCGA 1 cut(s) 90
TasI AATT 9 cut(s) 195, 430, 455, 536, 566, 630, 659, 769, 799
TatI WGTACW 3 cut(s) 43, 319, 360
TfiI GAWTC 2 cut(s) 145, 214
Tru1I TTAA 1 cut(s) 768
Tru9I TTAA 1 cut(s) 768
TseFI GTSAC 1 cut(s) 588
Tsp45I GTSAC 1 cut(s) 588
TspDTI ATGAA 4 cut(s) 82, 294, 652, 753
TspGWI ACGGA 1 cut(s) 458
Van91I CCANNNNNTGG 1 cut(s) 734
VneI GTGCAC 1 cut(s) 262
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 2 cut(s) 195, 430
XceI RCATGY 1 cut(s) 303
XspI CTAG 6 cut(s) 108, 323, 393, 519, 612, 814
ZrmI AGTACT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.