Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005190

Physical Location & Seq

Genomic Coordinates Reverse (-)

58025113 .. 58029388

Gene Structure 4276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG387800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1836 bp

ATGGAGAAGGTGAAGCTAAGGAATAATGGAGATGTTCCAAACTACTCTGATCCAGACAATTTTACTCTTGAAATTAGACATGGGGGTGTATTTTCTAGTGGAGAGTATGTGGGTGGTTCCGTATGTTGGGCAGACAACTATGACGTTAACTTATTTAGCAAGTGGGACTTGGCAATAATTGCTAGAAATCTTGGATATGATATTGAGAGAATTCAATACTTTTTCTACCATAAAACTGATGGTTTGGTAGAGATACATAGTGACATAAGGGTTGTAGAGTGTTCACTAAACCAATCCACTAGAAAAGTTTATGTTGCCTATATTAGTGATTGCATAGTTTTGGATGAAACTCTTGCATTTAATGAAGAATCACAAGTTAGTCATCATGTTCAAGCTGACAATGAAGCGGGTGCATATGGGGATGATAAAGTGGATTATGATATAGGACTTGATGTTAATGTCTTGGCAGATAATGATTTGGACGGAGATTCCAGCAATGATGAAGATGTACTAGATCCTGAAGATGCACAGTGGTTTGTGGATGAAGAATATGTTCAGAGCGATGAAGATATGAGGCAGTTCAAGAGTTGTGTTGTAGATGAAATTGAAGTTGATCATCATGTGGAACCTGGAGAGGAGTCTGATGACTGGGCTATGGACAGCGATGATCTTGAGAGCCTTAATGAGAGTTCAAGTGATGAGGAGGTTAATGAGCCTGTTAAGTACATGAAGCCTAAGAAAAAGCAACCAAAGTTCAAGCAGTATAGAAGAGATACTGACTTACGGGATCCATACTTCAAACTGGGTCTGGAGTTTCCAACTATGGCACAATGTAGGGAGGCCATAAGAGAATTGTCTATCAAATCTGGAAGGCCACTAAGTTTTGACAAAAATGATTCTGACAAGGTTATAGTGAAATGTAAAGGACAATGTAAGGGAAGTTGTCCATTCAAAATATATGCATCTATGGTTGGGAATGGTCCTACTGTGAGGGTCAAGACTTATGAGCCATTGCATCACTGCGGGAGGTCAAAAAAAATAAAGCATGCTACTTCTACTTGGATAGAAGACAGGTTTGATGAGGTCTTCAGATCCAATCCCAAAATAAAACCTAGAGACTTTATTCGAATGGTGGCTAAGCAGTACGGGATTGATGTTACACTTGATCAGTTTTATAAGGCCAAGGAAAAAGCTAAGAGGAGGATACAAGGTCATAATAAGAGGACATGTCCTCAGAGAGGACAAGCACTAGAACCTCCTCCTCATGTTCCAATGAGCAAAAATATATACAAGGCAAGTGGAACAGCAAGAGGAAGGGCTAGAGGAACCGGCACAAATAGAGGAAGAGGTATTGGAAATTCAATTATGACGGAAGAAGCACAATTTGGACAAGGAACAAGAGGACAAGGAAGACATGGTGTTCAACATGTTAGAGTTGGGGGGACTAGAGGAGGAAGAGACCAATTTGTTGCTCCAACAAGAGAAAGAGGACAGTTTGAAAGCTTTATTGGAAGGTCACAATCTACAAGTTTCGGTACTAGAGGAGGAGGACAAACATTTGCAAGTGCCGGAAGAGGAAGAAGCCAATTCATTGCTCCAACAAGAGGAAAAGGGCAACCTACAAGCTTTGGTAATGGTGGAGGACAAGCTCTCCCAGGTATTGAAAGAGGAATGGGACAATATGTCAATCGTGCCACTCGTATAACTCAAGTGACAATGCATTCTACAATGAGTACTGAAGCTACTGCATCTCAACCAATTTCTAAAGCTAGAAGTAGTGTATCAAGTACAAGGCATGTTACTCCTGCCAACAGTAACACACATTGGAAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

611

Amino Acids

68.45

Weight (kDa)

6.65

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1-like	PF26130	19 - 94	2e-08	PB1-like domain
DBD_Tnp_Mut	PF03108	267 - 324	3e-11	MuDR family transposase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13324
prunus_persica	Prupe.6G164700_v2.0.a1 Prupe.6G182100_v2.0.a1
pyrus_communis	pycom06g06460 pycom15g24790 pycom15g27610
rosa_chinensis	RchiOBHm_Chr5g0080361
rosa_laevigata	RLG00000018542 RLG00000036161 RLG00000036162
rosa_multiflora	Rmu_sc0007310.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288540 Rroxscaffold_4G00288590 Rroxscaffold_4G00323350
rosa_rugosa	Rorug01G0105500 Rorug01G0166300 Rorug02G0169100
rosa_samantha	Rh1AG080500 Rh1AG329900 Rh1BG311500 Rh1DG137800 Rh1DG343300 Rh2AG387800 Rh2CG375100 Rh3DG100300 Rh5BG152800 Rh5DG277500 Rh6AG151900
rosa_wichuraiana	Rw1G029250 Rw5G024840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1176
AciI	CCGC	2 cut(s)	407, 1023
AclWI	GGATC	5 cut(s)	44, 509, 782, 795, 1086
AcsI	RAATTY	2 cut(s)	210, 1357
AcuI	CTGAAG	3 cut(s)	540, 1072, 1758
AfaI	GTAC	6 cut(s)	510, 725, 1145, 1537, 1735, 1789
AfiI	CCNNNNNNNGG	3 cut(s)	126, 1238, 1604
AflIII	ACRYGT	2 cut(s)	1226, 1426
AhdI	GACNNNNNGTC	1 cut(s)	1682
AjnI	CCWGG	2 cut(s)	628, 1654
AjuI	GAANNNNNNNTTGG	4 cut(s)	1368, 1400, 1491, 1523
AluBI	AGCT	9 cut(s)	16, 395, 1193, 1503, 1626, 1649, 1742, 1769, 1831
AluI	AGCT	9 cut(s)	16, 395, 1193, 1503, 1626, 1649, 1742, 1769, 1831
Alw26I	GTCTC	2 cut(s)	1110, 1452
AlwI	GGATC	5 cut(s)	44, 509, 782, 795, 1086
AoxI	GGCC	3 cut(s)	840, 872, 1179
ApoI	RAATTY	2 cut(s)	210, 1357
Asp700I	GAANNNNTTC	1 cut(s)	552
AspS9I	GGNCC	1 cut(s)	980
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	1126
AvaII	GGWCC	1 cut(s)	980
BamHI	GGATCC	1 cut(s)	787
BbsI	GAAGAC	3 cut(s)	1074, 1078, 1417
BccI	CCATC	1 cut(s)	233
BciT130I	CCWGG	2 cut(s)	630, 1656
BciVI	GTATCC	1 cut(s)	1197
BclI	TGATCA	2 cut(s)	613, 1165
BcoDI	GTCTC	2 cut(s)	1110, 1452
BfmI	CTRYAG	1 cut(s)	1832
BfuI	GTATCC	1 cut(s)	1197
BlpI	GCTNAGC	1 cut(s)	1137
BmcAI	AGTACT	1 cut(s)	1735
Bme1390I	CCNGG	2 cut(s)	630, 1656
Bme18I	GGWCC	1 cut(s)	980
BmeRI	GACNNNNNGTC	1 cut(s)	1682
BmgT120I	GGNCC	1 cut(s)	980
BmiI	GGNNCC	4 cut(s)	118, 627, 789, 1327
BmrFI	CCNGG	2 cut(s)	630, 1656
BmrI	ACTGGG	2 cut(s)	658, 812
BmsI	GCATC	4 cut(s)	514, 971, 1024, 1757
BmuI	ACTGGG	2 cut(s)	658, 812
BpiI	GAAGAC	3 cut(s)	1074, 1078, 1417
BpmI	CTGGAG	2 cut(s)	651, 830
Bpu10I	CCTNAGC	1 cut(s)	17
Bpu1102I	GCTNAGC	1 cut(s)	1137
Bpu14I	TTCGAA	1 cut(s)	1126
BpuEI	CTTGAG	2 cut(s)	692, 1692
BsaI	GGTCTC	1 cut(s)	1452
BsaJI	CCNNGG	2 cut(s)	1182, 1654
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 1635, 1665
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 1238, 1604
Bse118I	RCCGGY	1 cut(s)	1328
Bse1I	ACTGG	2 cut(s)	653, 807
Bse3DI	GCAATG	3 cut(s)	502, 1010, 1590
BseBI	CCWGG	2 cut(s)	630, 1656
BseDI	CCNNGG	2 cut(s)	1182, 1654
BseGI	GGATG	3 cut(s)	349, 427, 547
BseLI	CCNNNNNNNGG	3 cut(s)	126, 1238, 1604
BseMI	GCAATG	3 cut(s)	502, 1010, 1590
BseMII	CTCAG	1 cut(s)	1247
BseNI	ACTGG	2 cut(s)	653, 807
BseRI	GAGGAG	8 cut(s)	650, 716, 1213, 1248, 1251, 1464, 1557, 1560
BshFI	GGCC	3 cut(s)	842, 874, 1181
BsiSI	CCGG	2 cut(s)	1329, 1569
BslFI	GGGAC	3 cut(s)	179, 1456, 1689
BslI	CCNNNNNNNGG	3 cut(s)	126, 1238, 1604
BsmAI	GTCTC	2 cut(s)	1110, 1452
BsmFI	GGGAC	3 cut(s)	179, 1456, 1689
BsmI	GAATGC	1 cut(s)	1720
BsnI	GGCC	3 cut(s)	842, 874, 1181
Bso31I	GGTCTC	1 cut(s)	1452
Bsp119I	TTCGAA	1 cut(s)	1126
Bsp143I	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
Bsp1720I	GCTNAGC	1 cut(s)	1137
BspACI	CCGC	2 cut(s)	407, 1023
BspANI	GGCC	3 cut(s)	842, 874, 1181
BspCNI	CTCAG	1 cut(s)	1246
BspLI	GGNNCC	4 cut(s)	118, 627, 789, 1327
BspPI	GGATC	5 cut(s)	44, 509, 782, 795, 1086
BspT104I	TTCGAA	1 cut(s)	1126
BspTNI	GGTCTC	1 cut(s)	1452
BsrDI	GCAATG	3 cut(s)	502, 1010, 1590
BsrFI	RCCGGY	1 cut(s)	1328
BsrI	ACTGG	2 cut(s)	653, 807
BssAI	RCCGGY	1 cut(s)	1328
BssECI	CCNNGG	2 cut(s)	1182, 1654
BssMI	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
BssT1I	CCWWGG	1 cut(s)	1182
Bst2UI	CCWGG	2 cut(s)	630, 1656
Bst4CI	ACNGT	4 cut(s)	531, 988, 1494, 1814
Bst6I	CTCTTC	4 cut(s)	763, 1339, 1450, 1567
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	1126
BstC8I	GCNNGC	1 cut(s)	1047
BstDEI	CTNAG	6 cut(s)	17, 735, 878, 1137, 1194, 1233
BstENI	CCTNNNNNAGG	1 cut(s)	1236
BstF5I	GGATG	3 cut(s)	349, 427, 547
BstKTI	GATC	7 cut(s)	52, 517, 616, 670, 790, 1094, 1168
BstMAI	GTCTC	2 cut(s)	1110, 1452
BstMBI	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	2 cut(s)	630, 1656
BstNSI	RCATGY	4 cut(s)	1049, 1230, 1430, 1799
BstSCI	CCNGG	2 cut(s)	628, 1654
BstSFI	CTRYAG	1 cut(s)	1832
BstV2I	GAAGAC	3 cut(s)	1074, 1078, 1417
BstX2I	RGATCY	3 cut(s)	514, 787, 1091
BstYI	RGATCY	3 cut(s)	514, 787, 1091
BsuI	GTATCC	1 cut(s)	1197
BsuRI	GGCC	3 cut(s)	842, 874, 1181
BtgZI	GCGATG	2 cut(s)	576, 678
BtsCI	GGATG	3 cut(s)	349, 427, 547
BtsI	GCAGTG	1 cut(s)	1018
BtsIMutI	CAGTG	2 cut(s)	536, 1018
Cac8I	GCNNGC	1 cut(s)	1047
Cfr10I	RCCGGY	1 cut(s)	1328
Cfr13I	GGNCC	1 cut(s)	980
Csp6I	GTAC	6 cut(s)	509, 724, 1144, 1536, 1734, 1788
CspCI	CAANNNNNGTGG	2 cut(s)	1279, 1314
CviQI	GTAC	6 cut(s)	509, 724, 1144, 1536, 1734, 1788
DdeI	CTNAG	6 cut(s)	17, 735, 878, 1137, 1194, 1233
DpnI	GATC	7 cut(s)	51, 516, 615, 669, 789, 1093, 1167
DpnII	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
DriI	GACNNNNNGTC	1 cut(s)	1682
Eam1104I	CTCTTC	4 cut(s)	763, 1339, 1450, 1567
Eam1105I	GACNNNNNGTC	1 cut(s)	1682
EarI	CTCTTC	4 cut(s)	763, 1339, 1450, 1567
Eco130I	CCWWGG	1 cut(s)	1182
Eco31I	GGTCTC	1 cut(s)	1452
Eco47I	GGWCC	1 cut(s)	980
Eco57I	CTGAAG	3 cut(s)	540, 1072, 1758
EcoNI	CCTNNNNNAGG	1 cut(s)	1236
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	628, 1654
EcoT14I	CCWWGG	1 cut(s)	1182
EcoT22I	ATGCAT	2 cut(s)	964, 1722
ErhI	CCWWGG	1 cut(s)	1182
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	3 cut(s)	179, 1456, 1689
FauI	CCCGC	2 cut(s)	400, 1016
FauNDI	CATATG	1 cut(s)	415
FbaI	TGATCA	2 cut(s)	613, 1165
FokI	GGATG	3 cut(s)	356, 434, 554
GsuI	CTGGAG	2 cut(s)	651, 830
HaeIII	GGCC	3 cut(s)	842, 874, 1181
HapII	CCGG	2 cut(s)	1329, 1569
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	2 cut(s)	1501, 1624
HinfI	GANTC	4 cut(s)	368, 488, 638, 896
HpaI	GTTAAC	1 cut(s)	148
HpaII	CCGG	2 cut(s)	1329, 1569
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	148, 284
Hpy188I	TCNGA	6 cut(s)	49, 558, 643, 901, 1091, 1236
Hpy188III	TCNNGA	8 cut(s)	53, 68, 518, 583, 671, 809, 867, 997
Hpy8I	GTNNAC	2 cut(s)	148, 284
HpyAV	CCTTC	3 cut(s)	864, 1308, 1506
HpyCH4III	ACNGT	4 cut(s)	531, 988, 1494, 1814
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	9 cut(s)	333, 356, 413, 527, 962, 1015, 1562, 1720, 1748
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	6 cut(s)	17, 735, 878, 1137, 1194, 1233
HpySE526I	ACGT	1 cut(s)	144
Ksp22I	TGATCA	2 cut(s)	613, 1165
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
LmnI	GCTCC	2 cut(s)	1477, 1600
LweI	GCATC	4 cut(s)	514, 971, 1024, 1757
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	6 cut(s)	260, 1156, 1515, 1711, 1798, 1814
MalI	GATC	7 cut(s)	51, 516, 615, 669, 789, 1093, 1167
MboI	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
MflI	RGATCY	3 cut(s)	514, 787, 1091
MlyI	GAGTC	1 cut(s)	647
MmeI	TCCRAC	3 cut(s)	842, 1499, 1622
Mph1103I	ATGCAT	2 cut(s)	964, 1722
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	6 cut(s)	147, 360, 456, 681, 708, 720
MslI	CAYNNNNRTG	1 cut(s)	84
MspI	CCGG	2 cut(s)	1329, 1569
MspR9I	CCNGG	2 cut(s)	630, 1656
Mva1269I	GAATGC	1 cut(s)	1720
MvaI	CCWGG	2 cut(s)	630, 1656
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
NlaIV	GGNNCC	4 cut(s)	118, 627, 789, 1327
NmuCI	GTSAC	3 cut(s)	260, 1515, 1711
NsiI	ATGCAT	2 cut(s)	964, 1722
NspI	RCATGY	4 cut(s)	1049, 1230, 1430, 1799
NspV	TTCGAA	1 cut(s)	1126
PaeI	GCATGC	1 cut(s)	1049
PciI	ACATGT	2 cut(s)	1226, 1426
PcsI	WCGNNNNNNNCGW	1 cut(s)	1696
PctI	GAATGC	1 cut(s)	1720
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	3 cut(s)	368, 488, 896
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
PscI	ACATGT	2 cut(s)	1226, 1426
PsiI	TTATAA	1 cut(s)	1176
Psp6I	CCWGG	2 cut(s)	628, 1654
PspGI	CCWGG	2 cut(s)	628, 1654
PspN4I	GGNNCC	4 cut(s)	118, 627, 789, 1327
PspPI	GGNCC	1 cut(s)	980
PsuI	RGATCY	3 cut(s)	514, 787, 1091
RsaI	GTAC	6 cut(s)	510, 725, 1145, 1537, 1735, 1789
RsaNI	GTAC	6 cut(s)	509, 724, 1144, 1536, 1734, 1788
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	6 cut(s)	147, 360, 456, 681, 708, 720
Sau3AI	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
Sau96I	GGNCC	1 cut(s)	980
ScaI	AGTACT	1 cut(s)	1735
SchI	GAGTC	1 cut(s)	647
ScrFI	CCNGG	2 cut(s)	630, 1656
SfaNI	GCATC	4 cut(s)	514, 971, 1024, 1757
SfcI	CTRYAG	1 cut(s)	1832
SfuI	TTCGAA	1 cut(s)	1126
SinI	GGWCC	1 cut(s)	980
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	2 cut(s)	671, 1707
SmoI	CTYRAG	2 cut(s)	671, 1707
SphI	GCATGC	1 cut(s)	1049
SsiI	CCGC	2 cut(s)	407, 1023
StyD4I	CCNGG	2 cut(s)	628, 1654
StyI	CCWWGG	1 cut(s)	1182
TaaI	ACNGT	4 cut(s)	531, 988, 1494, 1814
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	1126
TatI	WGTACW	4 cut(s)	508, 723, 1733, 1787
TfiI	GAWTC	3 cut(s)	368, 488, 896
Tru1I	TTAA	6 cut(s)	147, 360, 456, 681, 708, 720
Tru9I	TTAA	6 cut(s)	147, 360, 456, 681, 708, 720
TscAI	CASTG	2 cut(s)	536, 1025
TseFI	GTSAC	3 cut(s)	260, 1515, 1711
Tsp45I	GTSAC	3 cut(s)	260, 1515, 1711
TspDTI	ATGAA	9 cut(s)	360, 378, 417, 516, 558, 579, 615, 743, 1579
TspGWI	ACGGA	3 cut(s)	109, 498, 1385
TspRI	CASTG	2 cut(s)	536, 1025
VpaK11BI	GGWCC	1 cut(s)	980
XagI	CCTNNNNNAGG	1 cut(s)	1236
XapI	RAATTY	2 cut(s)	210, 1357
XceI	RCATGY	4 cut(s)	1049, 1230, 1430, 1799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	552
ZrmI	AGTACT	1 cut(s)	1735
Zsp2I	ATGCAT	2 cut(s)	964, 1722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.