Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005190

Physical Location & Seq

Genomic Coordinates Forward (+)

54064978 .. 54066560

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00323350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAAAACGATGATCTTGAGAGCCTTGATGAGAGTTCAAGTGATGAGGAGGTTAATGAGCCTGTTAAGTACATGAAACCTAAGAAAAAGCAACCAAAGTTCAAGCAGTATAGAAGAGATACTGACTTACAGGACCTTTGTGGGAGGCTTATGACCGAGCCTATGGTTACTTCATTTCCCCAATGGCCTAAAACTGGTGGCATGCCGATTCTTCCACCACTCTATTACAAACAACCAGGAAGGCCCAGAAAGAGAAGAATTTTAGAACCAAATGAGATTCCCAAAGGTGCAAAAAAGCTACAGAGATATCATGCCCCATCTAAGTGCACACTTTGTAAAAATGAAGGTCATAATATGAGGACATGTCCTCAGAGAGGACAAGCACTAGAACCTCCTCCTTATGTTCCAGCGAGCGAAAATATGTACAAGGCAAGTGGAACAGCAAGAGGAAGGGCTAGAGGAACCGGCTCAAATAGTGGAAGAGTTATTGGAAATTCAATTATGACGAAAGAAGGACAATTTGGACAAGGAACAAGAGGACGAGGAACACATGGTGTTCAATATGTTAAAGTTGGGGGGACTAGAGGAGGAAGAGGCCAATTTGTTGCTCCAATAAGAGAAAGAGGACAGTTTGATAGCTTTATTGGAAGGTCACAATCTACAAGTTTCGGTACTAGAGGAGGAGGACAAACAATTGCAAGTGCCGGAAGAGGAAGAAGCCAATTCATTGCTCCAACAAGAGGAAAAAGGCAACCTACAAGCTTTGGTAATGGTGGACAAGCTCTTCCAGGTATTGGAAGAGGAAGGGGACAATATGTCAATCGTGCCACTCGTATAACTCAAGTGGCAATGCATTCTACAATTAGTACTGAAGCTGCCGCGTCTCAACCAATTTCTAAAGCTAGAAGTAGTGAATCGAGTACAAGGCATGTTACTCCTGCCAACAATAACACACATTGGAAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

322

Amino Acids

35.33

Weight (kDa)

10.52

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13324
prunus_persica	Prupe.6G164700_v2.0.a1 Prupe.6G182100_v2.0.a1
pyrus_communis	pycom06g06460 pycom15g24790 pycom15g27610
rosa_chinensis	RchiOBHm_Chr5g0080361
rosa_laevigata	RLG00000018542 RLG00000036161 RLG00000036162
rosa_multiflora	Rmu_sc0007310.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288540 Rroxscaffold_4G00288590 Rroxscaffold_4G00323350
rosa_rugosa	Rorug01G0105500 Rorug01G0166300 Rorug02G0169100
rosa_samantha	Rh1AG080500 Rh1AG329900 Rh1BG311500 Rh1DG137800 Rh1DG343300 Rh2AG387800 Rh2CG375100 Rh3DG100300 Rh5BG152800 Rh5DG277500 Rh6AG151900
rosa_wichuraiana	Rw1G029250 Rw5G024840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccII	CGCG	1 cut(s)	881
AciI	CCGC	1 cut(s)	879
AcsI	RAATTY	2 cut(s)	258, 493
AcuI	CTGAAG	1 cut(s)	891
AdeI	CACNNNGTG	1 cut(s)	554
AfaI	GTAC	5 cut(s)	71, 425, 673, 868, 922
AfiI	CCNNNNNNNGG	4 cut(s)	194, 374, 740, 794
AflIII	ACRYGT	1 cut(s)	362
AgsI	TTSAA	4 cut(s)	39, 103, 498, 560
AhdI	GACNNNNNGTC	1 cut(s)	815
AjnI	CCWGG	2 cut(s)	235, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AluBI	AGCT	7 cut(s)	298, 639, 762, 782, 875, 902, 964
AluI	AGCT	7 cut(s)	298, 639, 762, 782, 875, 902, 964
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	888
Alw44I	GTGCAC	1 cut(s)	325
AoxI	GGCC	3 cut(s)	185, 242, 595
ApaLI	GTGCAC	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	875
ApoI	RAATTY	2 cut(s)	258, 493
AspS9I	GGNCC	2 cut(s)	133, 243
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	862
BccI	CCATC	1 cut(s)	325
BciT130I	CCWGG	2 cut(s)	237, 789
BcoDI	GTCTC	1 cut(s)	888
BfaI	CTAG	5 cut(s)	386, 456, 582, 675, 903
BfmI	CTRYAG	2 cut(s)	299, 965
BisI	GCNGC	2 cut(s)	876, 879
BlsI	GCNGC	2 cut(s)	877, 880
BmcAI	AGTACT	1 cut(s)	868
Bme1390I	CCNGG	2 cut(s)	237, 789
Bme18I	GGWCC	1 cut(s)	133
BmeRI	GACNNNNNGTC	1 cut(s)	815
BmgT120I	GGNCC	2 cut(s)	133, 243
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	2 cut(s)	237, 789
BpuEI	CTTGAG	2 cut(s)	38, 825
Bsc4I	CCNNNNNNNGG	4 cut(s)	194, 374, 740, 794
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	2 cut(s)	726, 855
BseBI	CCWGG	2 cut(s)	237, 789
BseLI	CCNNNNNNNGG	4 cut(s)	194, 374, 740, 794
BseMI	GCAATG	2 cut(s)	726, 855
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	5 cut(s)	62, 384, 600, 693, 696
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	862
Bsh1236I	CGCG	1 cut(s)	881
BshFI	GGCC	3 cut(s)	187, 244, 597
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	465, 705
BslFI	GGGAC	2 cut(s)	592, 822
BslI	CCNNNNNNNGG	4 cut(s)	194, 374, 740, 794
BsmAI	GTCTC	1 cut(s)	888
BsmBI	CGTCTC	1 cut(s)	888
BsmFI	GGGAC	2 cut(s)	592, 822
BsmI	GAATGC	1 cut(s)	853
BsnI	GGCC	3 cut(s)	187, 244, 597
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	879
BspANI	GGCC	3 cut(s)	187, 244, 597
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	881
BspLI	GGNNCC	1 cut(s)	463
BspQI	GCTCTTC	1 cut(s)	789
BsrDI	GCAATG	2 cut(s)	726, 855
BsrFI	RCCGGY	1 cut(s)	464
BsrGI	TGTACA	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	464
BssMI	GATC	1 cut(s)	13
Bst2UI	CCWGG	2 cut(s)	237, 789
Bst4CI	ACNGT	1 cut(s)	630
Bst6I	CTCTTC	6 cut(s)	109, 475, 586, 703, 789, 793
BstAUI	TGTACA	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	203, 412
BstDEI	CTNAG	3 cut(s)	81, 321, 369
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstFNI	CGCG	1 cut(s)	881
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	888
BstMBI	GATC	1 cut(s)	13
BstNI	CCWGG	2 cut(s)	237, 789
BstNSI	RCATGY	3 cut(s)	205, 366, 932
BstSCI	CCNGG	2 cut(s)	235, 787
BstSFI	CTRYAG	2 cut(s)	299, 965
BstSLI	GKGCMC	1 cut(s)	329
BstUI	CGCG	1 cut(s)	881
BstV1I	GCAGC	1 cut(s)	862
BsuRI	GGCC	3 cut(s)	187, 244, 597
Cac8I	GCNNGC	2 cut(s)	203, 412
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	133, 243
CseI	GACGC	1 cut(s)	870
Csp6I	GTAC	5 cut(s)	70, 424, 672, 867, 921
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	6 cut(s)	73, 202, 311, 363, 551, 929
CviQI	GTAC	5 cut(s)	70, 424, 672, 867, 921
DdeI	CTNAG	3 cut(s)	81, 321, 369
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DraIII	CACNNNGTG	1 cut(s)	554
DriI	GACNNNNNGTC	1 cut(s)	815
Eam1104I	CTCTTC	6 cut(s)	109, 475, 586, 703, 789, 793
Eam1105I	GACNNNNNGTC	1 cut(s)	815
EarI	CTCTTC	6 cut(s)	109, 475, 586, 703, 789, 793
Eco32I	GATATC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	891
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	235, 787
EcoRV	GATATC	1 cut(s)	308
EcoT22I	ATGCAT	1 cut(s)	855
Esp3I	CGTCTC	1 cut(s)	888
FaeI	CATG	6 cut(s)	76, 205, 314, 366, 554, 932
FaqI	GGGAC	2 cut(s)	592, 822
FatI	CATG	6 cut(s)	72, 201, 310, 362, 550, 928
Fnu4HI	GCNGC	2 cut(s)	876, 879
Fsp4HI	GCNGC	2 cut(s)	876, 879
FspBI	CTAG	5 cut(s)	386, 456, 582, 675, 903
GluI	GCNGC	2 cut(s)	876, 879
HaeIII	GGCC	3 cut(s)	187, 244, 597
HapII	CCGG	2 cut(s)	465, 705
HgaI	GACGC	1 cut(s)	870
Hin1II	CATG	6 cut(s)	76, 205, 314, 366, 554, 932
HindIII	AAGCTT	1 cut(s)	760
HinfI	GANTC	3 cut(s)	208, 277, 914
HpaII	CCGG	2 cut(s)	465, 705
Hpy166II	GTNNAC	2 cut(s)	327, 776
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	2 cut(s)	327, 776
HpyAV	CCTTC	6 cut(s)	234, 338, 444, 506, 642, 798
HpyCH4III	ACNGT	1 cut(s)	630
HpyCH4V	TGCA	4 cut(s)	290, 327, 698, 853
HpyF3I	CTNAG	3 cut(s)	81, 321, 369
Hsp92II	CATG	6 cut(s)	76, 205, 314, 366, 554, 932
Kzo9I	GATC	1 cut(s)	13
LguI	GCTCTTC	1 cut(s)	789
LmnI	GCTCC	2 cut(s)	613, 736
Lsp1109I	GCAGC	1 cut(s)	862
MaeI	CTAG	5 cut(s)	386, 456, 582, 675, 903
MaeIII	GTNAC	3 cut(s)	166, 651, 931
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	9 cut(s)	126, 203, 267, 492, 603, 720, 726, 776, 810
MfeI	CAATTG	1 cut(s)	693
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	9 cut(s)	258, 493, 498, 518, 599, 693, 722, 861, 891
MmeI	TCCRAC	1 cut(s)	758
Mph1103I	ATGCAT	1 cut(s)	855
MseI	TTAA	3 cut(s)	54, 66, 567
MslI	CAYNNNNRTG	1 cut(s)	322
MspI	CCGG	2 cut(s)	465, 705
MspR9I	CCNGG	2 cut(s)	237, 789
MunI	CAATTG	1 cut(s)	693
Mva1269I	GAATGC	1 cut(s)	853
MvaI	CCWGG	2 cut(s)	237, 789
MvnI	CGCG	1 cut(s)	881
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	6 cut(s)	76, 205, 314, 366, 554, 932
NlaIV	GGNNCC	1 cut(s)	463
NmuCI	GTSAC	1 cut(s)	651
NsiI	ATGCAT	1 cut(s)	855
NspI	RCATGY	3 cut(s)	205, 366, 932
PaeI	GCATGC	1 cut(s)	205
PciI	ACATGT	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	1 cut(s)	829
PctI	GAATGC	1 cut(s)	853
PfeI	GAWTC	3 cut(s)	208, 277, 914
PflMI	CCANNNNNTGG	1 cut(s)	794
PkrI	GCNGC	2 cut(s)	877, 880
PpuMI	RGGWCCY	1 cut(s)	133
PscI	ACATGT	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	133
Psp6I	CCWGG	2 cut(s)	235, 787
PspGI	CCWGG	2 cut(s)	235, 787
PspN4I	GGNNCC	1 cut(s)	463
PspPI	GGNCC	2 cut(s)	133, 243
PspPPI	RGGWCCY	1 cut(s)	133
RsaI	GTAC	5 cut(s)	71, 425, 673, 868, 922
RsaNI	GTAC	5 cut(s)	70, 424, 672, 867, 921
RseI	CAYNNNNRTG	1 cut(s)	322
SapI	GCTCTTC	1 cut(s)	789
SaqAI	TTAA	3 cut(s)	54, 66, 567
SatI	GCNGC	2 cut(s)	876, 879
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	2 cut(s)	133, 243
ScaI	AGTACT	1 cut(s)	868
ScrFI	CCNGG	2 cut(s)	237, 789
SduI	GDGCHC	1 cut(s)	329
SfcI	CTRYAG	2 cut(s)	299, 965
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	322
SmlI	CTYRAG	2 cut(s)	17, 840
SmoI	CTYRAG	2 cut(s)	17, 840
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	9 cut(s)	258, 493, 498, 518, 599, 693, 722, 861, 891
SsiI	CCGC	1 cut(s)	879
SspMI	CTAG	5 cut(s)	386, 456, 582, 675, 903
StyD4I	CCNGG	2 cut(s)	235, 787
TaaI	ACNGT	1 cut(s)	630
TaqI	TCGA	1 cut(s)	917
TaqII	GACCGA	1 cut(s)	170
TasI	AATT	9 cut(s)	258, 493, 498, 518, 599, 693, 722, 861, 891
TatI	WGTACW	4 cut(s)	69, 423, 866, 920
TauI	GCSGC	1 cut(s)	881
TfiI	GAWTC	3 cut(s)	208, 277, 914
Tru1I	TTAA	3 cut(s)	54, 66, 567
Tru9I	TTAA	3 cut(s)	54, 66, 567
TseFI	GTSAC	1 cut(s)	651
TseI	GCWGC	1 cut(s)	875
Tsp45I	GTSAC	1 cut(s)	651
TspDTI	ATGAA	4 cut(s)	89, 162, 357, 715
Van91I	CCANNNNNTGG	1 cut(s)	794
VneI	GTGCAC	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	133
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	2 cut(s)	258, 493
XceI	RCATGY	3 cut(s)	205, 366, 932
XspI	CTAG	5 cut(s)	386, 456, 582, 675, 903
ZrmI	AGTACT	1 cut(s)	868
Zsp2I	ATGCAT	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.