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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g13324 |
| prunus_persica | Prupe.6G164700_v2.0.a1 Prupe.6G182100_v2.0.a1 |
| pyrus_communis | pycom06g06460 pycom15g24790 pycom15g27610 |
| rosa_chinensis | RchiOBHm_Chr5g0080361 |
| rosa_laevigata | RLG00000018542 RLG00000036161 RLG00000036162 |
| rosa_multiflora | Rmu_sc0007310.1_g000012 |
| rosa_roxburghii | Rroxscaffold_4G00288540 Rroxscaffold_4G00288590 Rroxscaffold_4G00323350 |
| rosa_rugosa | Rorug01G0105500 Rorug01G0166300 Rorug02G0169100 |
| rosa_samantha | Rh1AG080500 Rh1AG329900 Rh1BG311500 Rh1DG137800 Rh1DG343300 Rh2AG387800 Rh2CG375100 Rh3DG100300 Rh5BG152800 Rh5DG277500 Rh6AG151900 |
| rosa_wichuraiana | Rw1G029250 Rw5G024840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 354 |
| AccI | GTMKAC | 2 cut(s) | 784, 917 |
| AccII | CGCG | 1 cut(s) | 743 |
| AciI | CCGC | 5 cut(s) | 201, 410, 631, 743, 818 |
| AclWI | GGATC | 1 cut(s) | 264 |
| AcoI | YGGCCR | 1 cut(s) | 1213 |
| AcsI | RAATTY | 2 cut(s) | 1247, 1518 |
| AcuI | CTGAAG | 2 cut(s) | 250, 507 |
| AfaI | GTAC | 5 cut(s) | 323, 414, 650, 1145, 1368 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 378, 605, 1222, 1454 |
| AflIII | ACRYGT | 1 cut(s) | 1622 |
| AjnI | CCWGG | 1 cut(s) | 1495 |
| AluBI | AGCT | 6 cut(s) | 530, 613, 621, 908, 1558, 1647 |
| AluI | AGCT | 6 cut(s) | 530, 613, 621, 908, 1558, 1647 |
| Alw21I | GWGCWC | 1 cut(s) | 1589 |
| Alw26I | GTCTC | 3 cut(s) | 288, 436, 683 |
| Alw44I | GTGCAC | 1 cut(s) | 1585 |
| AlwI | GGATC | 1 cut(s) | 264 |
| Ama87I | CYCGRG | 1 cut(s) | 451 |
| AoxI | GGCC | 8 cut(s) | 18, 50, 357, 494, 1038, 1213, 1445, 1502 |
| ApaLI | GTGCAC | 1 cut(s) | 1585 |
| ApeKI | GCWGC | 5 cut(s) | 456, 527, 610, 905, 1001 |
| ApoI | RAATTY | 2 cut(s) | 1247, 1518 |
| AseI | ATTAAT | 1 cut(s) | 720 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 542 |
| AspS9I | GGNCC | 5 cut(s) | 158, 494, 596, 1199, 1294 |
| AsuHPI | GGTGA | 1 cut(s) | 440 |
| AsuII | TTCGAA | 2 cut(s) | 304, 911 |
| AvaI | CYCGRG | 1 cut(s) | 451 |
| AvaII | GGWCC | 4 cut(s) | 158, 596, 1199, 1294 |
| AxyI | CCTNAGG | 1 cut(s) | 1629 |
| BaeGI | GKGCMC | 1 cut(s) | 1589 |
| BalI | TGGCCA | 1 cut(s) | 1215 |
| BbsI | GAAGAC | 1 cut(s) | 256 |
| Bbv12I | GWGCWC | 1 cut(s) | 1589 |
| BbvCI | CCTCAGC | 1 cut(s) | 1154 |
| BbvI | GCAGC | 5 cut(s) | 468, 539, 622, 917, 988 |
| BccI | CCATC | 5 cut(s) | 572, 674, 1153, 1336, 1585 |
| BciT130I | CCWGG | 1 cut(s) | 1497 |
| BciVI | GTATCC | 1 cut(s) | 375 |
| BclI | TGATCA | 1 cut(s) | 343 |
| BcoDI | GTCTC | 3 cut(s) | 288, 436, 683 |
| BfaI | CTAG | 2 cut(s) | 291, 1431 |
| BfmI | CTRYAG | 1 cut(s) | 1559 |
| BfuI | GTATCC | 1 cut(s) | 375 |
| BisI | GCNGC | 6 cut(s) | 457, 528, 611, 631, 906, 1002 |
| BlpI | GCTNAGC | 1 cut(s) | 315 |
| BlsI | GCNGC | 6 cut(s) | 458, 529, 612, 632, 907, 1003 |
| Bme1390I | CCNGG | 1 cut(s) | 1497 |
| Bme18I | GGWCC | 4 cut(s) | 158, 596, 1199, 1294 |
| BmeT110I | CYCGRG | 1 cut(s) | 451 |
| BmgT120I | GGNCC | 5 cut(s) | 158, 494, 596, 1199, 1294 |
| BmiI | GGNNCC | 2 cut(s) | 597, 1295 |
| BmrFI | CCNGG | 1 cut(s) | 1497 |
| BmsI | GCATC | 6 cut(s) | 149, 202, 642, 798, 964, 1336 |
| BpiI | GAAGAC | 1 cut(s) | 256 |
| BpmI | CTGGAG | 1 cut(s) | 1148 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1154 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 315 |
| Bpu14I | TTCGAA | 2 cut(s) | 304, 911 |
| BpuEI | CTTGAG | 1 cut(s) | 798 |
| BsaJI | CCNNGG | 2 cut(s) | 360, 929 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 378, 605, 1222, 1454 |
| Bse1I | ACTGG | 2 cut(s) | 989, 1459 |
| Bse21I | CCTNAGG | 1 cut(s) | 1629 |
| Bse3DI | GCAATG | 2 cut(s) | 188, 1329 |
| BseBI | CCWGG | 1 cut(s) | 1497 |
| BseDI | CCNNGG | 2 cut(s) | 360, 929 |
| BseGI | GGATG | 5 cut(s) | 578, 702, 1164, 1347, 1351 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 378, 605, 1222, 1454 |
| BseMI | GCAATG | 2 cut(s) | 188, 1329 |
| BseMII | CTCAG | 3 cut(s) | 1026, 1145, 1643 |
| BseNI | ACTGG | 2 cut(s) | 989, 1459 |
| BseRI | GAGGAG | 1 cut(s) | 391 |
| BseSI | GKGCMC | 1 cut(s) | 1589 |
| BseXI | GCAGC | 5 cut(s) | 468, 539, 622, 917, 988 |
| Bsh1236I | CGCG | 1 cut(s) | 743 |
| BshFI | GGCC | 8 cut(s) | 20, 52, 359, 496, 1040, 1215, 1447, 1504 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1589 |
| BsiHKCI | CYCGRG | 1 cut(s) | 451 |
| BslFI | GGGAC | 1 cut(s) | 1307 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 378, 605, 1222, 1454 |
| BsmAI | GTCTC | 3 cut(s) | 288, 436, 683 |
| BsmFI | GGGAC | 1 cut(s) | 1307 |
| BsmI | GAATGC | 2 cut(s) | 393, 1076 |
| BsnI | GGCC | 8 cut(s) | 20, 52, 359, 496, 1040, 1215, 1447, 1504 |
| BsoBI | CYCGRG | 1 cut(s) | 451 |
| Bsp119I | TTCGAA | 2 cut(s) | 304, 911 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1589 |
| Bsp1407I | TGTACA | 1 cut(s) | 1366 |
| Bsp143I | GATC | 2 cut(s) | 269, 343 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 315 |
| BspACI | CCGC | 5 cut(s) | 201, 410, 631, 743, 818 |
| BspANI | GGCC | 8 cut(s) | 20, 52, 359, 496, 1040, 1215, 1447, 1504 |
| BspCNI | CTCAG | 3 cut(s) | 1027, 1146, 1642 |
| BspFNI | CGCG | 1 cut(s) | 743 |
| BspHI | TCATGA | 1 cut(s) | 979 |
| BspLI | GGNNCC | 2 cut(s) | 597, 1295 |
| BspPI | GGATC | 1 cut(s) | 264 |
| BspT104I | TTCGAA | 2 cut(s) | 304, 911 |
| BsrDI | GCAATG | 2 cut(s) | 188, 1329 |
| BsrGI | TGTACA | 1 cut(s) | 1366 |
| BsrI | ACTGG | 2 cut(s) | 989, 1459 |
| BssECI | CCNNGG | 2 cut(s) | 360, 929 |
| BssMI | GATC | 2 cut(s) | 269, 343 |
| BssT1I | CCWWGG | 2 cut(s) | 360, 929 |
| Bst2UI | CCWGG | 1 cut(s) | 1497 |
| Bst4CI | ACNGT | 3 cut(s) | 166, 463, 925 |
| Bst6I | CTCTTC | 1 cut(s) | 795 |
| BstAUI | TGTACA | 1 cut(s) | 1366 |
| BstBI | TTCGAA | 2 cut(s) | 304, 911 |
| BstC8I | GCNNGC | 2 cut(s) | 225, 1463 |
| BstDEI | CTNAG | 8 cut(s) | 56, 315, 416, 617, 1035, 1154, 1581, 1629 |
| BstF5I | GGATG | 5 cut(s) | 578, 702, 1164, 1347, 1351 |
| BstFNI | CGCG | 1 cut(s) | 743 |
| BstKTI | GATC | 2 cut(s) | 272, 346 |
| BstMAI | GTCTC | 3 cut(s) | 288, 436, 683 |
| BstMBI | GATC | 2 cut(s) | 269, 343 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 627 |
| BstNI | CCWGG | 1 cut(s) | 1497 |
| BstNSI | RCATGY | 3 cut(s) | 227, 1465, 1626 |
| BstSCI | CCNGG | 1 cut(s) | 1495 |
| BstSFI | CTRYAG | 1 cut(s) | 1559 |
| BstSLI | GKGCMC | 1 cut(s) | 1589 |
| BstUI | CGCG | 1 cut(s) | 743 |
| BstV1I | GCAGC | 5 cut(s) | 468, 539, 622, 917, 988 |
| BstV2I | GAAGAC | 1 cut(s) | 256 |
| BstX2I | RGATCY | 1 cut(s) | 269 |
| BstYI | RGATCY | 1 cut(s) | 269 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1629 |
| BsuI | GTATCC | 1 cut(s) | 375 |
| BsuRI | GGCC | 8 cut(s) | 20, 52, 359, 496, 1040, 1215, 1447, 1504 |
| BtsCI | GGATG | 5 cut(s) | 578, 702, 1164, 1347, 1351 |
| BtsI | GCAGTG | 1 cut(s) | 196 |
| BtsIMutI | CAGTG | 2 cut(s) | 196, 459 |
| Cac8I | GCNNGC | 2 cut(s) | 225, 1463 |
| CciI | TCATGA | 1 cut(s) | 979 |
| Cfr13I | GGNCC | 5 cut(s) | 158, 494, 596, 1199, 1294 |
| Csp6I | GTAC | 5 cut(s) | 322, 413, 649, 1144, 1367 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 881, 916, 1424, 1459 |
| CviAII | CATG | 9 cut(s) | 224, 980, 1238, 1281, 1311, 1319, 1462, 1571, 1623 |
| CviQI | GTAC | 5 cut(s) | 322, 413, 649, 1144, 1367 |
| DdeI | CTNAG | 8 cut(s) | 56, 315, 416, 617, 1035, 1154, 1581, 1629 |
| DpnI | GATC | 2 cut(s) | 271, 345 |
| DpnII | GATC | 2 cut(s) | 269, 343 |
| DraI | TTTAAA | 3 cut(s) | 738, 859, 1030 |
| EaeI | YGGCCR | 1 cut(s) | 1213 |
| Eam1104I | CTCTTC | 1 cut(s) | 795 |
| EarI | CTCTTC | 1 cut(s) | 795 |
| Eco130I | CCWWGG | 2 cut(s) | 360, 929 |
| Eco147I | AGGCCT | 1 cut(s) | 1504 |
| Eco32I | GATATC | 1 cut(s) | 1568 |
| Eco47I | GGWCC | 4 cut(s) | 158, 596, 1199, 1294 |
| Eco57I | CTGAAG | 2 cut(s) | 250, 507 |
| Eco81I | CCTNAGG | 1 cut(s) | 1629 |
| Eco88I | CYCGRG | 1 cut(s) | 451 |
| EcoO109I | RGGNCCY | 2 cut(s) | 494, 1294 |
| EcoRII | CCWGG | 1 cut(s) | 1495 |
| EcoRV | GATATC | 1 cut(s) | 1568 |
| EcoT14I | CCWWGG | 2 cut(s) | 360, 929 |
| EcoT22I | ATGCAT | 1 cut(s) | 142 |
| ErhI | CCWWGG | 2 cut(s) | 360, 929 |
| FaeI | CATG | 9 cut(s) | 227, 983, 1241, 1284, 1314, 1322, 1465, 1574, 1626 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 597, 629, 771, 803 |
| FaqI | GGGAC | 1 cut(s) | 1307 |
| FatI | CATG | 9 cut(s) | 223, 979, 1237, 1280, 1310, 1318, 1461, 1570, 1622 |
| FauI | CCCGC | 1 cut(s) | 194 |
| FauNDI | CATATG | 1 cut(s) | 1357 |
| FbaI | TGATCA | 1 cut(s) | 343 |
| FblI | GTMKAC | 2 cut(s) | 784, 917 |
| Fnu4HI | GCNGC | 6 cut(s) | 457, 528, 611, 631, 906, 1002 |
| FokI | GGATG | 5 cut(s) | 585, 709, 1171, 1354, 1358 |
| Fsp4HI | GCNGC | 6 cut(s) | 457, 528, 611, 631, 906, 1002 |
| FspBI | CTAG | 2 cut(s) | 291, 1431 |
| GluI | GCNGC | 6 cut(s) | 457, 528, 611, 631, 906, 1002 |
| GsuI | CTGGAG | 1 cut(s) | 1148 |
| HaeIII | GGCC | 8 cut(s) | 20, 52, 359, 496, 1040, 1215, 1447, 1504 |
| Hin1II | CATG | 9 cut(s) | 227, 983, 1241, 1284, 1314, 1322, 1465, 1574, 1626 |
| HindIII | AAGCTT | 1 cut(s) | 1645 |
| HinfI | GANTC | 4 cut(s) | 74, 1351, 1468, 1537 |
| HphI | GGTGA | 1 cut(s) | 440 |
| Hpy166II | GTNNAC | 3 cut(s) | 785, 918, 1587 |
| Hpy188I | TCNGA | 2 cut(s) | 79, 269 |
| Hpy188III | TCNNGA | 5 cut(s) | 45, 175, 398, 707, 980 |
| Hpy8I | GTNNAC | 3 cut(s) | 785, 918, 1587 |
| HpyAV | CCTTC | 7 cut(s) | 42, 485, 532, 545, 1285, 1494, 1598 |
| HpyCH4III | ACNGT | 3 cut(s) | 166, 463, 925 |
| HpyCH4V | TGCA | 8 cut(s) | 140, 193, 527, 884, 1004, 1322, 1550, 1587 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 627 |
| HpyF3I | CTNAG | 8 cut(s) | 56, 315, 416, 617, 1035, 1154, 1581, 1629 |
| Hsp92II | CATG | 9 cut(s) | 227, 983, 1241, 1284, 1314, 1322, 1465, 1574, 1626 |
| Ksp22I | TGATCA | 1 cut(s) | 343 |
| Kzo9I | GATC | 2 cut(s) | 269, 343 |
| LmnI | GCTCC | 1 cut(s) | 400 |
| Lsp1109I | GCAGC | 5 cut(s) | 468, 539, 622, 917, 988 |
| LweI | GCATC | 6 cut(s) | 149, 202, 642, 798, 964, 1336 |
| MaeI | CTAG | 2 cut(s) | 291, 1431 |
| MaeIII | GTNAC | 5 cut(s) | 584, 767, 869, 1225, 1409 |
| MalI | GATC | 2 cut(s) | 271, 345 |
| MboI | GATC | 2 cut(s) | 269, 343 |
| MflI | RGATCY | 1 cut(s) | 269 |
| MhlI | GDGCHC | 1 cut(s) | 1589 |
| MlsI | TGGCCA | 1 cut(s) | 1215 |
| MluCI | AATT | 9 cut(s) | 29, 434, 468, 853, 1005, 1081, 1180, 1247, 1518 |
| MluNI | TGGCCA | 1 cut(s) | 1215 |
| MlyI | GAGTC | 1 cut(s) | 1360 |
| MmeI | TCCRAC | 2 cut(s) | 1177, 1319 |
| Mox20I | TGGCCA | 1 cut(s) | 1215 |
| Mph1103I | ATGCAT | 1 cut(s) | 142 |
| MroXI | GAANNNNTTC | 1 cut(s) | 542 |
| MscI | TGGCCA | 1 cut(s) | 1215 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1236, 1582 |
| Msp20I | TGGCCA | 1 cut(s) | 1215 |
| MspR9I | CCNGG | 1 cut(s) | 1497 |
| Mva1269I | GAATGC | 2 cut(s) | 393, 1076 |
| MvaI | CCWGG | 1 cut(s) | 1497 |
| MvnI | CGCG | 1 cut(s) | 743 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 627 |
| NdeI | CATATG | 1 cut(s) | 1357 |
| NdeII | GATC | 2 cut(s) | 269, 343 |
| NlaIII | CATG | 9 cut(s) | 227, 983, 1241, 1284, 1314, 1322, 1465, 1574, 1626 |
| NlaIV | GGNNCC | 2 cut(s) | 597, 1295 |
| NmuCI | GTSAC | 4 cut(s) | 584, 767, 869, 1225 |
| NsiI | ATGCAT | 1 cut(s) | 142 |
| NspI | RCATGY | 3 cut(s) | 227, 1465, 1626 |
| NspV | TTCGAA | 2 cut(s) | 304, 911 |
| PaeI | GCATGC | 2 cut(s) | 227, 1465 |
| PagI | TCATGA | 1 cut(s) | 979 |
| PceI | AGGCCT | 1 cut(s) | 1504 |
| PciI | ACATGT | 1 cut(s) | 1622 |
| PctI | GAATGC | 2 cut(s) | 393, 1076 |
| PdmI | GAANNNNTTC | 1 cut(s) | 542 |
| PfeI | GAWTC | 3 cut(s) | 74, 1468, 1537 |
| PkrI | GCNGC | 6 cut(s) | 458, 529, 612, 632, 907, 1003 |
| PleI | GAGTC | 1 cut(s) | 1359 |
| PpsI | GAGTC | 1 cut(s) | 1359 |
| PpuMI | RGGWCCY | 1 cut(s) | 1294 |
| PscI | ACATGT | 1 cut(s) | 1622 |
| PshBI | ATTAAT | 1 cut(s) | 720 |
| PsiI | TTATAA | 1 cut(s) | 354 |
| Psp5II | RGGWCCY | 1 cut(s) | 1294 |
| Psp6I | CCWGG | 1 cut(s) | 1495 |
| PspGI | CCWGG | 1 cut(s) | 1495 |
| PspN4I | GGNNCC | 2 cut(s) | 597, 1295 |
| PspPI | GGNCC | 5 cut(s) | 158, 494, 596, 1199, 1294 |
| PspPPI | RGGWCCY | 1 cut(s) | 1294 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1297, 1329 |
| PsuI | RGATCY | 1 cut(s) | 269 |
| RsaI | GTAC | 5 cut(s) | 323, 414, 650, 1145, 1368 |
| RsaNI | GTAC | 5 cut(s) | 322, 413, 649, 1144, 1367 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1236, 1582 |
| SatI | GCNGC | 6 cut(s) | 457, 528, 611, 631, 906, 1002 |
| Sau3AI | GATC | 2 cut(s) | 269, 343 |
| Sau96I | GGNCC | 5 cut(s) | 158, 494, 596, 1199, 1294 |
| SchI | GAGTC | 1 cut(s) | 1360 |
| ScrFI | CCNGG | 1 cut(s) | 1497 |
| SduI | GDGCHC | 1 cut(s) | 1589 |
| SfaNI | GCATC | 6 cut(s) | 149, 202, 642, 798, 964, 1336 |
| SfcI | CTRYAG | 1 cut(s) | 1559 |
| SfuI | TTCGAA | 2 cut(s) | 304, 911 |
| SinI | GGWCC | 4 cut(s) | 158, 596, 1199, 1294 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1236, 1582 |
| SmlI | CTYRAG | 1 cut(s) | 813 |
| SmoI | CTYRAG | 1 cut(s) | 813 |
| SphI | GCATGC | 2 cut(s) | 227, 1465 |
| Sse9I | AATT | 9 cut(s) | 29, 434, 468, 853, 1005, 1081, 1180, 1247, 1518 |
| SseBI | AGGCCT | 1 cut(s) | 1504 |
| SsiI | CCGC | 5 cut(s) | 201, 410, 631, 743, 818 |
| SspI | AATATT | 1 cut(s) | 1209 |
| SspMI | CTAG | 2 cut(s) | 291, 1431 |
| StuI | AGGCCT | 1 cut(s) | 1504 |
| StyD4I | CCNGG | 1 cut(s) | 1495 |
| StyI | CCWWGG | 2 cut(s) | 360, 929 |
| TaaI | ACNGT | 3 cut(s) | 166, 463, 925 |
| TaqI | TCGA | 3 cut(s) | 304, 911, 1221 |
| TaqII | GACCGA | 1 cut(s) | 1413 |
| TasI | AATT | 9 cut(s) | 29, 434, 468, 853, 1005, 1081, 1180, 1247, 1518 |
| TatI | WGTACW | 2 cut(s) | 1143, 1366 |
| TauI | GCSGC | 1 cut(s) | 633 |
| TfiI | GAWTC | 3 cut(s) | 74, 1468, 1537 |
| TscAI | CASTG | 2 cut(s) | 203, 466 |
| TseFI | GTSAC | 4 cut(s) | 584, 767, 869, 1225 |
| TseI | GCWGC | 5 cut(s) | 456, 527, 610, 905, 1001 |
| Tsp45I | GTSAC | 4 cut(s) | 584, 767, 869, 1225 |
| TspDTI | ATGAA | 6 cut(s) | 535, 998, 1226, 1405, 1617, 1640 |
| TspRI | CASTG | 2 cut(s) | 203, 466 |
| VneI | GTGCAC | 1 cut(s) | 1585 |
| VpaK11BI | GGWCC | 4 cut(s) | 158, 596, 1199, 1294 |
| VspI | ATTAAT | 1 cut(s) | 720 |
| XapI | RAATTY | 2 cut(s) | 1247, 1518 |
| XceI | RCATGY | 3 cut(s) | 227, 1465, 1626 |
| XmiI | GTMKAC | 2 cut(s) | 784, 917 |
| XmnI | GAANNNNTTC | 1 cut(s) | 542 |
| XspI | CTAG | 2 cut(s) | 291, 1431 |
| Zsp2I | ATGCAT | 1 cut(s) | 142 |