Rw5G024840

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
35225426 .. 35228839
3414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G024840.1

Sequence Viewer

Length: 1659 bp
ATGGCACAATGTAGGGAGGCCATAAGAGAATTGTCTATCAAATCTGGAAGGCCACTAAGTTTTGACGAAAATGATTCTGACAAGGTTATATTGAAATGTAAAGGACAATGTAAGGGAAGTTGTCCATTCAAAATATATGCATCTATGGTTGGGAATGGTCCTACTGTGAGGGTCAAGACTTATGAGCCATTGCATCACTGCGGGAGGTCAAAAAAAATAAAGCATGCTACTTCTACTTGGATAGCAGACAGGTTTGATGAGGTCTTCAGATCCAATCCCAAAATAAAACCTAGAGACTTTATTCGAATGGTGGCTAAGCAGTACGGGATTGATATTACACTTGATCAGTTTTATAAGGCCAAGGAAAAAGCCAAGAGGAGGATACAAGGTGGCATTCAGGAGCAATATGCGGTACTAAGAGATTATGGTGAAGAATTAAAGAGACTTAACCCGAGCAGCACTGTTAAAATTAAAACTGAAATGACTGAAGAAGGGCCTGTATTTAAGAGAATATATATTTGTTATGCAGCTCTAAAGAAGGGTTTCATTGAAGGTTGTAGAAAAGTAGTAGGATGTGATGGGTGTCACATTAAGGGTCCATACAAAGGGCAGCTTCTAAGCTATTTTAGCCGCATCAATAATGGTATGTACCCGATAGCATTTGCCATCGTTGAAGTTGAAAATAGAGAGACTTGGATGTGGTTTCTGGAATACTTTATTAATGATGTGGAGATTTTAAACGCGGAAAATGGTTGGGTATTTATTAGTGACAAGCAAAAAGGTCTACTTGATACTATTGAAGAGTTGATGCCTCAAGCGGAACATAGGCATTGTGTTAGACACCTCTACAATAATTTTAAAGGTGCTGGTCACACAGAACTTGCATTGAAGCAAGGTATGTGGGCAGCTTCGAAGTCTACTACTGTTCCTTGGTTTGAAGAAGAAATGGACAAGGTATTAAGGCTGTGTAAAGATGCTCATGACTGGTTAAGAAAAAGGGCTGCAATTCATTGGAGTAGGTCGCATTTTAAAACTGAGGCCAAATGTGATATACTCCTTAACAATCTTTGTGAAGCATTCAATTCTGCCATATTGGAAGCAAGAGATAAACCTATCCTAACAATGCTGGAGAGGTTGAGAATGTACTTAATGCTGAGGATGGCAAAGCAAAGGGAGTTGAATTGGACACAACCTGTTGGACCAAGAATATTTGGCCATTTCGAGGTCACTCATCTTCATGGAAGAAAATTTTATGTTAATATGGAGGATAGAACCTTCTCATGTAGAAAGTGGGACCTTTGTGGTATTCCATGTTCTCATGCAATGACTTGTCTTGGTTGGATGGATGCGAGTCCATATGATTTTGTACATAACCATTACAAGAGGGAGGCTTATGACCGAGCCTATGGTTACTTCATTTCCCCAATGTCTAGTCAAAACTTGTGGCCTAAAACTGGTGGCATGCCGATTCTTCCACCACTCTATCACAAACAACCAGGAAGGCCTAAAAAGAGAAGAATTTTAGAACCAAATGAGATTCCCAAAGGTGCAAAAAAGCTACAGAGATATCATGCCCCATCTAAGTGCACACTCTGTAAAAATGAAGGTCATAATAAGAGGACATGTCCTCAGGTATGTATTTTAAGCTTTCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

552

Amino Acids

64.21

Weight (kDa)

9.38

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 2 - 50 4.4e-06 MuDR family transposase
MULE PF10551 189 - 285 1.1e-13 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AccI GTMKAC 2 cut(s) 784, 917
AccII CGCG 1 cut(s) 743
AciI CCGC 5 cut(s) 201, 410, 631, 743, 818
AclWI GGATC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 1213
AcsI RAATTY 2 cut(s) 1247, 1518
AcuI CTGAAG 2 cut(s) 250, 507
AfaI GTAC 5 cut(s) 323, 414, 650, 1145, 1368
AfiI CCNNNNNNNGG 4 cut(s) 378, 605, 1222, 1454
AflIII ACRYGT 1 cut(s) 1622
AjnI CCWGG 1 cut(s) 1495
AluBI AGCT 6 cut(s) 530, 613, 621, 908, 1558, 1647
AluI AGCT 6 cut(s) 530, 613, 621, 908, 1558, 1647
Alw21I GWGCWC 1 cut(s) 1589
Alw26I GTCTC 3 cut(s) 288, 436, 683
Alw44I GTGCAC 1 cut(s) 1585
AlwI GGATC 1 cut(s) 264
Ama87I CYCGRG 1 cut(s) 451
AoxI GGCC 8 cut(s) 18, 50, 357, 494, 1038, 1213, 1445, 1502
ApaLI GTGCAC 1 cut(s) 1585
ApeKI GCWGC 5 cut(s) 456, 527, 610, 905, 1001
ApoI RAATTY 2 cut(s) 1247, 1518
AseI ATTAAT 1 cut(s) 720
Asp700I GAANNNNTTC 1 cut(s) 542
AspS9I GGNCC 5 cut(s) 158, 494, 596, 1199, 1294
AsuHPI GGTGA 1 cut(s) 440
AsuII TTCGAA 2 cut(s) 304, 911
AvaI CYCGRG 1 cut(s) 451
AvaII GGWCC 4 cut(s) 158, 596, 1199, 1294
AxyI CCTNAGG 1 cut(s) 1629
BaeGI GKGCMC 1 cut(s) 1589
BalI TGGCCA 1 cut(s) 1215
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 1589
BbvCI CCTCAGC 1 cut(s) 1154
BbvI GCAGC 5 cut(s) 468, 539, 622, 917, 988
BccI CCATC 5 cut(s) 572, 674, 1153, 1336, 1585
BciT130I CCWGG 1 cut(s) 1497
BciVI GTATCC 1 cut(s) 375
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 3 cut(s) 288, 436, 683
BfaI CTAG 2 cut(s) 291, 1431
BfmI CTRYAG 1 cut(s) 1559
BfuI GTATCC 1 cut(s) 375
BisI GCNGC 6 cut(s) 457, 528, 611, 631, 906, 1002
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 6 cut(s) 458, 529, 612, 632, 907, 1003
Bme1390I CCNGG 1 cut(s) 1497
Bme18I GGWCC 4 cut(s) 158, 596, 1199, 1294
BmeT110I CYCGRG 1 cut(s) 451
BmgT120I GGNCC 5 cut(s) 158, 494, 596, 1199, 1294
BmiI GGNNCC 2 cut(s) 597, 1295
BmrFI CCNGG 1 cut(s) 1497
BmsI GCATC 6 cut(s) 149, 202, 642, 798, 964, 1336
BpiI GAAGAC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 1148
Bpu10I CCTNAGC 1 cut(s) 1154
Bpu1102I GCTNAGC 1 cut(s) 315
Bpu14I TTCGAA 2 cut(s) 304, 911
BpuEI CTTGAG 1 cut(s) 798
BsaJI CCNNGG 2 cut(s) 360, 929
Bsc4I CCNNNNNNNGG 4 cut(s) 378, 605, 1222, 1454
Bse1I ACTGG 2 cut(s) 989, 1459
Bse21I CCTNAGG 1 cut(s) 1629
Bse3DI GCAATG 2 cut(s) 188, 1329
BseBI CCWGG 1 cut(s) 1497
BseDI CCNNGG 2 cut(s) 360, 929
BseGI GGATG 5 cut(s) 578, 702, 1164, 1347, 1351
BseLI CCNNNNNNNGG 4 cut(s) 378, 605, 1222, 1454
BseMI GCAATG 2 cut(s) 188, 1329
BseMII CTCAG 3 cut(s) 1026, 1145, 1643
BseNI ACTGG 2 cut(s) 989, 1459
BseRI GAGGAG 1 cut(s) 391
BseSI GKGCMC 1 cut(s) 1589
BseXI GCAGC 5 cut(s) 468, 539, 622, 917, 988
Bsh1236I CGCG 1 cut(s) 743
BshFI GGCC 8 cut(s) 20, 52, 359, 496, 1040, 1215, 1447, 1504
BsiHKAI GWGCWC 1 cut(s) 1589
BsiHKCI CYCGRG 1 cut(s) 451
BslFI GGGAC 1 cut(s) 1307
BslI CCNNNNNNNGG 4 cut(s) 378, 605, 1222, 1454
BsmAI GTCTC 3 cut(s) 288, 436, 683
BsmFI GGGAC 1 cut(s) 1307
BsmI GAATGC 2 cut(s) 393, 1076
BsnI GGCC 8 cut(s) 20, 52, 359, 496, 1040, 1215, 1447, 1504
BsoBI CYCGRG 1 cut(s) 451
Bsp119I TTCGAA 2 cut(s) 304, 911
Bsp1286I GDGCHC 1 cut(s) 1589
Bsp1407I TGTACA 1 cut(s) 1366
Bsp143I GATC 2 cut(s) 269, 343
Bsp1720I GCTNAGC 1 cut(s) 315
BspACI CCGC 5 cut(s) 201, 410, 631, 743, 818
BspANI GGCC 8 cut(s) 20, 52, 359, 496, 1040, 1215, 1447, 1504
BspCNI CTCAG 3 cut(s) 1027, 1146, 1642
BspFNI CGCG 1 cut(s) 743
BspHI TCATGA 1 cut(s) 979
BspLI GGNNCC 2 cut(s) 597, 1295
BspPI GGATC 1 cut(s) 264
BspT104I TTCGAA 2 cut(s) 304, 911
BsrDI GCAATG 2 cut(s) 188, 1329
BsrGI TGTACA 1 cut(s) 1366
BsrI ACTGG 2 cut(s) 989, 1459
BssECI CCNNGG 2 cut(s) 360, 929
BssMI GATC 2 cut(s) 269, 343
BssT1I CCWWGG 2 cut(s) 360, 929
Bst2UI CCWGG 1 cut(s) 1497
Bst4CI ACNGT 3 cut(s) 166, 463, 925
Bst6I CTCTTC 1 cut(s) 795
BstAUI TGTACA 1 cut(s) 1366
BstBI TTCGAA 2 cut(s) 304, 911
BstC8I GCNNGC 2 cut(s) 225, 1463
BstDEI CTNAG 8 cut(s) 56, 315, 416, 617, 1035, 1154, 1581, 1629
BstF5I GGATG 5 cut(s) 578, 702, 1164, 1347, 1351
BstFNI CGCG 1 cut(s) 743
BstKTI GATC 2 cut(s) 272, 346
BstMAI GTCTC 3 cut(s) 288, 436, 683
BstMBI GATC 2 cut(s) 269, 343
BstMWI GCNNNNNNNGC 1 cut(s) 627
BstNI CCWGG 1 cut(s) 1497
BstNSI RCATGY 3 cut(s) 227, 1465, 1626
BstSCI CCNGG 1 cut(s) 1495
BstSFI CTRYAG 1 cut(s) 1559
BstSLI GKGCMC 1 cut(s) 1589
BstUI CGCG 1 cut(s) 743
BstV1I GCAGC 5 cut(s) 468, 539, 622, 917, 988
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
Bsu36I CCTNAGG 1 cut(s) 1629
BsuI GTATCC 1 cut(s) 375
BsuRI GGCC 8 cut(s) 20, 52, 359, 496, 1040, 1215, 1447, 1504
BtsCI GGATG 5 cut(s) 578, 702, 1164, 1347, 1351
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 196, 459
Cac8I GCNNGC 2 cut(s) 225, 1463
CciI TCATGA 1 cut(s) 979
Cfr13I GGNCC 5 cut(s) 158, 494, 596, 1199, 1294
Csp6I GTAC 5 cut(s) 322, 413, 649, 1144, 1367
CspCI CAANNNNNGTGG 4 cut(s) 881, 916, 1424, 1459
CviAII CATG 9 cut(s) 224, 980, 1238, 1281, 1311, 1319, 1462, 1571, 1623
CviQI GTAC 5 cut(s) 322, 413, 649, 1144, 1367
DdeI CTNAG 8 cut(s) 56, 315, 416, 617, 1035, 1154, 1581, 1629
DpnI GATC 2 cut(s) 271, 345
DpnII GATC 2 cut(s) 269, 343
DraI TTTAAA 3 cut(s) 738, 859, 1030
EaeI YGGCCR 1 cut(s) 1213
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
Eco130I CCWWGG 2 cut(s) 360, 929
Eco147I AGGCCT 1 cut(s) 1504
Eco32I GATATC 1 cut(s) 1568
Eco47I GGWCC 4 cut(s) 158, 596, 1199, 1294
Eco57I CTGAAG 2 cut(s) 250, 507
Eco81I CCTNAGG 1 cut(s) 1629
Eco88I CYCGRG 1 cut(s) 451
EcoO109I RGGNCCY 2 cut(s) 494, 1294
EcoRII CCWGG 1 cut(s) 1495
EcoRV GATATC 1 cut(s) 1568
EcoT14I CCWWGG 2 cut(s) 360, 929
EcoT22I ATGCAT 1 cut(s) 142
ErhI CCWWGG 2 cut(s) 360, 929
FaeI CATG 9 cut(s) 227, 983, 1241, 1284, 1314, 1322, 1465, 1574, 1626
FalI AAGNNNNNCTT 4 cut(s) 597, 629, 771, 803
FaqI GGGAC 1 cut(s) 1307
FatI CATG 9 cut(s) 223, 979, 1237, 1280, 1310, 1318, 1461, 1570, 1622
FauI CCCGC 1 cut(s) 194
FauNDI CATATG 1 cut(s) 1357
FbaI TGATCA 1 cut(s) 343
FblI GTMKAC 2 cut(s) 784, 917
Fnu4HI GCNGC 6 cut(s) 457, 528, 611, 631, 906, 1002
FokI GGATG 5 cut(s) 585, 709, 1171, 1354, 1358
Fsp4HI GCNGC 6 cut(s) 457, 528, 611, 631, 906, 1002
FspBI CTAG 2 cut(s) 291, 1431
GluI GCNGC 6 cut(s) 457, 528, 611, 631, 906, 1002
GsuI CTGGAG 1 cut(s) 1148
HaeIII GGCC 8 cut(s) 20, 52, 359, 496, 1040, 1215, 1447, 1504
Hin1II CATG 9 cut(s) 227, 983, 1241, 1284, 1314, 1322, 1465, 1574, 1626
HindIII AAGCTT 1 cut(s) 1645
HinfI GANTC 4 cut(s) 74, 1351, 1468, 1537
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 3 cut(s) 785, 918, 1587
Hpy188I TCNGA 2 cut(s) 79, 269
Hpy188III TCNNGA 5 cut(s) 45, 175, 398, 707, 980
Hpy8I GTNNAC 3 cut(s) 785, 918, 1587
HpyAV CCTTC 7 cut(s) 42, 485, 532, 545, 1285, 1494, 1598
HpyCH4III ACNGT 3 cut(s) 166, 463, 925
HpyCH4V TGCA 8 cut(s) 140, 193, 527, 884, 1004, 1322, 1550, 1587
HpyF10VI GCNNNNNNNGC 1 cut(s) 627
HpyF3I CTNAG 8 cut(s) 56, 315, 416, 617, 1035, 1154, 1581, 1629
Hsp92II CATG 9 cut(s) 227, 983, 1241, 1284, 1314, 1322, 1465, 1574, 1626
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 2 cut(s) 269, 343
LmnI GCTCC 1 cut(s) 400
Lsp1109I GCAGC 5 cut(s) 468, 539, 622, 917, 988
LweI GCATC 6 cut(s) 149, 202, 642, 798, 964, 1336
MaeI CTAG 2 cut(s) 291, 1431
MaeIII GTNAC 5 cut(s) 584, 767, 869, 1225, 1409
MalI GATC 2 cut(s) 271, 345
MboI GATC 2 cut(s) 269, 343
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 1589
MlsI TGGCCA 1 cut(s) 1215
MluCI AATT 9 cut(s) 29, 434, 468, 853, 1005, 1081, 1180, 1247, 1518
MluNI TGGCCA 1 cut(s) 1215
MlyI GAGTC 1 cut(s) 1360
MmeI TCCRAC 2 cut(s) 1177, 1319
Mox20I TGGCCA 1 cut(s) 1215
Mph1103I ATGCAT 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 542
MscI TGGCCA 1 cut(s) 1215
MslI CAYNNNNRTG 2 cut(s) 1236, 1582
Msp20I TGGCCA 1 cut(s) 1215
MspR9I CCNGG 1 cut(s) 1497
Mva1269I GAATGC 2 cut(s) 393, 1076
MvaI CCWGG 1 cut(s) 1497
MvnI CGCG 1 cut(s) 743
MwoI GCNNNNNNNGC 1 cut(s) 627
NdeI CATATG 1 cut(s) 1357
NdeII GATC 2 cut(s) 269, 343
NlaIII CATG 9 cut(s) 227, 983, 1241, 1284, 1314, 1322, 1465, 1574, 1626
NlaIV GGNNCC 2 cut(s) 597, 1295
NmuCI GTSAC 4 cut(s) 584, 767, 869, 1225
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 3 cut(s) 227, 1465, 1626
NspV TTCGAA 2 cut(s) 304, 911
PaeI GCATGC 2 cut(s) 227, 1465
PagI TCATGA 1 cut(s) 979
PceI AGGCCT 1 cut(s) 1504
PciI ACATGT 1 cut(s) 1622
PctI GAATGC 2 cut(s) 393, 1076
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 3 cut(s) 74, 1468, 1537
PkrI GCNGC 6 cut(s) 458, 529, 612, 632, 907, 1003
PleI GAGTC 1 cut(s) 1359
PpsI GAGTC 1 cut(s) 1359
PpuMI RGGWCCY 1 cut(s) 1294
PscI ACATGT 1 cut(s) 1622
PshBI ATTAAT 1 cut(s) 720
PsiI TTATAA 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 1294
Psp6I CCWGG 1 cut(s) 1495
PspGI CCWGG 1 cut(s) 1495
PspN4I GGNNCC 2 cut(s) 597, 1295
PspPI GGNCC 5 cut(s) 158, 494, 596, 1199, 1294
PspPPI RGGWCCY 1 cut(s) 1294
PsrI GAACNNNNNNTAC 2 cut(s) 1297, 1329
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 5 cut(s) 323, 414, 650, 1145, 1368
RsaNI GTAC 5 cut(s) 322, 413, 649, 1144, 1367
RseI CAYNNNNRTG 2 cut(s) 1236, 1582
SatI GCNGC 6 cut(s) 457, 528, 611, 631, 906, 1002
Sau3AI GATC 2 cut(s) 269, 343
Sau96I GGNCC 5 cut(s) 158, 494, 596, 1199, 1294
SchI GAGTC 1 cut(s) 1360
ScrFI CCNGG 1 cut(s) 1497
SduI GDGCHC 1 cut(s) 1589
SfaNI GCATC 6 cut(s) 149, 202, 642, 798, 964, 1336
SfcI CTRYAG 1 cut(s) 1559
SfuI TTCGAA 2 cut(s) 304, 911
SinI GGWCC 4 cut(s) 158, 596, 1199, 1294
SmiMI CAYNNNNRTG 2 cut(s) 1236, 1582
SmlI CTYRAG 1 cut(s) 813
SmoI CTYRAG 1 cut(s) 813
SphI GCATGC 2 cut(s) 227, 1465
Sse9I AATT 9 cut(s) 29, 434, 468, 853, 1005, 1081, 1180, 1247, 1518
SseBI AGGCCT 1 cut(s) 1504
SsiI CCGC 5 cut(s) 201, 410, 631, 743, 818
SspI AATATT 1 cut(s) 1209
SspMI CTAG 2 cut(s) 291, 1431
StuI AGGCCT 1 cut(s) 1504
StyD4I CCNGG 1 cut(s) 1495
StyI CCWWGG 2 cut(s) 360, 929
TaaI ACNGT 3 cut(s) 166, 463, 925
TaqI TCGA 3 cut(s) 304, 911, 1221
TaqII GACCGA 1 cut(s) 1413
TasI AATT 9 cut(s) 29, 434, 468, 853, 1005, 1081, 1180, 1247, 1518
TatI WGTACW 2 cut(s) 1143, 1366
TauI GCSGC 1 cut(s) 633
TfiI GAWTC 3 cut(s) 74, 1468, 1537
TscAI CASTG 2 cut(s) 203, 466
TseFI GTSAC 4 cut(s) 584, 767, 869, 1225
TseI GCWGC 5 cut(s) 456, 527, 610, 905, 1001
Tsp45I GTSAC 4 cut(s) 584, 767, 869, 1225
TspDTI ATGAA 6 cut(s) 535, 998, 1226, 1405, 1617, 1640
TspRI CASTG 2 cut(s) 203, 466
VneI GTGCAC 1 cut(s) 1585
VpaK11BI GGWCC 4 cut(s) 158, 596, 1199, 1294
VspI ATTAAT 1 cut(s) 720
XapI RAATTY 2 cut(s) 1247, 1518
XceI RCATGY 3 cut(s) 227, 1465, 1626
XmiI GTMKAC 2 cut(s) 784, 917
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 2 cut(s) 291, 1431
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.