Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005190

Physical Location & Seq

Genomic Coordinates Forward (+)

56944836 .. 56946809

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G029250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1740 bp

ATGAGGCAGTTCAAGAGTTGTGTTGTAGATGAAATTGAAGTTGATCATCATGTGGAACCTGGAGAGGAGTCTGATGACTGGGCTATGGACAGCGATGATCTTGAGAGCCTTGATGAGAGTTCAAGTGATGAGGAGGTTAGTGAGCCTGTTAAGTACATGAAGCTTAAGAAAAAGCAACCAAAGTTCAAGCAGTATAGAAGAGATACTGACTTACGGGATCCATACTTCAAACTGGGTCTGGAGTTTCCAACTATGGCACAATGTAGGGAGGCCATAAGAAAATTATCTATCAAATCTGGAAGGCCACTAAGTTTTGATAAAAATGATTCTGACAAGGTTATAGTGAAATGTAAAGGACAATGTAAGGGAAGTTGTCCATTCAAAATATATGCATCTGTGGTTGGGAGTGGTCCTATTGTGAGGGTCAAGACATATGAGCCATTGCATCACTGCGGGAGGTCAAAAAAAATAAAGCATGCTACTTCTACTTGGATAGCAGACAGGTTTGATGAGGTCTTCAGATCCAATCCCAAAATAAAACCTAGAGACTTTATTCGAATGGTGGCTAAGCAGTACGGGATTGATGTTACACTTGATCAGTTTTATAAGGCCAAGGAAAAAGCTAAGAGGAGGATACGAGGTGGCATTCAGGAGCAATATAAGGGTTTCATTAAAGGTTGTAGAAAAGTAGTAGGATGTGATGGGTGTCACATTAAGGGTCCATACAAAGGGCAGCTTCTAAGTGCTGTAGGGGTCGATGCAAATAATGGTATGTACCCGATAGCATTTGCCATCCAAAAAGGTCTGCTTGATGCTATTGAAGAGTTAATGCCTCAAGCGGAACATAGGCATTGTGTTAGACACCTCTACAATAATTTTAAAGGTGCTTGTCACACAGGACTTGCATTGAAGCAAGGTATGTGGGCAGCTTCGAAGTCCACTACTGTTCCTTGGTTTGAAGAAGAAATGGACAAGGTATTAAGGCTGTGTAAAGATGCTCATGACTGGTTGAGAAAAAGGGCTGCAATTCATTGGAGTAGGTCGCATTTTAAAACTGAGGCCAAATGTGATATACTCCTTAACAATCTTTGTGAAGCATTCAATTCTGCCATATTGGAAGCAAGAGATAAACCTATCCTAACAATGCTGGAGAGGTTGAGAATGTACTTAATGCTGAGGATGGCAAAGCAAAGGGAGTTGAATTGGACACAACCTGTTGGACCAAGAATATTTGGTATTATCGAGAAAAACAGAGAACTGAGTAATAATTGCTATGCTGAATCTTCCATTGGAGGCCATTTCGAGGTCACTCATCTTCATGGAAGAAAATTTTATGTTAATATGGAGGATAGAACTTGCTCATGTCGAAAGTGGGACCTTTGTGGTATTCCATGTTCTCATGCAATGACTTGTCTTGGTTGGATGGATGCGAGTCCATATGATTTTGTACATAACCATTACAAGAGGGAGGCTTATGACCGAGCCTATGGTTACTTCATTTCCCCAATGTCCAGTCAAGACTTGTGGCCTAAAACTGGTGGCATGCCGATTCTTCCACCACTCTATCACAAACAACCAGGAAGGCCCAAAAAGAGAAGAATTTTAGAACCAAATGAGATTCCCAAAGGTGCAAAAAAGCTACAGAGATATCATGCCCCATCTAAGTGCACACTTTGTAAAAATGAAGGTCATAATAAGAGGACATGTCCTCAGGTATGTATTTTAAGCTTTCATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

579

Amino Acids

66.78

Weight (kDa)

9.24

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBD_Tnp_Mut	PF03108	77 - 134	6.2e-12	MuDR family transposase
SWIM	PF04434	446 - 469	2.5e-06	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13324
prunus_persica	Prupe.6G164700_v2.0.a1 Prupe.6G182100_v2.0.a1
pyrus_communis	pycom06g06460 pycom15g24790 pycom15g27610
rosa_chinensis	RchiOBHm_Chr5g0080361
rosa_laevigata	RLG00000018542 RLG00000036161 RLG00000036162
rosa_multiflora	Rmu_sc0007310.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288540 Rroxscaffold_4G00288590 Rroxscaffold_4G00323350
rosa_rugosa	Rorug01G0105500 Rorug01G0166300 Rorug02G0169100
rosa_samantha	Rh1AG080500 Rh1AG329900 Rh1BG311500 Rh1DG137800 Rh1DG343300 Rh2AG387800 Rh2CG375100 Rh3DG100300 Rh5BG152800 Rh5DG277500 Rh6AG151900
rosa_wichuraiana	Rw1G029250 Rw5G024840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AciI	CCGC	2 cut(s)	453, 839
AclWI	GGATC	3 cut(s)	212, 225, 516
AcsI	RAATTY	2 cut(s)	1328, 1599
AcuI	CTGAAG	1 cut(s)	502
AfaI	GTAC	5 cut(s)	155, 575, 776, 1166, 1449
AfiI	CCNNNNNNNGG	3 cut(s)	728, 1303, 1535
AflII	CTTAAG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	1703
AjnI	CCWGG	2 cut(s)	58, 1576
AjuI	GAANNNNNNNTTGG	2 cut(s)	1272, 1304
AluBI	AGCT	6 cut(s)	163, 623, 736, 929, 1639, 1728
AluI	AGCT	6 cut(s)	163, 623, 736, 929, 1639, 1728
Alw21I	GWGCWC	1 cut(s)	1670
Alw26I	GTCTC	1 cut(s)	540
Alw44I	GTGCAC	1 cut(s)	1666
AlwI	GGATC	3 cut(s)	212, 225, 516
AoxI	GGCC	7 cut(s)	270, 302, 609, 1059, 1294, 1526, 1583
ApaLI	GTGCAC	1 cut(s)	1666
ApeKI	GCWGC	3 cut(s)	733, 926, 1022
ApoI	RAATTY	2 cut(s)	1328, 1599
AspS9I	GGNCC	5 cut(s)	410, 719, 1220, 1375, 1584
AsuII	TTCGAA	2 cut(s)	556, 932
AvaII	GGWCC	4 cut(s)	410, 719, 1220, 1375
AxyI	CCTNAGG	1 cut(s)	1710
BaeGI	GKGCMC	1 cut(s)	1670
BamHI	GGATCC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	508
Bbv12I	GWGCWC	1 cut(s)	1670
BbvCI	CCTCAGC	1 cut(s)	1175
BbvI	GCAGC	3 cut(s)	745, 938, 1009
BccI	CCATC	5 cut(s)	695, 800, 1174, 1417, 1666
BciT130I	CCWGG	2 cut(s)	60, 1578
BciVI	GTATCC	1 cut(s)	627
BclI	TGATCA	2 cut(s)	43, 595
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	2 cut(s)	747, 1640
BfrI	CTTAAG	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	627
BisI	GCNGC	3 cut(s)	734, 927, 1023
BlpI	GCTNAGC	1 cut(s)	567
BlsI	GCNGC	3 cut(s)	735, 928, 1024
Bme1390I	CCNGG	2 cut(s)	60, 1578
Bme18I	GGWCC	4 cut(s)	410, 719, 1220, 1375
BmgT120I	GGNCC	5 cut(s)	410, 719, 1220, 1375, 1584
BmiI	GGNNCC	4 cut(s)	57, 219, 720, 1376
BmrFI	CCNGG	2 cut(s)	60, 1578
BmrI	ACTGGG	2 cut(s)	88, 242
BmsI	GCATC	6 cut(s)	401, 454, 748, 802, 985, 1417
BmuI	ACTGGG	2 cut(s)	88, 242
BpiI	GAAGAC	1 cut(s)	508
BpmI	CTGGAG	3 cut(s)	81, 260, 1169
Bpu10I	CCTNAGC	1 cut(s)	1175
Bpu1102I	GCTNAGC	1 cut(s)	567
Bpu14I	TTCGAA	2 cut(s)	556, 932
BpuEI	CTTGAG	2 cut(s)	122, 819
BsaJI	CCNNGG	2 cut(s)	612, 950
Bsc4I	CCNNNNNNNGG	3 cut(s)	728, 1303, 1535
Bse1I	ACTGG	5 cut(s)	83, 237, 1010, 1512, 1540
Bse21I	CCTNAGG	1 cut(s)	1710
Bse3DI	GCAATG	2 cut(s)	440, 1410
BseBI	CCWGG	2 cut(s)	60, 1578
BseDI	CCNNGG	2 cut(s)	612, 950
BseGI	GGATG	5 cut(s)	701, 792, 1185, 1428, 1432
BseLI	CCNNNNNNNGG	3 cut(s)	728, 1303, 1535
BseMI	GCAATG	2 cut(s)	440, 1410
BseMII	CTCAG	4 cut(s)	1047, 1166, 1250, 1724
BseNI	ACTGG	5 cut(s)	83, 237, 1010, 1512, 1540
BseRI	GAGGAG	3 cut(s)	80, 146, 643
BseSI	GKGCMC	1 cut(s)	1670
BseXI	GCAGC	3 cut(s)	745, 938, 1009
BshFI	GGCC	7 cut(s)	272, 304, 611, 1061, 1296, 1528, 1585
BsiHKAI	GWGCWC	1 cut(s)	1670
BslFI	GGGAC	1 cut(s)	1388
BslI	CCNNNNNNNGG	3 cut(s)	728, 1303, 1535
BsmAI	GTCTC	1 cut(s)	540
BsmFI	GGGAC	1 cut(s)	1388
BsmI	GAATGC	2 cut(s)	645, 1097
BsnI	GGCC	7 cut(s)	272, 304, 611, 1061, 1296, 1528, 1585
Bsp119I	TTCGAA	2 cut(s)	556, 932
Bsp1286I	GDGCHC	1 cut(s)	1670
Bsp1407I	TGTACA	1 cut(s)	1447
Bsp143I	GATC	5 cut(s)	43, 97, 217, 521, 595
Bsp1720I	GCTNAGC	1 cut(s)	567
BspACI	CCGC	2 cut(s)	453, 839
BspANI	GGCC	7 cut(s)	272, 304, 611, 1061, 1296, 1528, 1585
BspCNI	CTCAG	4 cut(s)	1048, 1167, 1251, 1723
BspHI	TCATGA	1 cut(s)	1000
BspLI	GGNNCC	4 cut(s)	57, 219, 720, 1376
BspPI	GGATC	3 cut(s)	212, 225, 516
BspT104I	TTCGAA	2 cut(s)	556, 932
BspTI	CTTAAG	1 cut(s)	164
BsrDI	GCAATG	2 cut(s)	440, 1410
BsrGI	TGTACA	1 cut(s)	1447
BsrI	ACTGG	5 cut(s)	83, 237, 1010, 1512, 1540
BssECI	CCNNGG	2 cut(s)	612, 950
BssMI	GATC	5 cut(s)	43, 97, 217, 521, 595
BssT1I	CCWWGG	2 cut(s)	612, 950
Bst2UI	CCWGG	2 cut(s)	60, 1578
Bst4CI	ACNGT	1 cut(s)	946
Bst6I	CTCTTC	2 cut(s)	193, 816
BstAFI	CTTAAG	1 cut(s)	164
BstAUI	TGTACA	1 cut(s)	1447
BstBI	TTCGAA	2 cut(s)	556, 932
BstC8I	GCNNGC	2 cut(s)	477, 1544
BstDEI	CTNAG	9 cut(s)	308, 567, 624, 740, 1056, 1175, 1259, 1662, 1710
BstF5I	GGATG	5 cut(s)	701, 792, 1185, 1428, 1432
BstKTI	GATC	5 cut(s)	46, 100, 220, 524, 598
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	5 cut(s)	43, 97, 217, 521, 595
BstNI	CCWGG	2 cut(s)	60, 1578
BstNSI	RCATGY	3 cut(s)	479, 1546, 1707
BstSCI	CCNGG	2 cut(s)	58, 1576
BstSFI	CTRYAG	2 cut(s)	747, 1640
BstSLI	GKGCMC	1 cut(s)	1670
BstV1I	GCAGC	3 cut(s)	745, 938, 1009
BstV2I	GAAGAC	1 cut(s)	508
BstX2I	RGATCY	2 cut(s)	217, 521
BstYI	RGATCY	2 cut(s)	217, 521
Bsu36I	CCTNAGG	1 cut(s)	1710
BsuI	GTATCC	1 cut(s)	627
BsuRI	GGCC	7 cut(s)	272, 304, 611, 1061, 1296, 1528, 1585
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	5 cut(s)	701, 792, 1185, 1428, 1432
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	448
Cac8I	GCNNGC	2 cut(s)	477, 1544
CciI	TCATGA	1 cut(s)	1000
Cfr13I	GGNCC	5 cut(s)	410, 719, 1220, 1375, 1584
Csp6I	GTAC	5 cut(s)	154, 574, 775, 1165, 1448
CspCI	CAANNNNNGTGG	4 cut(s)	902, 937, 1505, 1540
CviQI	GTAC	5 cut(s)	154, 574, 775, 1165, 1448
DdeI	CTNAG	9 cut(s)	308, 567, 624, 740, 1056, 1175, 1259, 1662, 1710
DpnI	GATC	5 cut(s)	45, 99, 219, 523, 597
DpnII	GATC	5 cut(s)	43, 97, 217, 521, 595
DraI	TTTAAA	2 cut(s)	880, 1051
Eam1104I	CTCTTC	2 cut(s)	193, 816
EarI	CTCTTC	2 cut(s)	193, 816
Eco130I	CCWWGG	2 cut(s)	612, 950
Eco32I	GATATC	1 cut(s)	1649
Eco47I	GGWCC	4 cut(s)	410, 719, 1220, 1375
Eco57I	CTGAAG	1 cut(s)	502
Eco81I	CCTNAGG	1 cut(s)	1710
EcoO109I	RGGNCCY	1 cut(s)	1375
EcoRII	CCWGG	2 cut(s)	58, 1576
EcoRV	GATATC	1 cut(s)	1649
EcoT14I	CCWWGG	2 cut(s)	612, 950
EcoT22I	ATGCAT	1 cut(s)	394
ErhI	CCWWGG	2 cut(s)	612, 950
FalI	AAGNNNNNCTT	4 cut(s)	720, 752, 792, 824
FaqI	GGGAC	1 cut(s)	1388
FauI	CCCGC	1 cut(s)	446
FauNDI	CATATG	2 cut(s)	433, 1438
FbaI	TGATCA	2 cut(s)	43, 595
Fnu4HI	GCNGC	3 cut(s)	734, 927, 1023
FokI	GGATG	5 cut(s)	708, 779, 1192, 1435, 1439
Fsp4HI	GCNGC	3 cut(s)	734, 927, 1023
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	3 cut(s)	734, 927, 1023
GsuI	CTGGAG	3 cut(s)	81, 260, 1169
HaeIII	GGCC	7 cut(s)	272, 304, 611, 1061, 1296, 1528, 1585
HindIII	AAGCTT	2 cut(s)	161, 1726
HinfI	GANTC	6 cut(s)	68, 326, 1280, 1432, 1549, 1618
Hpy166II	GTNNAC	2 cut(s)	939, 1668
Hpy188I	TCNGA	3 cut(s)	73, 331, 521
Hpy188III	TCNNGA	9 cut(s)	13, 101, 239, 297, 427, 650, 1001, 1243, 1517
Hpy8I	GTNNAC	2 cut(s)	939, 1668
HpyAV	CCTTC	3 cut(s)	294, 1575, 1679
HpyCH4III	ACNGT	1 cut(s)	946
HpyCH4V	TGCA	8 cut(s)	392, 445, 761, 905, 1025, 1403, 1631, 1668
HpyF3I	CTNAG	9 cut(s)	308, 567, 624, 740, 1056, 1175, 1259, 1662, 1710
Ksp22I	TGATCA	2 cut(s)	43, 595
Kzo9I	GATC	5 cut(s)	43, 97, 217, 521, 595
LmnI	GCTCC	1 cut(s)	652
Lsp1109I	GCAGC	3 cut(s)	745, 938, 1009
LweI	GCATC	6 cut(s)	401, 454, 748, 802, 985, 1417
MaeI	CTAG	1 cut(s)	543
MaeIII	GTNAC	5 cut(s)	586, 707, 890, 1306, 1490
MalI	GATC	5 cut(s)	45, 99, 219, 523, 597
MboI	GATC	5 cut(s)	43, 97, 217, 521, 595
MflI	RGATCY	2 cut(s)	217, 521
MhlI	GDGCHC	1 cut(s)	1670
MluCI	AATT	9 cut(s)	33, 281, 874, 1026, 1102, 1201, 1267, 1328, 1599
MlyI	GAGTC	2 cut(s)	77, 1441
MmeI	TCCRAC	3 cut(s)	272, 1198, 1400
Mph1103I	ATGCAT	1 cut(s)	394
MslI	CAYNNNNRTG	2 cut(s)	1317, 1663
MspCI	CTTAAG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	60, 1578
Mva1269I	GAATGC	2 cut(s)	645, 1097
MvaI	CCWGG	2 cut(s)	60, 1578
NdeI	CATATG	2 cut(s)	433, 1438
NdeII	GATC	5 cut(s)	43, 97, 217, 521, 595
NlaIV	GGNNCC	4 cut(s)	57, 219, 720, 1376
NmuCI	GTSAC	3 cut(s)	707, 890, 1306
NsiI	ATGCAT	1 cut(s)	394
NspI	RCATGY	3 cut(s)	479, 1546, 1707
NspV	TTCGAA	2 cut(s)	556, 932
PaeI	GCATGC	2 cut(s)	479, 1546
PagI	TCATGA	1 cut(s)	1000
PciI	ACATGT	1 cut(s)	1703
PctI	GAATGC	2 cut(s)	645, 1097
PfeI	GAWTC	4 cut(s)	326, 1280, 1549, 1618
PkrI	GCNGC	3 cut(s)	735, 928, 1024
PleI	GAGTC	2 cut(s)	76, 1440
PpsI	GAGTC	2 cut(s)	76, 1440
PpuMI	RGGWCCY	1 cut(s)	1375
PscI	ACATGT	1 cut(s)	1703
PsiI	TTATAA	1 cut(s)	606
Psp5II	RGGWCCY	1 cut(s)	1375
Psp6I	CCWGG	2 cut(s)	58, 1576
PspGI	CCWGG	2 cut(s)	58, 1576
PspN4I	GGNNCC	4 cut(s)	57, 219, 720, 1376
PspPI	GGNCC	5 cut(s)	410, 719, 1220, 1375, 1584
PspPPI	RGGWCCY	1 cut(s)	1375
PsrI	GAACNNNNNNTAC	2 cut(s)	1378, 1410
PsuI	RGATCY	2 cut(s)	217, 521
RsaI	GTAC	5 cut(s)	155, 575, 776, 1166, 1449
RsaNI	GTAC	5 cut(s)	154, 574, 775, 1165, 1448
RseI	CAYNNNNRTG	2 cut(s)	1317, 1663
SatI	GCNGC	3 cut(s)	734, 927, 1023
Sau3AI	GATC	5 cut(s)	43, 97, 217, 521, 595
Sau96I	GGNCC	5 cut(s)	410, 719, 1220, 1375, 1584
SchI	GAGTC	2 cut(s)	77, 1441
ScrFI	CCNGG	2 cut(s)	60, 1578
SduI	GDGCHC	1 cut(s)	1670
SfaNI	GCATC	6 cut(s)	401, 454, 748, 802, 985, 1417
SfcI	CTRYAG	2 cut(s)	747, 1640
SfuI	TTCGAA	2 cut(s)	556, 932
SinI	GGWCC	4 cut(s)	410, 719, 1220, 1375
SmiMI	CAYNNNNRTG	2 cut(s)	1317, 1663
SmlI	CTYRAG	3 cut(s)	101, 164, 834
SmoI	CTYRAG	3 cut(s)	101, 164, 834
SphI	GCATGC	2 cut(s)	479, 1546
Sse9I	AATT	9 cut(s)	33, 281, 874, 1026, 1102, 1201, 1267, 1328, 1599
SsiI	CCGC	2 cut(s)	453, 839
SspI	AATATT	1 cut(s)	1230
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	58, 1576
StyI	CCWWGG	2 cut(s)	612, 950
TaaI	ACNGT	1 cut(s)	946
TaqI	TCGA	6 cut(s)	556, 756, 932, 1242, 1302, 1366
TaqII	GACCGA	1 cut(s)	1494
TasI	AATT	9 cut(s)	33, 281, 874, 1026, 1102, 1201, 1267, 1328, 1599
TatI	WGTACW	3 cut(s)	153, 1164, 1447
TfiI	GAWTC	4 cut(s)	326, 1280, 1549, 1618
TscAI	CASTG	1 cut(s)	455
TseFI	GTSAC	3 cut(s)	707, 890, 1306
TseI	GCWGC	3 cut(s)	733, 926, 1022
Tsp45I	GTSAC	3 cut(s)	707, 890, 1306
TspDTI	ATGAA	8 cut(s)	45, 173, 658, 1019, 1307, 1486, 1698, 1721
TspRI	CASTG	1 cut(s)	455
Vha464I	CTTAAG	1 cut(s)	164
VneI	GTGCAC	1 cut(s)	1666
VpaK11BI	GGWCC	4 cut(s)	410, 719, 1220, 1375
XapI	RAATTY	2 cut(s)	1328, 1599
XceI	RCATGY	3 cut(s)	479, 1546, 1707
XspI	CTAG	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.