Rh1AG080500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005190
Physical Location & Seq
Reverse (-)
13770252 .. 13772010
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG080500.1

Sequence Viewer

Length: 747 bp
ATGGAGATGTTCCAAACTAATGCTACAGCTGATCCAGACAATTTTACTCTTGAAATTAGACATGGGGCTGTATTTTCTAGTGGAGAGTATGTGGGTGGTTCTGTATGTTGGGCAGACAACTATGATGTTAACTTATTTAGCAAGTGGGACTTGGCAGTAATTGCCAGAAATCTTGGATATGATATTGAGAGAATTCAATACTTTTTCTACCATAAAACTGATGGTTTGGTAGAGATAGATAGTGACATAAGGGTTCTAGAGTGTTCACTAAACCAATCCACTAGAAAGGTTTCTGTTGCCTATATTAGTGATTGCATAGTTTTGGATAAAACTCTTGCATTTAATGAAGAATCACAAGTTACTCATCATGTTCAAGCTGACAATGAAGCGGGTGCAGATGGAGATGATGAAGCAGATTATGATATAGGACTTGTTGATGTTAATGTCTTGGCAGATAATGATTTGGACGGAGATTCCAGCAATGATGAAGATGTACTGGATCCTGAAGATGCACAGTGGTTTGTGGATGAAGAATATGTTCAGAGCGATGAAGATATGAGCCAGTTCAAGAGTTGTGTTGTAGATGAAATTGAAGTTGATCATCATGTGGAACCTGGAGAGGAGTCTGATGACTGGGCTATGGACAGCAATGATCTTGAGAGCCTTGATGAGAGTTCAAGTGATGAGGAGGTTAATGAGCCTGTTAAGTACATGAAGCCTAAGAAAAAGCAACCAAAGTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

248

Amino Acids

28.06

Weight (kDa)

4.05

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 13 - 87 1.2e-07 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 389
AclWI GGATC 3 cut(s) 26, 494, 507
AcsI RAATTY 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 525
AfaI GTAC 2 cut(s) 495, 710
AgsI TTSAA 7 cut(s) 53, 197, 374, 568, 593, 678, 742
AjnI CCWGG 1 cut(s) 613
AluBI AGCT 2 cut(s) 29, 377
AluI AGCT 2 cut(s) 29, 377
AlwI GGATC 3 cut(s) 26, 494, 507
ApoI RAATTY 1 cut(s) 192
Asp700I GAANNNNTTC 2 cut(s) 289, 537
BamHI GGATCC 1 cut(s) 499
BccI CCATC 2 cut(s) 215, 392
BciT130I CCWGG 1 cut(s) 615
BclI TGATCA 1 cut(s) 598
BfaI CTAG 3 cut(s) 78, 257, 282
BfmI CTRYAG 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 615
BmiI GGNNCC 2 cut(s) 501, 612
BmrFI CCNGG 1 cut(s) 615
BmrI ACTGGG 1 cut(s) 643
BmsI GCATC 1 cut(s) 499
BmuI ACTGGG 1 cut(s) 643
BpmI CTGGAG 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 677
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bse1I ACTGG 3 cut(s) 501, 562, 638
Bse3DI GCAATG 2 cut(s) 487, 655
BseBI CCWGG 1 cut(s) 615
BseGI GGATG 1 cut(s) 532
BseMI GCAATG 2 cut(s) 487, 655
BseNI ACTGG 3 cut(s) 501, 562, 638
BseRI GAGGAG 2 cut(s) 635, 701
BsgI GTGCAG 1 cut(s) 414
BslFI GGGAC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 161
Bsp143I GATC 4 cut(s) 31, 499, 598, 652
BspACI CCGC 1 cut(s) 389
BspLI GGNNCC 2 cut(s) 501, 612
BspPI GGATC 3 cut(s) 26, 494, 507
BsrDI GCAATG 2 cut(s) 487, 655
BsrI ACTGG 3 cut(s) 501, 562, 638
BssMI GATC 4 cut(s) 31, 499, 598, 652
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 1 cut(s) 516
BstAPI GCANNNNNTGC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 720
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 4 cut(s) 34, 502, 601, 655
BstMBI GATC 4 cut(s) 31, 499, 598, 652
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 615
BstSCI CCNGG 1 cut(s) 613
BstSFI CTRYAG 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 1 cut(s) 521
Csp6I GTAC 2 cut(s) 494, 709
CviAII CATG 4 cut(s) 62, 368, 605, 712
CviJI RGCY 8 cut(s) 29, 68, 377, 561, 638, 663, 700, 718
CviKI_1 RGCY 8 cut(s) 29, 68, 377, 561, 638, 663, 700, 718
CviQI GTAC 2 cut(s) 494, 709
DdeI CTNAG 1 cut(s) 720
DpnI GATC 4 cut(s) 33, 501, 600, 654
DpnII GATC 4 cut(s) 31, 499, 598, 652
Eco57I CTGAAG 1 cut(s) 525
EcoRI GAATTC 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 613
FaeI CATG 4 cut(s) 65, 371, 608, 715
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 161
FatI CATG 4 cut(s) 61, 367, 604, 711
FauI CCCGC 1 cut(s) 382
FbaI TGATCA 1 cut(s) 598
FokI GGATG 1 cut(s) 539
FspBI CTAG 3 cut(s) 78, 257, 282
GsuI CTGGAG 1 cut(s) 636
Hin1II CATG 4 cut(s) 65, 371, 608, 715
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 3 cut(s) 350, 473, 623
HpaI GTTAAC 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 130, 266
Hpy188I TCNGA 2 cut(s) 543, 628
Hpy188III TCNNGA 6 cut(s) 35, 50, 257, 503, 568, 656
Hpy8I GTNNAC 2 cut(s) 130, 266
HpyCH4III ACNGT 1 cut(s) 516
HpyCH4V TGCA 4 cut(s) 315, 338, 395, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 720
Hsp92II CATG 4 cut(s) 65, 371, 608, 715
Ksp22I TGATCA 1 cut(s) 598
KspAI GTTAAC 1 cut(s) 130
Kzo9I GATC 4 cut(s) 31, 499, 598, 652
LweI GCATC 1 cut(s) 499
MaeI CTAG 3 cut(s) 78, 257, 282
MaeIII GTNAC 2 cut(s) 242, 358
MalI GATC 4 cut(s) 33, 501, 600, 654
MboI GATC 4 cut(s) 31, 499, 598, 652
MboII GAAGA 5 cut(s) 359, 500, 518, 542, 563
MflI RGATCY 1 cut(s) 499
MluCI AATT 5 cut(s) 40, 54, 159, 192, 588
MlyI GAGTC 1 cut(s) 632
MnlI CCTC 3 cut(s) 613, 679, 682
MroXI GAANNNNTTC 2 cut(s) 289, 537
MseI TTAA 5 cut(s) 129, 342, 441, 693, 705
MspA1I CMGCKG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 615
MvaI CCWGG 1 cut(s) 615
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 4 cut(s) 31, 499, 598, 652
NlaIII CATG 4 cut(s) 65, 371, 608, 715
NlaIV GGNNCC 2 cut(s) 501, 612
NmuCI GTSAC 1 cut(s) 242
PdmI GAANNNNTTC 2 cut(s) 289, 537
PfeI GAWTC 2 cut(s) 350, 473
PleI GAGTC 1 cut(s) 631
PpsI GAGTC 1 cut(s) 631
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 2 cut(s) 501, 612
PsuI RGATCY 1 cut(s) 499
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 2 cut(s) 495, 710
RsaNI GTAC 2 cut(s) 494, 709
SaqAI TTAA 5 cut(s) 129, 342, 441, 693, 705
Sau3AI GATC 4 cut(s) 31, 499, 598, 652
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 1 cut(s) 615
SetI ASST 5 cut(s) 31, 291, 379, 616, 693
SfaNI GCATC 1 cut(s) 499
SfcI CTRYAG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 656
SmoI CTYRAG 1 cut(s) 656
Sse9I AATT 5 cut(s) 40, 54, 159, 192, 588
SsiI CCGC 1 cut(s) 389
SspMI CTAG 3 cut(s) 78, 257, 282
StyD4I CCNGG 1 cut(s) 613
TaaI ACNGT 1 cut(s) 516
TasI AATT 5 cut(s) 40, 54, 159, 192, 588
TatI WGTACW 2 cut(s) 493, 708
TfiI GAWTC 2 cut(s) 350, 473
Tru1I TTAA 5 cut(s) 129, 342, 441, 693, 705
Tru9I TTAA 5 cut(s) 129, 342, 441, 693, 705
TscAI CASTG 1 cut(s) 521
TseFI GTSAC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 8 cut(s) 360, 399, 423, 501, 543, 564, 600, 728
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 1 cut(s) 521
XapI RAATTY 1 cut(s) 192
XbaI TCTAGA 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 218
XmnI GAANNNNTTC 2 cut(s) 289, 537
XspI CTAG 3 cut(s) 78, 257, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.