Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005190

Physical Location & Seq

Genomic Coordinates Forward (+)

19108313 .. 19109571

Gene Structure 1259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g24790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGAAGAGGTTACAAATTCAGAAAAAGAGGAAGATGACGATGGGATTACTCTTAAGTTCAAGGATTCTGACTATGAACAATCTGAGGAAGATGATGATAAAGGTGCAAAAAATTGATTCTATTGAAGAAACACACAGAGAACTTGGTGAGATCTCCACTGAAGAATACAATTCAGAAGATTTAGATAGTGTTAGGTCTGAGTCTGAAGAGCATGAAGCCAATGTGAGGGTTAGAAGAAGACTCAAAACACCTAAGCTACCTCAATATAGGAGAGAGTCAGATAAAATTAATCCCACTCTTCATCTAGGGCTGGAATTCCCAAACATGAAACAATGCAGGGAGGCAGTAAGGGCATATGGCGTGTCTGTTTGTCGACCGTTAGATTGGGCAGTGAATGATTCCAACAGATTACGGATCAAATGTCTAGGAAAAGCTGCAGTACCTTGTCAATGGAAATTGTATGCCTCTTTTGTGGGGAAGGGACCAACAGTTAGAATTAAAACGTATAATCCTGAACACATTTGTGTAAGGGAGGAGCATTCTAAATTTGCCACCTCCTCTTGGTTAGCTGATCGGTTCGATGAGGAGCTTGGATTGAAACCCGATATAAGTGTGACTGGTTTCATGGAACTTGTGAGAAAGCATTATGGTATTGACATAACAAAAAACCAAGTTTACAAAGCAAAGAGAATTGCCAAAAAAGTAACAGAAGGTAGTATAGATGAGCAATATGCCAAGCTTTGGGATTACCTGGAAGAGTTGAAAGTGAGAAATCTGGGGAGTACTATCAAAGTAAAAACAGATTTCCAAGGTGAAAACCCTATTTTTAAAAGGTTGTACATATGCTTTGCTGCATTGAAGAAAGGCTTTCAACAAGGGTGTAGGTCTATAGTGGGTTTTGATGGATGTCATATTAAGGGACCCCATCCTGGTCAAATCTTAAGTGTTGTTGGTGTTGATGCCAATAACGGCATGTTTCCAATAGCATTTGCTGTTGTGGAGGTGGAAAATAGGGAGACTTGGACTTGGTTTTTGGAGATCTTTTTCGAGGATGTGGAAATTGAGAATGGAAATGCTTGGACATTCATCACTGACAAACAAAAAGGACTAGGCGATGCTATTCGGAGTCTGATGCCAACTGCAGAACACAGACATTGTGTTAGACATTTGCATAATAATTTTAGAAGTGCAGGTCACACTAGACTTGCCTTAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

406

Amino Acids

46.73

Weight (kDa)

9.32

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13324
prunus_persica	Prupe.6G164700_v2.0.a1 Prupe.6G182100_v2.0.a1
pyrus_communis	pycom06g06460 pycom15g24790 pycom15g27610
rosa_chinensis	RchiOBHm_Chr5g0080361
rosa_laevigata	RLG00000018542 RLG00000036161 RLG00000036162
rosa_multiflora	Rmu_sc0007310.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288540 Rroxscaffold_4G00288590 Rroxscaffold_4G00323350
rosa_rugosa	Rorug01G0105500 Rorug01G0166300 Rorug02G0169100
rosa_samantha	Rh1AG080500 Rh1AG329900 Rh1BG311500 Rh1DG137800 Rh1DG343300 Rh2AG387800 Rh2CG375100 Rh3DG100300 Rh5BG152800 Rh5DG277500 Rh6AG151900
rosa_wichuraiana	Rw1G029250 Rw5G024840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1181
AccB7I	CCANNNNNTGG	1 cut(s)	741
AccI	GTMKAC	1 cut(s)	373
AclWI	GGATC	1 cut(s)	422
AcsI	RAATTY	3 cut(s)	15, 314, 545
AcuI	CTGAAG	2 cut(s)	180, 225
AfaI	GTAC	3 cut(s)	441, 784, 839
AfiI	CCNNNNNNNGG	4 cut(s)	225, 561, 741, 929
AflII	CTTAAG	2 cut(s)	52, 940
AgsI	TTSAA	6 cut(s)	60, 125, 598, 763, 859, 872
AjnI	CCWGG	2 cut(s)	750, 928
AleI	CACNNNNGTG	1 cut(s)	522
AluBI	AGCT	5 cut(s)	256, 434, 569, 589, 739
AluI	AGCT	5 cut(s)	256, 434, 569, 589, 739
Alw26I	GTCTC	1 cut(s)	1010
AlwI	GGATC	1 cut(s)	422
ApeKI	GCWGC	2 cut(s)	434, 851
ApoI	RAATTY	3 cut(s)	15, 314, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	1015, 1047
AseI	ATTAAT	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	482, 920
AsuHPI	GGTGA	2 cut(s)	158, 824
AvaII	GGWCC	2 cut(s)	482, 920
BbsI	GAAGAC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	421, 838
BccI	CCATC	3 cut(s)	34, 896, 933
BceAI	ACGGC	1 cut(s)	985
BciT130I	CCWGG	2 cut(s)	752, 930
BcoDI	GTCTC	1 cut(s)	1010
BfaI	CTAG	4 cut(s)	305, 425, 1109, 1200
BfmI	CTRYAG	3 cut(s)	435, 888, 1140
BfrI	CTTAAG	2 cut(s)	52, 940
BfuAI	ACCTGC	1 cut(s)	1181
BglII	AGATCT	2 cut(s)	150, 1038
BisI	GCNGC	2 cut(s)	435, 852
BlsI	GCNGC	2 cut(s)	436, 853
BmcAI	AGTACT	1 cut(s)	784
Bme1390I	CCNGG	2 cut(s)	752, 930
Bme18I	GGWCC	2 cut(s)	482, 920
BmgT120I	GGNCC	2 cut(s)	482, 920
BmiI	GGNNCC	3 cut(s)	483, 921, 922
BmrFI	CCNGG	2 cut(s)	752, 930
BmsI	GCATC	3 cut(s)	949, 1105, 1122
BpiI	GAAGAC	1 cut(s)	244
Bpu10I	CCTNAGC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	808
Bsc4I	CCNNNNNNNGG	4 cut(s)	225, 561, 741, 929
Bse1I	ACTGG	1 cut(s)	622
BseBI	CCWGG	2 cut(s)	752, 930
BseDI	CCNNGG	1 cut(s)	808
BseGI	GGATG	3 cut(s)	911, 925, 1057
BseLI	CCNNNNNNNGG	4 cut(s)	225, 561, 741, 929
BseMII	CTCAG	2 cut(s)	74, 189
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	3 cut(s)	547, 548, 599
BseXI	GCAGC	2 cut(s)	421, 838
BsgI	GTGCAG	1 cut(s)	1209
Bsh1285I	CGRYCG	1 cut(s)	377
BsiEI	CGRYCG	1 cut(s)	377
BslFI	GGGAC	2 cut(s)	495, 933
BslI	CCNNNNNNNGG	4 cut(s)	225, 561, 741, 929
BsmAI	GTCTC	1 cut(s)	1010
BsmFI	GGGAC	2 cut(s)	495, 933
BsmI	GAATGC	1 cut(s)	538
Bsp1407I	TGTACA	1 cut(s)	837
Bsp143I	GATC	4 cut(s)	150, 414, 571, 1038
BspCNI	CTCAG	2 cut(s)	75, 190
BspLI	GGNNCC	3 cut(s)	483, 921, 922
BspMAI	CTGCAG	2 cut(s)	439, 1144
BspMI	ACCTGC	1 cut(s)	1181
BspPI	GGATC	1 cut(s)	422
BspQI	GCTCTTC	1 cut(s)	201
BspTI	CTTAAG	2 cut(s)	52, 940
BsrGI	TGTACA	1 cut(s)	837
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	1 cut(s)	808
BssMI	GATC	4 cut(s)	150, 414, 571, 1038
BssT1I	CCWWGG	1 cut(s)	808
Bst2UI	CCWGG	2 cut(s)	752, 930
Bst4CI	ACNGT	2 cut(s)	378, 490
Bst6I	CTCTTC	3 cut(s)	201, 303, 750
BstAFI	CTTAAG	2 cut(s)	52, 940
BstAUI	TGTACA	1 cut(s)	837
BstDEI	CTNAG	3 cut(s)	83, 198, 252
BstF5I	GGATG	3 cut(s)	911, 925, 1057
BstKTI	GATC	4 cut(s)	153, 417, 574, 1041
BstMAI	GTCTC	1 cut(s)	1010
BstMBI	GATC	4 cut(s)	150, 414, 571, 1038
BstMCI	CGRYCG	1 cut(s)	377
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	2 cut(s)	752, 930
BstNSI	RCATGY	1 cut(s)	976
BstSCI	CCNGG	2 cut(s)	750, 928
BstSFI	CTRYAG	3 cut(s)	435, 888, 1140
BstV1I	GCAGC	2 cut(s)	421, 838
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	2 cut(s)	150, 1038
BstYI	RGATCY	2 cut(s)	150, 1038
BtgZI	GCGATG	1 cut(s)	1128
BtsCI	GGATG	3 cut(s)	911, 925, 1057
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	3 cut(s)	156, 396, 1089
BveI	ACCTGC	1 cut(s)	1181
Cfr13I	GGNCC	2 cut(s)	482, 920
Csp6I	GTAC	3 cut(s)	440, 783, 838
CviAII	CATG	4 cut(s)	212, 325, 625, 973
CviJI	RGCY	8 cut(s)	218, 256, 310, 434, 569, 589, 739, 867
CviKI_1	RGCY	8 cut(s)	218, 256, 310, 434, 569, 589, 739, 867
CviQI	GTAC	3 cut(s)	440, 783, 838
DdeI	CTNAG	3 cut(s)	83, 198, 252
DpnI	GATC	4 cut(s)	152, 416, 573, 1040
DpnII	GATC	4 cut(s)	150, 414, 571, 1038
DraI	TTTAAA	1 cut(s)	829
Eam1104I	CTCTTC	3 cut(s)	201, 303, 750
EarI	CTCTTC	3 cut(s)	201, 303, 750
Eco130I	CCWWGG	1 cut(s)	808
Eco47I	GGWCC	2 cut(s)	482, 920
Eco57I	CTGAAG	2 cut(s)	180, 225
EcoO109I	RGGNCCY	1 cut(s)	920
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	750, 928
EcoT14I	CCWWGG	1 cut(s)	808
ErhI	CCWWGG	1 cut(s)	808
FaeI	CATG	4 cut(s)	215, 328, 628, 976
FalI	AAGNNNNNCTT	2 cut(s)	851, 883
FaqI	GGGAC	2 cut(s)	495, 933
FatI	CATG	4 cut(s)	211, 324, 624, 972
FauNDI	CATATG	2 cut(s)	355, 842
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	2 cut(s)	435, 852
FokI	GGATG	3 cut(s)	912, 918, 1064
Fsp4HI	GCNGC	2 cut(s)	435, 852
FspBI	CTAG	4 cut(s)	305, 425, 1109, 1200
GluI	GCNGC	2 cut(s)	435, 852
Hin1II	CATG	4 cut(s)	215, 328, 628, 976
HincII	GTYRAC	1 cut(s)	374
HindII	GTYRAC	1 cut(s)	374
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	7 cut(s)	64, 116, 200, 240, 275, 398, 1126
HphI	GGTGA	2 cut(s)	158, 824
Hpy166II	GTNNAC	2 cut(s)	374, 676
Hpy188I	TCNGA	9 cut(s)	21, 69, 84, 175, 199, 205, 280, 1125, 1131
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	2 cut(s)	374, 676
HpyAV	CCTTC	2 cut(s)	472, 704
HpyCH4III	ACNGT	2 cut(s)	378, 490
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	7 cut(s)	106, 336, 437, 854, 1142, 1171, 1190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	3 cut(s)	83, 198, 252
HpySE526I	ACGT	1 cut(s)	503
Hsp92II	CATG	4 cut(s)	215, 328, 628, 976
KflI	GGGWCCC	1 cut(s)	920
Kzo9I	GATC	4 cut(s)	150, 414, 571, 1038
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	2 cut(s)	535, 586
Lsp1109I	GCAGC	2 cut(s)	421, 838
LweI	GCATC	3 cut(s)	949, 1105, 1122
MaeI	CTAG	4 cut(s)	305, 425, 1109, 1200
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	4 cut(s)	9, 613, 703, 1193
MalI	GATC	4 cut(s)	152, 416, 573, 1040
MboI	GATC	4 cut(s)	150, 414, 571, 1038
MflI	RGATCY	2 cut(s)	150, 1038
MlyI	GAGTC	4 cut(s)	209, 234, 284, 1135
MmeI	TCCRAC	1 cut(s)	426
MseI	TTAA	7 cut(s)	53, 288, 498, 828, 915, 941, 1211
MslI	CAYNNNNRTG	1 cut(s)	522
MspCI	CTTAAG	2 cut(s)	52, 940
MspR9I	CCNGG	2 cut(s)	752, 930
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	2 cut(s)	752, 930
MwoI	GCNNNNNNNGC	1 cut(s)	350
NdeI	CATATG	2 cut(s)	355, 842
NdeII	GATC	4 cut(s)	150, 414, 571, 1038
NlaIII	CATG	4 cut(s)	215, 328, 628, 976
NlaIV	GGNNCC	3 cut(s)	483, 921, 922
NmuCI	GTSAC	2 cut(s)	613, 1193
NspI	RCATGY	1 cut(s)	976
OliI	CACNNNNGTG	1 cut(s)	522
PciSI	GCTCTTC	1 cut(s)	201
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	3 cut(s)	64, 116, 398
PflMI	CCANNNNNTGG	1 cut(s)	741
PkrI	GCNGC	2 cut(s)	436, 853
PleI	GAGTC	4 cut(s)	208, 234, 283, 1134
PpsI	GAGTC	4 cut(s)	208, 234, 283, 1134
PpuMI	RGGWCCY	1 cut(s)	920
PshBI	ATTAAT	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	920
Psp6I	CCWGG	2 cut(s)	750, 928
PspGI	CCWGG	2 cut(s)	750, 928
PspN4I	GGNNCC	3 cut(s)	483, 921, 922
PspPI	GGNCC	2 cut(s)	482, 920
PspPPI	RGGWCCY	1 cut(s)	920
PstI	CTGCAG	2 cut(s)	439, 1144
PsuI	RGATCY	2 cut(s)	150, 1038
RsaI	GTAC	3 cut(s)	441, 784, 839
RsaNI	GTAC	3 cut(s)	440, 783, 838
RseI	CAYNNNNRTG	1 cut(s)	522
SalI	GTCGAC	1 cut(s)	372
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	7 cut(s)	53, 288, 498, 828, 915, 941, 1211
SatI	GCNGC	2 cut(s)	435, 852
Sau3AI	GATC	4 cut(s)	150, 414, 571, 1038
Sau96I	GGNCC	2 cut(s)	482, 920
ScaI	AGTACT	1 cut(s)	784
SchI	GAGTC	4 cut(s)	209, 234, 284, 1135
ScrFI	CCNGG	2 cut(s)	752, 930
SfaNI	GCATC	3 cut(s)	949, 1105, 1122
SfcI	CTRYAG	3 cut(s)	435, 888, 1140
SinI	GGWCC	2 cut(s)	482, 920
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	2 cut(s)	52, 940
SmoI	CTYRAG	2 cut(s)	52, 940
SspMI	CTAG	4 cut(s)	305, 425, 1109, 1200
StyD4I	CCNGG	2 cut(s)	750, 928
StyI	CCWWGG	1 cut(s)	808
TaaI	ACNGT	2 cut(s)	378, 490
TaiI	ACGT	1 cut(s)	506
TaqI	TCGA	3 cut(s)	373, 579, 1047
TatI	WGTACW	2 cut(s)	782, 837
TfiI	GAWTC	3 cut(s)	64, 116, 398
Tru1I	TTAA	7 cut(s)	53, 288, 498, 828, 915, 941, 1211
Tru9I	TTAA	7 cut(s)	53, 288, 498, 828, 915, 941, 1211
TscAI	CASTG	3 cut(s)	163, 396, 1096
TseFI	GTSAC	2 cut(s)	613, 1193
TseI	GCWGC	2 cut(s)	434, 851
Tsp45I	GTSAC	2 cut(s)	613, 1193
TspDTI	ATGAA	7 cut(s)	17, 89, 228, 290, 341, 613, 1075
TspGWI	ACGGA	1 cut(s)	427
TspRI	CASTG	3 cut(s)	163, 396, 1096
Van91I	CCANNNNNTGG	1 cut(s)	741
Vha464I	CTTAAG	2 cut(s)	52, 940
VpaK11BI	GGWCC	2 cut(s)	482, 920
VspI	ATTAAT	1 cut(s)	288
XapI	RAATTY	3 cut(s)	15, 314, 545
XceI	RCATGY	1 cut(s)	976
XmiI	GTMKAC	1 cut(s)	373
XspI	CTAG	4 cut(s)	305, 425, 1109, 1200
ZrmI	AGTACT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.