Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005190

Physical Location & Seq

Genomic Coordinates Forward (+)

56268631 .. 56271997

Gene Structure 3367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG329900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGAGAAGGTGAAGCTAAGGAATAATGGAGATGTTCCAAACTACTCTGATCCAGACAATTTTACTCTTGAAATTAGACATGGGGGTGTATTTTCTAGTGGAGAGTATGTGGGTGGTTCTGTACGTTGGGCAGACAACTATGACGTTAAATTATTTAGCAAGTGGGACTTGGCAGTAATTGCTAGAAATCTTGGATATGATATTGAGAGAATTCAATACTTTTTCTACCATAAAACTGATGGTTTGGTAGAGATAGATAGTGACATAAGGGTTCTAGAGTGTTCACTGAACCAATCCACTAGAAAAGTTTATGTTGCCTATATTAGTGATTGCACAGTTTTGGATGAAACTCTTGCATTTAATGAAGAATCACAAGTTACTCATCATGTTCAAGCTGACAATGAAGCGGGTGCATATAGGGATGATAAAGCGGATTATGATAGAGGACTTGATGTTAATGTCTTGGCTGATAATGATTTGGACGGAGATTCCAGCAATGATAAAGATGTACTAGATCCTGAAGATGCACAGTGGTTTGTGGATGAAGAATATGTTCAGAGCGATGAAGATATGAGGCAGTTCAAGAGTTGTGTTGTAGATGAAATTGAAGTTGATCATCATGTGGAACCTGGAGAAGAGTCTGATGACTGGGCTATGGACAGCGATGATCTTGAGAGCCTTGATGAGAGTTCAAGTGATGAGGAGGTTAGTGAGCCTGTTAAGTACATGAAGCCTAAGAAAAAGCAACCAAAGTTCAAGCAGTATAGAAGAGATACTGACTTACGGGATCCATACTTCAAACTGGGTCTGGAGTTTCCAACTATGGCACAATGTAGGGAGGCCATAAGAGAATTATCTATCAAATCTGGAAGGCCACTAAGTTTTGACAAAAATGATTCTGACAAGGTTATAGTGAAATGTAAAGGACAATGTAAGGGAAGTTGTCCATTCAAAATATATGCATCTGTGGTTGGGAGTGGTCCTACTGTGAGGGTCAAGACATATGAGCCATTGCATCACTGCGGGAGGTCAAAAAAAATAAAGCATGCTACTTCTACTTGGATAGCAGACAGGTTTGATGAGGTCTTCAGATCCAATCCCAAAATAAAACCTAGAGACTTTATTCGAATGGTGGCTAAGCAGTACGGGATTGATGTTACACTTGATCAGTTTTATAAGGCCAAGGAAAAAGCTAAGAGGAGGATACAAGGTGGCATTCAGGAGCAATATGCGAGAGGACAAGCACTAGAACCTCCTCCTCATGTTCCAGTGAGCGAAAATATGTACAAGGCAAGTGGAATAGCAAGAGGAAGGGCTAGAGGAACCGTAAGTTTAAAAGCCTCTTTGTTTAGTTTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

453

Amino Acids

51.73

Weight (kDa)

5.19

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1-like	PF26130	19 - 93	1.3e-07	PB1-like domain
DBD_Tnp_Mut	PF03108	267 - 325	1e-11	MuDR family transposase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13324
prunus_persica	Prupe.6G164700_v2.0.a1 Prupe.6G182100_v2.0.a1
pyrus_communis	pycom06g06460 pycom15g24790 pycom15g27610
rosa_chinensis	RchiOBHm_Chr5g0080361
rosa_laevigata	RLG00000018542 RLG00000036161 RLG00000036162
rosa_multiflora	Rmu_sc0007310.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288540 Rroxscaffold_4G00288590 Rroxscaffold_4G00323350
rosa_rugosa	Rorug01G0105500 Rorug01G0166300 Rorug02G0169100
rosa_samantha	Rh1AG080500 Rh1AG329900 Rh1BG311500 Rh1DG137800 Rh1DG343300 Rh2AG387800 Rh2CG375100 Rh3DG100300 Rh5BG152800 Rh5DG277500 Rh6AG151900
rosa_wichuraiana	Rw1G029250 Rw5G024840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1176
AciI	CCGC	3 cut(s)	407, 431, 1023
AclWI	GGATC	5 cut(s)	44, 509, 782, 795, 1086
AcsI	RAATTY	1 cut(s)	210
AcuI	CTGAAG	2 cut(s)	540, 1072
AfaI	GTAC	5 cut(s)	123, 510, 725, 1145, 1286
AgsI	TTSAA	9 cut(s)	71, 215, 392, 583, 608, 693, 757, 799, 952
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	3 cut(s)	16, 395, 1193
AluI	AGCT	3 cut(s)	16, 395, 1193
Alw26I	GTCTC	1 cut(s)	1110
AlwI	GGATC	5 cut(s)	44, 509, 782, 795, 1086
AoxI	GGCC	3 cut(s)	840, 872, 1179
ApoI	RAATTY	1 cut(s)	210
Asp700I	GAANNNNTTC	1 cut(s)	552
AspS9I	GGNCC	1 cut(s)	980
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	1126
AvaII	GGWCC	1 cut(s)	980
BamHI	GGATCC	1 cut(s)	787
BbsI	GAAGAC	1 cut(s)	1078
BccI	CCATC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	630
BciVI	GTATCC	1 cut(s)	1197
BclI	TGATCA	2 cut(s)	613, 1165
BcoDI	GTCTC	1 cut(s)	1110
BfaI	CTAG	8 cut(s)	96, 183, 275, 300, 512, 1113, 1247, 1317
BfuI	GTATCC	1 cut(s)	1197
BlpI	GCTNAGC	1 cut(s)	1137
Bme1390I	CCNGG	1 cut(s)	630
Bme18I	GGWCC	1 cut(s)	980
BmgT120I	GGNCC	1 cut(s)	980
BmiI	GGNNCC	3 cut(s)	627, 789, 1324
BmrFI	CCNGG	1 cut(s)	630
BmrI	ACTGGG	2 cut(s)	658, 812
BmsI	GCATC	3 cut(s)	514, 971, 1024
BmuI	ACTGGG	2 cut(s)	658, 812
BpiI	GAAGAC	1 cut(s)	1078
BpmI	CTGGAG	2 cut(s)	651, 830
Bpu10I	CCTNAGC	1 cut(s)	17
Bpu1102I	GCTNAGC	1 cut(s)	1137
Bpu14I	TTCGAA	1 cut(s)	1126
BpuEI	CTTGAG	1 cut(s)	692
BsaJI	CCNNGG	1 cut(s)	1182
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bse1I	ACTGG	3 cut(s)	653, 807, 1268
Bse3DI	GCAATG	2 cut(s)	502, 1010
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	1 cut(s)	1182
BseGI	GGATG	3 cut(s)	349, 427, 547
BseMI	GCAATG	2 cut(s)	502, 1010
BseNI	ACTGG	3 cut(s)	653, 807, 1268
BseRI	GAGGAG	4 cut(s)	716, 1213, 1245, 1248
BshFI	GGCC	3 cut(s)	842, 874, 1181
BslFI	GGGAC	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	1110
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	1215
BsnI	GGCC	3 cut(s)	842, 874, 1181
Bsp119I	TTCGAA	1 cut(s)	1126
Bsp1407I	TGTACA	1 cut(s)	1284
Bsp143I	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
Bsp1720I	GCTNAGC	1 cut(s)	1137
BspACI	CCGC	3 cut(s)	407, 431, 1023
BspANI	GGCC	3 cut(s)	842, 874, 1181
BspLI	GGNNCC	3 cut(s)	627, 789, 1324
BspPI	GGATC	5 cut(s)	44, 509, 782, 795, 1086
BspT104I	TTCGAA	1 cut(s)	1126
BsrDI	GCAATG	2 cut(s)	502, 1010
BsrGI	TGTACA	1 cut(s)	1284
BsrI	ACTGG	3 cut(s)	653, 807, 1268
BssECI	CCNNGG	1 cut(s)	1182
BssMI	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
BssT1I	CCWWGG	1 cut(s)	1182
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	4 cut(s)	337, 531, 988, 1327
Bst6I	CTCTTC	2 cut(s)	630, 763
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	1284
BstBI	TTCGAA	1 cut(s)	1126
BstC8I	GCNNGC	1 cut(s)	1047
BstDEI	CTNAG	5 cut(s)	17, 735, 878, 1137, 1194
BstF5I	GGATG	3 cut(s)	349, 427, 547
BstKTI	GATC	7 cut(s)	52, 517, 616, 670, 790, 1094, 1168
BstMAI	GTCTC	1 cut(s)	1110
BstMBI	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	630
BstNSI	RCATGY	1 cut(s)	1049
BstSCI	CCNGG	1 cut(s)	628
BstV2I	GAAGAC	1 cut(s)	1078
BstX2I	RGATCY	3 cut(s)	514, 787, 1091
BstYI	RGATCY	3 cut(s)	514, 787, 1091
BsuI	GTATCC	1 cut(s)	1197
BsuRI	GGCC	3 cut(s)	842, 874, 1181
BtgZI	GCGATG	2 cut(s)	576, 678
BtsCI	GGATG	3 cut(s)	349, 427, 547
BtsI	GCAGTG	1 cut(s)	1018
BtsIMutI	CAGTG	4 cut(s)	284, 536, 1018, 1275
Cac8I	GCNNGC	1 cut(s)	1047
Cfr13I	GGNCC	1 cut(s)	980
Csp6I	GTAC	5 cut(s)	122, 509, 724, 1144, 1285
CspCI	CAANNNNNGTGG	2 cut(s)	1276, 1311
CviAII	CATG	6 cut(s)	80, 386, 620, 727, 1046, 1262
CviQI	GTAC	5 cut(s)	122, 509, 724, 1144, 1285
DdeI	CTNAG	5 cut(s)	17, 735, 878, 1137, 1194
DpnI	GATC	7 cut(s)	51, 516, 615, 669, 789, 1093, 1167
DpnII	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
DraI	TTTAAA	1 cut(s)	1335
Eam1104I	CTCTTC	2 cut(s)	630, 763
EarI	CTCTTC	2 cut(s)	630, 763
Eco130I	CCWWGG	1 cut(s)	1182
Eco47I	GGWCC	1 cut(s)	980
Eco57I	CTGAAG	2 cut(s)	540, 1072
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	1182
EcoT22I	ATGCAT	1 cut(s)	964
ErhI	CCWWGG	1 cut(s)	1182
FaeI	CATG	6 cut(s)	83, 389, 623, 730, 1049, 1265
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	6 cut(s)	79, 385, 619, 726, 1045, 1261
FauI	CCCGC	2 cut(s)	400, 1016
FauNDI	CATATG	1 cut(s)	1003
FbaI	TGATCA	2 cut(s)	613, 1165
FokI	GGATG	3 cut(s)	356, 434, 554
FspBI	CTAG	8 cut(s)	96, 183, 275, 300, 512, 1113, 1247, 1317
GsuI	CTGGAG	2 cut(s)	651, 830
HaeIII	GGCC	3 cut(s)	842, 874, 1181
Hin1II	CATG	6 cut(s)	83, 389, 623, 730, 1049, 1265
HinfI	GANTC	4 cut(s)	368, 488, 638, 896
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	5 cut(s)	49, 558, 643, 901, 1091
Hpy8I	GTNNAC	1 cut(s)	284
HpyAV	CCTTC	2 cut(s)	864, 1305
HpyCH4III	ACNGT	4 cut(s)	337, 531, 988, 1327
HpyCH4IV	ACGT	2 cut(s)	124, 144
HpyCH4V	TGCA	6 cut(s)	333, 356, 413, 527, 962, 1015
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	5 cut(s)	17, 735, 878, 1137, 1194
HpySE526I	ACGT	2 cut(s)	124, 144
Hsp92II	CATG	6 cut(s)	83, 389, 623, 730, 1049, 1265
Ksp22I	TGATCA	2 cut(s)	613, 1165
Kzo9I	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
LmnI	GCTCC	1 cut(s)	1222
LweI	GCATC	3 cut(s)	514, 971, 1024
MaeI	CTAG	8 cut(s)	96, 183, 275, 300, 512, 1113, 1247, 1317
MaeII	ACGT	2 cut(s)	124, 144
MaeIII	GTNAC	3 cut(s)	260, 376, 1156
MalI	GATC	7 cut(s)	51, 516, 615, 669, 789, 1093, 1167
MboI	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
MboII	GAAGA	7 cut(s)	377, 533, 557, 578, 647, 780, 1078
MflI	RGATCY	3 cut(s)	514, 787, 1091
MluCI	AATT	7 cut(s)	58, 72, 149, 177, 210, 603, 851
MlyI	GAGTC	1 cut(s)	647
MmeI	TCCRAC	1 cut(s)	842
Mph1103I	ATGCAT	1 cut(s)	964
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	6 cut(s)	147, 360, 456, 720, 1334, 1355
MslI	CAYNNNNRTG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	1215
MvaI	CCWGG	1 cut(s)	630
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeI	CATATG	1 cut(s)	1003
NdeII	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
NlaIII	CATG	6 cut(s)	83, 389, 623, 730, 1049, 1265
NlaIV	GGNNCC	3 cut(s)	627, 789, 1324
NmuCI	GTSAC	1 cut(s)	260
NsiI	ATGCAT	1 cut(s)	964
NspI	RCATGY	1 cut(s)	1049
NspV	TTCGAA	1 cut(s)	1126
PaeI	GCATGC	1 cut(s)	1049
PctI	GAATGC	1 cut(s)	1215
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	3 cut(s)	368, 488, 896
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
PsiI	TTATAA	1 cut(s)	1176
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	3 cut(s)	627, 789, 1324
PspPI	GGNCC	1 cut(s)	980
PsuI	RGATCY	3 cut(s)	514, 787, 1091
RsaI	GTAC	5 cut(s)	123, 510, 725, 1145, 1286
RsaNI	GTAC	5 cut(s)	122, 509, 724, 1144, 1285
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	6 cut(s)	147, 360, 456, 720, 1334, 1355
Sau3AI	GATC	7 cut(s)	49, 514, 613, 667, 787, 1091, 1165
Sau96I	GGNCC	1 cut(s)	980
SchI	GAGTC	1 cut(s)	647
ScrFI	CCNGG	1 cut(s)	630
SfaNI	GCATC	3 cut(s)	514, 971, 1024
SfuI	TTCGAA	1 cut(s)	1126
SinI	GGWCC	1 cut(s)	980
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
SphI	GCATGC	1 cut(s)	1049
Sse9I	AATT	7 cut(s)	58, 72, 149, 177, 210, 603, 851
SsiI	CCGC	3 cut(s)	407, 431, 1023
SspMI	CTAG	8 cut(s)	96, 183, 275, 300, 512, 1113, 1247, 1317
StyD4I	CCNGG	1 cut(s)	628
StyI	CCWWGG	1 cut(s)	1182
TaaI	ACNGT	4 cut(s)	337, 531, 988, 1327
TaiI	ACGT	2 cut(s)	127, 147
TaqI	TCGA	1 cut(s)	1126
TasI	AATT	7 cut(s)	58, 72, 149, 177, 210, 603, 851
TatI	WGTACW	3 cut(s)	508, 723, 1284
TfiI	GAWTC	3 cut(s)	368, 488, 896
Tru1I	TTAA	6 cut(s)	147, 360, 456, 720, 1334, 1355
Tru9I	TTAA	6 cut(s)	147, 360, 456, 720, 1334, 1355
TscAI	CASTG	4 cut(s)	291, 536, 1025, 1275
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	7 cut(s)	360, 378, 417, 558, 579, 615, 743
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	4 cut(s)	291, 536, 1025, 1275
VpaK11BI	GGWCC	1 cut(s)	980
XapI	RAATTY	1 cut(s)	210
XbaI	TCTAGA	1 cut(s)	274
XceI	RCATGY	1 cut(s)	1049
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	8 cut(s)	96, 183, 275, 300, 512, 1113, 1247, 1317
Zsp2I	ATGCAT	1 cut(s)	964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.