Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005190

Physical Location & Seq

Genomic Coordinates Reverse (-)

51002382 .. 51006693

Gene Structure 4312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG375100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGAAGCGGTCTTTTCTTTTCTTTTCTGAATATGGAATGGAGAAGGTGAAGCTAAGGAATAATGGAGATGTTCCAAACTACTCTGATCCAGACAATTTTACTCTTGAAATTAGACATGGGGGTGTATTTTCTAGTGGAGAGTATGTGGGTGGTTCCGTATGTTGGGCAGACAACTATGACGTTAACTTATTTAGCAAGTGGGACTTGGCAATAATTGCTAGAAATCTTGGATATGATATTGAGAGAATTCAATACTTTTTCTACCATAAAACTGATGGTTTGGTAGAGATACATAGTGACATAAGGGTTGTAGAGTGTTCACTAAACCAATCCACTAGAAAAGTTTATGTTGCCTATATTAGTGATTGCATAGTTTTGGATGAAACTCTTGCATTTAATGAAGAATCACAAGTTAGTCATCATGTTCAAGCTGACAATGAAGCGGGTGCATATGGGGATGATAAAGTGGATTATGATATAGGACTTGATGTTAATGTCTTGGCAGATAATGATTTGGACGGAGATTCCAGCAATGATGAAGATGTACTAGATCCTGAAGATGCACAGTGGTTTGTGGATGAAGAATATGTTCAGAGCGATGAAGATATGAGGCAGTTCAAGAGTTGTGTTGTAGATGAAATTGAAGTTGATCATCATGTGGAACCTGGAGAGGAGTCTGATGACTGGGCTATGGACAGCGATGATCTTGAGAGCCTTAATGAGAGTTCAAGTGATGAGGAGGTTAATGAGCCTGTTAAGTACATGAAGCCTAAGAAAAAGCAACCAAAGTTCAAGCAGTATAGAAGAGATACTGACTTACGGGATCCATACTTCAAACTGGGTCTGGAGTTTCCAACTATGGCACAATGTAGGGAGGCCATAAGAGAATTGTCTATCAAATCTGGAAGGCCACTAAGTTTTGACAAAAATGATTCTGACAAGGTTATAGTGAAATGTAAAGGACAATGTAAGGGAAGTTGTCCATTCAAAATATATGCATCTATGGTTGGGAATGGTCCTACTGTGAGGGTCAAGACTTATGAGCCATTGCATCACTGCGGGAGGTCAAAAAAAATAAAGCATGCTACTTCTACTTGGATAGAAGACAGGTTTGATGAGGTCTTCAGATCCAATCCCAAAATAAAACCTAGAGACTTTATTCGAATGGTGGCTAAGCAGTACGGGATTGATGTTACACTTGATCAGTTTTATAAGGCCAAGGAAAAAGCTAAGAGGAGGATACAAGGTGGCATTCAGGAGCAATATGCGAGAGGACAAGCACTAGAACCTCCTCCTCATGTTCCAATGAGCAAAAATATATACAAGGCAAGTGGAACAGCAAGAGGAAGGGCTAGAGGAACCGTCAATCGTGCCACTCGTATAACTCAAGTGACAATGCATTCTACAATGAGTACTGAAGCTACTGCATCTCAACCAATTTCTAAAGCTAGAAGTAGTGTATCAAGTACAAGGCATGTTACTCCTGCCAACAGTAACACACATTGGAAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

504

Amino Acids

57.47

Weight (kDa)

5.5

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1-like	PF26130	31 - 106	1.5e-08	PB1-like domain
DBD_Tnp_Mut	PF03108	279 - 336	2.3e-11	MuDR family transposase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13324
prunus_persica	Prupe.6G164700_v2.0.a1 Prupe.6G182100_v2.0.a1
pyrus_communis	pycom06g06460 pycom15g24790 pycom15g27610
rosa_chinensis	RchiOBHm_Chr5g0080361
rosa_laevigata	RLG00000018542 RLG00000036161 RLG00000036162
rosa_multiflora	Rmu_sc0007310.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288540 Rroxscaffold_4G00288590 Rroxscaffold_4G00323350
rosa_rugosa	Rorug01G0105500 Rorug01G0166300 Rorug02G0169100
rosa_samantha	Rh1AG080500 Rh1AG329900 Rh1BG311500 Rh1DG137800 Rh1DG343300 Rh2AG387800 Rh2CG375100 Rh3DG100300 Rh5BG152800 Rh5DG277500 Rh6AG151900
rosa_wichuraiana	Rw1G029250 Rw5G024840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1212
AciI	CCGC	3 cut(s)	7, 443, 1059
AclWI	GGATC	5 cut(s)	80, 545, 818, 831, 1122
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	3 cut(s)	576, 1108, 1437
AfaI	GTAC	5 cut(s)	546, 761, 1181, 1414, 1468
AfiI	CCNNNNNNNGG	1 cut(s)	162
AgsI	TTSAA	9 cut(s)	107, 251, 428, 619, 644, 729, 793, 835, 988
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	6 cut(s)	52, 431, 1229, 1421, 1448, 1510
AluI	AGCT	6 cut(s)	52, 431, 1229, 1421, 1448, 1510
Alw26I	GTCTC	1 cut(s)	1146
AlwI	GGATC	5 cut(s)	80, 545, 818, 831, 1122
AoxI	GGCC	3 cut(s)	876, 908, 1215
ApoI	RAATTY	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	588
AspS9I	GGNCC	1 cut(s)	1016
AsuHPI	GGTGA	1 cut(s)	58
AsuII	TTCGAA	1 cut(s)	1162
AvaII	GGWCC	1 cut(s)	1016
BamHI	GGATCC	1 cut(s)	823
BbsI	GAAGAC	2 cut(s)	1110, 1114
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	666
BciVI	GTATCC	1 cut(s)	1233
BclI	TGATCA	2 cut(s)	649, 1201
BcoDI	GTCTC	1 cut(s)	1146
BfaI	CTAG	8 cut(s)	132, 219, 336, 548, 1149, 1283, 1353, 1449
BfmI	CTRYAG	1 cut(s)	1511
BfuI	GTATCC	1 cut(s)	1233
BlpI	GCTNAGC	1 cut(s)	1173
BmcAI	AGTACT	1 cut(s)	1414
Bme1390I	CCNGG	1 cut(s)	666
Bme18I	GGWCC	1 cut(s)	1016
BmgT120I	GGNCC	1 cut(s)	1016
BmiI	GGNNCC	4 cut(s)	154, 663, 825, 1360
BmrFI	CCNGG	1 cut(s)	666
BmrI	ACTGGG	2 cut(s)	694, 848
BmsI	GCATC	4 cut(s)	550, 1007, 1060, 1436
BmuI	ACTGGG	2 cut(s)	694, 848
BpiI	GAAGAC	2 cut(s)	1110, 1114
BpmI	CTGGAG	2 cut(s)	687, 866
Bpu10I	CCTNAGC	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	1173
Bpu14I	TTCGAA	1 cut(s)	1162
BpuEI	CTTGAG	2 cut(s)	728, 1371
BsaJI	CCNNGG	1 cut(s)	1218
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse1I	ACTGG	2 cut(s)	689, 843
Bse3DI	GCAATG	2 cut(s)	538, 1046
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	1 cut(s)	1218
BseGI	GGATG	3 cut(s)	385, 463, 583
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMI	GCAATG	2 cut(s)	538, 1046
BseNI	ACTGG	2 cut(s)	689, 843
BseRI	GAGGAG	5 cut(s)	686, 752, 1249, 1281, 1284
BshFI	GGCC	3 cut(s)	878, 910, 1217
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	1146
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	2 cut(s)	1251, 1399
BsnI	GGCC	3 cut(s)	878, 910, 1217
Bsp119I	TTCGAA	1 cut(s)	1162
Bsp143I	GATC	7 cut(s)	85, 550, 649, 703, 823, 1127, 1201
Bsp1720I	GCTNAGC	1 cut(s)	1173
BspACI	CCGC	3 cut(s)	7, 443, 1059
BspANI	GGCC	3 cut(s)	878, 910, 1217
BspLI	GGNNCC	4 cut(s)	154, 663, 825, 1360
BspPI	GGATC	5 cut(s)	80, 545, 818, 831, 1122
BspT104I	TTCGAA	1 cut(s)	1162
BsrDI	GCAATG	2 cut(s)	538, 1046
BsrI	ACTGG	2 cut(s)	689, 843
BssECI	CCNNGG	1 cut(s)	1218
BssMI	GATC	7 cut(s)	85, 550, 649, 703, 823, 1127, 1201
BssT1I	CCWWGG	1 cut(s)	1218
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	4 cut(s)	567, 1024, 1363, 1493
Bst6I	CTCTTC	1 cut(s)	799
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstBI	TTCGAA	1 cut(s)	1162
BstC8I	GCNNGC	1 cut(s)	1083
BstDEI	CTNAG	5 cut(s)	53, 771, 914, 1173, 1230
BstF5I	GGATG	3 cut(s)	385, 463, 583
BstKTI	GATC	7 cut(s)	88, 553, 652, 706, 826, 1130, 1204
BstMAI	GTCTC	1 cut(s)	1146
BstMBI	GATC	7 cut(s)	85, 550, 649, 703, 823, 1127, 1201
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	666
BstNSI	RCATGY	2 cut(s)	1085, 1478
BstSCI	CCNGG	1 cut(s)	664
BstSFI	CTRYAG	1 cut(s)	1511
BstV2I	GAAGAC	2 cut(s)	1110, 1114
BstX2I	RGATCY	3 cut(s)	550, 823, 1127
BstYI	RGATCY	3 cut(s)	550, 823, 1127
BsuI	GTATCC	1 cut(s)	1233
BsuRI	GGCC	3 cut(s)	878, 910, 1217
BtgZI	GCGATG	2 cut(s)	612, 714
BtsCI	GGATG	3 cut(s)	385, 463, 583
BtsI	GCAGTG	1 cut(s)	1054
BtsIMutI	CAGTG	2 cut(s)	572, 1054
Cac8I	GCNNGC	1 cut(s)	1083
Cfr13I	GGNCC	1 cut(s)	1016
Csp6I	GTAC	5 cut(s)	545, 760, 1180, 1413, 1467
CspCI	CAANNNNNGTGG	2 cut(s)	1312, 1347
CviAII	CATG	7 cut(s)	116, 422, 656, 763, 1082, 1298, 1475
CviQI	GTAC	5 cut(s)	545, 760, 1180, 1413, 1467
DdeI	CTNAG	5 cut(s)	53, 771, 914, 1173, 1230
DpnI	GATC	7 cut(s)	87, 552, 651, 705, 825, 1129, 1203
DpnII	GATC	7 cut(s)	85, 550, 649, 703, 823, 1127, 1201
Eam1104I	CTCTTC	1 cut(s)	799
EarI	CTCTTC	1 cut(s)	799
Eco130I	CCWWGG	1 cut(s)	1218
Eco47I	GGWCC	1 cut(s)	1016
Eco57I	CTGAAG	3 cut(s)	576, 1108, 1437
EcoRI	GAATTC	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	664
EcoT14I	CCWWGG	1 cut(s)	1218
EcoT22I	ATGCAT	2 cut(s)	1000, 1401
ErhI	CCWWGG	1 cut(s)	1218
FaeI	CATG	7 cut(s)	119, 425, 659, 766, 1085, 1301, 1478
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	7 cut(s)	115, 421, 655, 762, 1081, 1297, 1474
FauI	CCCGC	2 cut(s)	436, 1052
FauNDI	CATATG	1 cut(s)	451
FbaI	TGATCA	2 cut(s)	649, 1201
FokI	GGATG	3 cut(s)	392, 470, 590
FspBI	CTAG	8 cut(s)	132, 219, 336, 548, 1149, 1283, 1353, 1449
GsuI	CTGGAG	2 cut(s)	687, 866
HaeIII	GGCC	3 cut(s)	878, 910, 1217
Hin1II	CATG	7 cut(s)	119, 425, 659, 766, 1085, 1301, 1478
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	4 cut(s)	404, 524, 674, 932
HpaI	GTTAAC	1 cut(s)	184
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	184, 320
Hpy188I	TCNGA	6 cut(s)	28, 85, 594, 679, 937, 1127
Hpy188III	TCNNGA	9 cut(s)	89, 104, 554, 619, 707, 845, 903, 1033, 1256
Hpy8I	GTNNAC	2 cut(s)	184, 320
HpyAV	CCTTC	3 cut(s)	37, 900, 1341
HpyCH4III	ACNGT	4 cut(s)	567, 1024, 1363, 1493
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	8 cut(s)	369, 392, 449, 563, 998, 1051, 1399, 1427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	5 cut(s)	53, 771, 914, 1173, 1230
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	7 cut(s)	119, 425, 659, 766, 1085, 1301, 1478
Ksp22I	TGATCA	2 cut(s)	649, 1201
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	7 cut(s)	85, 550, 649, 703, 823, 1127, 1201
LmnI	GCTCC	1 cut(s)	1258
LweI	GCATC	4 cut(s)	550, 1007, 1060, 1436
MaeI	CTAG	8 cut(s)	132, 219, 336, 548, 1149, 1283, 1353, 1449
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	5 cut(s)	296, 1192, 1390, 1477, 1493
MalI	GATC	7 cut(s)	87, 552, 651, 705, 825, 1129, 1203
MboI	GATC	7 cut(s)	85, 550, 649, 703, 823, 1127, 1201
MboII	GAAGA	8 cut(s)	413, 551, 569, 593, 614, 816, 1114, 1115
MflI	RGATCY	3 cut(s)	550, 823, 1127
MluCI	AATT	7 cut(s)	94, 108, 213, 246, 639, 887, 1437
MlyI	GAGTC	1 cut(s)	683
MmeI	TCCRAC	1 cut(s)	878
Mph1103I	ATGCAT	2 cut(s)	1000, 1401
MroXI	GAANNNNTTC	1 cut(s)	588
MseI	TTAA	6 cut(s)	183, 396, 492, 717, 744, 756
MslI	CAYNNNNRTG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	666
Mva1269I	GAATGC	2 cut(s)	1251, 1399
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	7 cut(s)	85, 550, 649, 703, 823, 1127, 1201
NlaIII	CATG	7 cut(s)	119, 425, 659, 766, 1085, 1301, 1478
NlaIV	GGNNCC	4 cut(s)	154, 663, 825, 1360
NmuCI	GTSAC	2 cut(s)	296, 1390
NsiI	ATGCAT	2 cut(s)	1000, 1401
NspI	RCATGY	2 cut(s)	1085, 1478
NspV	TTCGAA	1 cut(s)	1162
PaeI	GCATGC	1 cut(s)	1085
PcsI	WCGNNNNNNNCGW	1 cut(s)	1375
PctI	GAATGC	2 cut(s)	1251, 1399
PdmI	GAANNNNTTC	1 cut(s)	588
PfeI	GAWTC	3 cut(s)	404, 524, 932
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
PsiI	TTATAA	1 cut(s)	1212
Psp6I	CCWGG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	4 cut(s)	154, 663, 825, 1360
PspPI	GGNCC	1 cut(s)	1016
PsuI	RGATCY	3 cut(s)	550, 823, 1127
RsaI	GTAC	5 cut(s)	546, 761, 1181, 1414, 1468
RsaNI	GTAC	5 cut(s)	545, 760, 1180, 1413, 1467
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	6 cut(s)	183, 396, 492, 717, 744, 756
Sau3AI	GATC	7 cut(s)	85, 550, 649, 703, 823, 1127, 1201
Sau96I	GGNCC	1 cut(s)	1016
ScaI	AGTACT	1 cut(s)	1414
SchI	GAGTC	1 cut(s)	683
ScrFI	CCNGG	1 cut(s)	666
SfaNI	GCATC	4 cut(s)	550, 1007, 1060, 1436
SfcI	CTRYAG	1 cut(s)	1511
SfuI	TTCGAA	1 cut(s)	1162
SinI	GGWCC	1 cut(s)	1016
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	707, 1386
SmoI	CTYRAG	2 cut(s)	707, 1386
SphI	GCATGC	1 cut(s)	1085
Sse9I	AATT	7 cut(s)	94, 108, 213, 246, 639, 887, 1437
SsiI	CCGC	3 cut(s)	7, 443, 1059
SspMI	CTAG	8 cut(s)	132, 219, 336, 548, 1149, 1283, 1353, 1449
StyD4I	CCNGG	1 cut(s)	664
StyI	CCWWGG	1 cut(s)	1218
TaaI	ACNGT	4 cut(s)	567, 1024, 1363, 1493
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	1 cut(s)	1162
TasI	AATT	7 cut(s)	94, 108, 213, 246, 639, 887, 1437
TatI	WGTACW	4 cut(s)	544, 759, 1412, 1466
TfiI	GAWTC	3 cut(s)	404, 524, 932
Tru1I	TTAA	6 cut(s)	183, 396, 492, 717, 744, 756
Tru9I	TTAA	6 cut(s)	183, 396, 492, 717, 744, 756
TscAI	CASTG	2 cut(s)	572, 1061
TseFI	GTSAC	2 cut(s)	296, 1390
Tsp45I	GTSAC	2 cut(s)	296, 1390
TspDTI	ATGAA	9 cut(s)	17, 396, 414, 453, 552, 594, 615, 651, 779
TspGWI	ACGGA	2 cut(s)	145, 534
TspRI	CASTG	2 cut(s)	572, 1061
VpaK11BI	GGWCC	1 cut(s)	1016
XapI	RAATTY	1 cut(s)	246
XceI	RCATGY	2 cut(s)	1085, 1478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	588
XspI	CTAG	8 cut(s)	132, 219, 336, 548, 1149, 1283, 1353, 1449
ZrmI	AGTACT	1 cut(s)	1414
Zsp2I	ATGCAT	2 cut(s)	1000, 1401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.