Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005190

Physical Location & Seq

Genomic Coordinates Reverse (-)

10183704 .. 10184252

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g06460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCCTGATGCACAGCATAGACATTGTATTAGGCACCTTCATAGCAACTTCAGGTCAGATGGTCATAATAGTTTGGCACTAAAACAAGGGCTAGGGGCTGCAGCTAGGGCCACTACTATTCCTACATGGCAAGCAGAGATGGATAAGATCTTGGTGCTATCTGAATGTGCATATGACAGGTTGGTAAAAAGGCCAGCTAAAAATTGGAGCAGGTCGCACTTCTCCATTGGTTCTAAGTGTGATATTTTGCTAAATAATTTGTGTCAGTGCTTCAATTCTAAAATTCTAGAAGCAAGGGACAAGCCTATATTGATAATGCTACAAAGAATTCACAGTTACTTGATGTTGAGAATGGCAAGAAAAAGAGAAGAGAAATGGCATCGAAAGGTTGGACCTAAAAGTGTTAAGATTTTGGAAAAGATTGCTCAAGAGAGAGGATCATGCATTGCTCAAAATGCTGGGGGAGGCAAGTTTCAGGTGACACACATGTATGGGGCGCAATATGCAGTGGATTTAAATAGACACAGAGGAGTCCAATTGACTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MULE SWIM

Protein Analysis

183

Amino Acids

20.81

Weight (kDa)

10.03

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13324
prunus_persica	Prupe.6G164700_v2.0.a1 Prupe.6G182100_v2.0.a1
pyrus_communis	pycom06g06460 pycom15g24790 pycom15g27610
rosa_chinensis	RchiOBHm_Chr5g0080361
rosa_laevigata	RLG00000018542 RLG00000036161 RLG00000036162
rosa_multiflora	Rmu_sc0007310.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288540 Rroxscaffold_4G00288590 Rroxscaffold_4G00323350
rosa_rugosa	Rorug01G0105500 Rorug01G0166300 Rorug02G0169100
rosa_samantha	Rh1AG080500 Rh1AG329900 Rh1BG311500 Rh1DG137800 Rh1DG343300 Rh2AG387800 Rh2CG375100 Rh3DG100300 Rh5BG152800 Rh5DG277500 Rh6AG151900
rosa_wichuraiana	Rw1G029250 Rw5G024840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	445
AcsI	RAATTY	2 cut(s)	282, 327
AcuI	CTGAAG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	2 cut(s)	104, 197
AluI	AGCT	2 cut(s)	104, 197
AlwI	GGATC	1 cut(s)	445
AoxI	GGCC	2 cut(s)	108, 191
ApeKI	GCWGC	2 cut(s)	98, 101
ApoI	RAATTY	2 cut(s)	282, 327
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	2 cut(s)	108, 392
AsuHPI	GGTGA	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	85, 113
BccI	CCATC	2 cut(s)	53, 133
BfaI	CTAG	3 cut(s)	92, 105, 287
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	201
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	2 cut(s)	99, 102
BlsI	GCNGC	2 cut(s)	100, 103
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	108, 392
BmiI	GGNNCC	1 cut(s)	35
BmsI	GCATC	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	444
BseMI	GCAATG	1 cut(s)	444
BseRI	GAGGAG	1 cut(s)	543
BseXI	GCAGC	2 cut(s)	85, 113
BseYI	CCCAGC	1 cut(s)	458
BshFI	GGCC	2 cut(s)	110, 193
BshNI	GGYRCC	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	110, 193
Bsp143I	GATC	2 cut(s)	147, 437
BspANI	GGCC	2 cut(s)	110, 193
BspLI	GGNNCC	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	444
BssMI	GATC	2 cut(s)	147, 437
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	132, 195
BstDEI	CTNAG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	2 cut(s)	150, 440
BstMBI	GATC	2 cut(s)	147, 437
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 455, 503
BstNSI	RCATGY	1 cut(s)	490
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	85, 113
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	110, 193
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	272, 513
BveI	ACCTGC	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	132, 195
CfoI	GCGC	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	108, 392
CviAII	CATG	3 cut(s)	126, 441, 487
CviJI	RGCY	7 cut(s)	91, 98, 104, 110, 193, 197, 304
CviKI_1	RGCY	7 cut(s)	91, 98, 104, 110, 193, 197, 304
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	149, 439
DpnII	GATC	2 cut(s)	147, 437
DraI	TTTAAA	1 cut(s)	516
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	446
FaeI	CATG	3 cut(s)	129, 444, 490
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	3 cut(s)	125, 440, 486
FauNDI	CATATG	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	99, 102
Fsp4HI	GCNGC	2 cut(s)	99, 102
FspBI	CTAG	3 cut(s)	92, 105, 287
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	2 cut(s)	99, 102
GsaI	CCCAGC	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	110, 193
HhaI	GCGC	1 cut(s)	499
Hin1II	CATG	3 cut(s)	129, 444, 490
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HinfI	GANTC	1 cut(s)	531
HphI	GGTGA	1 cut(s)	490
Hpy188I	TCNGA	2 cut(s)	58, 163
Hpy188III	TCNNGA	2 cut(s)	287, 428
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	5 cut(s)	11, 101, 170, 444, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 455, 503
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	129, 444, 490
HspAI	GCGC	1 cut(s)	497
Kzo9I	GATC	2 cut(s)	147, 437
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	7 cut(s)	18, 37, 163, 196, 207, 444, 461
Lsp1109I	GCAGC	2 cut(s)	85, 113
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	3 cut(s)	92, 105, 287
MaeIII	GTNAC	2 cut(s)	335, 478
MalI	GATC	2 cut(s)	149, 439
MboI	GATC	2 cut(s)	147, 437
MboII	GAAGA	1 cut(s)	380
MfeI	CAATTG	1 cut(s)	536
MflI	RGATCY	1 cut(s)	147
MluCI	AATT	6 cut(s)	202, 256, 274, 282, 327, 536
MlyI	GAGTC	1 cut(s)	540
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	3 cut(s)	428, 458, 521
Mph1103I	ATGCAT	1 cut(s)	446
MseI	TTAA	2 cut(s)	405, 515
MslI	CAYNNNNRTG	1 cut(s)	489
MunI	CAATTG	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	107, 455, 503
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	2 cut(s)	147, 437
NlaIII	CATG	3 cut(s)	129, 444, 490
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	478
NsiI	ATGCAT	1 cut(s)	446
NspI	RCATGY	1 cut(s)	490
PciI	ACATGT	1 cut(s)	486
PkrI	GCNGC	2 cut(s)	100, 103
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
PscI	ACATGT	1 cut(s)	486
PspFI	CCCAGC	1 cut(s)	458
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	2 cut(s)	108, 392
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	405, 515
SatI	GCNGC	2 cut(s)	99, 102
Sau3AI	GATC	2 cut(s)	147, 437
Sau96I	GGNCC	2 cut(s)	108, 392
SchI	GAGTC	1 cut(s)	540
SetI	ASST	9 cut(s)	39, 56, 106, 182, 199, 215, 390, 397, 480
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	392
SmiI	ATTTAAAT	1 cut(s)	516
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	6 cut(s)	202, 256, 274, 282, 327, 536
SspMI	CTAG	3 cut(s)	92, 105, 287
SwaI	ATTTAAAT	1 cut(s)	516
TaaI	ACNGT	1 cut(s)	335
TaqI	TCGA	1 cut(s)	382
TasI	AATT	6 cut(s)	202, 256, 274, 282, 327, 536
Tru1I	TTAA	2 cut(s)	405, 515
Tru9I	TTAA	2 cut(s)	405, 515
TscAI	CASTG	2 cut(s)	272, 513
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	2 cut(s)	98, 101
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	272, 513
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	2 cut(s)	282, 327
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XspI	CTAG	3 cut(s)	92, 105, 287
Zsp2I	ATGCAT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.