Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005190

Physical Location & Seq

Genomic Coordinates Forward (+)

16134622 .. 16137156

Gene Structure 2535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G164700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1743 bp

ATGACAGATAAGGATTATTTTGGAGCATTAAAGTTGGTGAAACCGAGCCAGCTGTTTGTGTTATACATAACTAACAATCCAGCACCTAGGCCTCTAAATATTCAATCCCCAGTATTCTCTTCACAAGGTGAAAATGCTGAACATTATGAAGACGAAGACACTGCTCATGGATATGATGGTGATGAAGAAAATGGGCAATATGATTTCGTGGATGTTGAGATACATGAAGAATTTGGTGAGGCAGAGGAAGAAGTTGAGGTAGAAAGTGATGAAGCTGAGCAAGGTGGGGAGGATGAGGAAGAAGATTGTGATTTCATAGATAGAAGAAGATCTGAAGATAAACTTGAAGACTGTCCTTGGTTATTGCATGATGCACATTTTGAGAAATGGTCTACTGTTAAAGTGAAGACATACCATCCAATTCCTACATGTGGCAGATCTCAAAGAACTAGGTTTGCCACTTCACAATTGTTGGCTAAAAGGTTTGATGAGGATCTCAGAACCAATCCTAACATGTCAGTTGCTGAGTTCATGACATTGGTGAGAAAACATTATAGTATAAATGTTACTAGGGACCAATGCTACAAGGCAAAGAATTTGGCAAAGGAGAGCATTCAAGGAAGCATTGAAGAACAATATTCAAAGCTGTGGGATTATTGTGAGAAGCTTAAGAGGCAAAACCCAGGAAGCACAGTTTTAGTAAAGACATCATTGAGGGGAGATGATCTAGTTTTTGAGAGGCTTTATATATGTTTTGCTCAACTGAGGAAGGGGTTTATTGAAGGATGCAGAACCATGGTTGGTTTTGATGGGGCTTTCATCAAAGGACAACATCCAGGACAACTTTTAAGTGCTATTAGGATTGATGCCAACAATGGCACTGGAAATGGGTGGGTTTTTATCATCGAAAAACAAAAAGGACTGGGGCAAGCAATTGAGGCTTTAAAGTCAGATGCTGAACATAGGCATTGTAGGCTATGGTCTGTTGCTAGAAGTACAACACTTCCTCAGTGGGAAGCTGAGATGGAAAATATTATGGAAATGTCTACCCCAGCTCATGCATGGCTTCAGGATAGGCCAGCAATTCATTGGAGCATGCCACATTTTACTACTGGGCCCAAGTGTGATATATTGTTGAACAATTTATGTGAATGCTTCAATTCAGCAATTTTGGAGGCAAGAGATAAACCAATAATCACGATGGTGGAAAGGATAAGAACCTATTTGATGTTGAGAATTATTGAGAAGAATTTGAAAGAGAGTGGCTCATGCATTGCACAGAATGCCGGTGGAAACAGGTTTCAAGTCACCCATATGCTTGGTAGGCAATATGCAGTTGATCTAAATACTCATTCATGCTCTTGTAGAAAATTGGATCTCTGTGGCATCCTGTGTTGCCATGTCATGGCTGCTATATCAAGGCAACAGAGGAGCCCAATGACTTATGTGAATGAGGTGCATAGGCCAATTAAACCCCCACTGTCTCACAAACAAAGTGGTAGGCCAAAGAAGGCAAGGACTAGACCTGTTGATGAGATCCCAAAGGGTGCCACTAAGCTTAGGAGATATGGAATTGTAATCCATTGCTCAGTCTGTGGAGGAGAAGGCCATAATGCTACTAATTGTGGAAGGGCAGATGGTAATATGGGAAGAGGCAGAGGGAGAGGGAGAGGGAGAGGGAGAGGAAGAGGAAGAGGAAAAGGAAGAGGAACTGGCTCAGTCCATCAATCTGAAGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

581

Amino Acids

65.68

Weight (kDa)

6.73

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13324
prunus_persica	Prupe.6G164700_v2.0.a1 Prupe.6G182100_v2.0.a1
pyrus_communis	pycom06g06460 pycom15g24790 pycom15g27610
rosa_chinensis	RchiOBHm_Chr5g0080361
rosa_laevigata	RLG00000018542 RLG00000036161 RLG00000036162
rosa_multiflora	Rmu_sc0007310.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288540 Rroxscaffold_4G00288590 Rroxscaffold_4G00323350
rosa_rugosa	Rorug01G0105500 Rorug01G0166300 Rorug02G0169100
rosa_samantha	Rh1AG080500 Rh1AG329900 Rh1BG311500 Rh1DG137800 Rh1DG343300 Rh2AG387800 Rh2CG375100 Rh3DG100300 Rh5BG152800 Rh5DG277500 Rh6AG151900
rosa_wichuraiana	Rw1G029250 Rw5G024840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1547
AccB7I	CCANNNNNTGG	1 cut(s)	1405
AccI	GTMKAC	2 cut(s)	392, 1046
AclWI	GGATC	3 cut(s)	501, 1383, 1531
AcsI	RAATTY	3 cut(s)	230, 595, 1249
AcuI	CTGAAG	2 cut(s)	354, 1052
AdeI	CACNNNGTG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	997
AfiI	CCNNNNNNNGG	2 cut(s)	431, 1405
AflII	CTTAAG	1 cut(s)	668
AflIII	ACRYGT	2 cut(s)	428, 513
AjnI	CCWGG	2 cut(s)	682, 835
AleI	CACNNNNGTG	1 cut(s)	1202
AluBI	AGCT	7 cut(s)	52, 275, 646, 667, 1019, 1055, 1558
AluI	AGCT	7 cut(s)	52, 275, 646, 667, 1019, 1055, 1558
Alw26I	GTCTC	1 cut(s)	1488
AlwI	GGATC	3 cut(s)	501, 1383, 1531
AlwNI	CAGNNNCTG	2 cut(s)	524, 956
AoxI	GGCC	6 cut(s)	89, 1076, 1115, 1463, 1502, 1606
ApaI	GGGCCC	1 cut(s)	1119
ApeKI	GCWGC	1 cut(s)	1409
ApoI	RAATTY	3 cut(s)	230, 595, 1249
AspA2I	CCTAGG	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	574, 1115, 1116
AsuHPI	GGTGA	6 cut(s)	49, 140, 191, 248, 553, 1300
AvaII	GGWCC	1 cut(s)	574
AvrII	CCTAGG	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	1119
BanI	GGYRCC	1 cut(s)	1547
BanII	GRGCYC	2 cut(s)	1119, 1436
BbsI	GAAGAC	4 cut(s)	156, 162, 354, 413
BbvI	GCAGC	1 cut(s)	1396
BccI	CCATC	7 cut(s)	170, 423, 803, 1018, 1195, 1631, 1731
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciT130I	CCWGG	2 cut(s)	684, 837
BcoDI	GTCTC	1 cut(s)	1488
BfaI	CTAG	6 cut(s)	87, 450, 570, 728, 990, 1521
BfrI	CTTAAG	1 cut(s)	668
BglII	AGATCT	2 cut(s)	329, 437
BisI	GCNGC	1 cut(s)	1410
BlnI	CCTAGG	1 cut(s)	86
BlpI	GCTNAGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	1411
Bme1390I	CCNGG	2 cut(s)	684, 837
Bme18I	GGWCC	1 cut(s)	574
BmgT120I	GGNCC	3 cut(s)	574, 1115, 1116
BmiI	GGNNCC	4 cut(s)	575, 1117, 1433, 1549
BmrFI	CCNGG	2 cut(s)	684, 837
BmrI	ACTGGG	3 cut(s)	104, 932, 1122
BmsI	GCATC	5 cut(s)	361, 776, 856, 943, 1395
BmuI	ACTGGG	3 cut(s)	104, 932, 1122
BpiI	GAAGAC	4 cut(s)	156, 162, 354, 413
BplI	GAGNNNNNCTC	2 cut(s)	1250, 1282
Bpu10I	CCTNAGC	1 cut(s)	1559
Bpu1102I	GCTNAGC	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	4 cut(s)	86, 356, 682, 795
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 1405
Bse118I	RCCGGY	1 cut(s)	1286
Bse1I	ACTGG	5 cut(s)	110, 886, 927, 1117, 1717
Bse3DI	GCAATG	2 cut(s)	1272, 1582
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	684, 837
BseDI	CCNNGG	4 cut(s)	86, 356, 682, 795
BseGI	GGATG	6 cut(s)	217, 298, 415, 791, 832, 1386
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	2 cut(s)	431, 1405
BseMI	GCAATG	2 cut(s)	1272, 1582
BseMII	CTCAG	8 cut(s)	267, 511, 516, 755, 1011, 1022, 1602, 1731
BseNI	ACTGG	5 cut(s)	110, 886, 927, 1117, 1717
BseRI	GAGGAG	2 cut(s)	1444, 1614
BseSI	GKGCMC	1 cut(s)	1119
BseXI	GCAGC	1 cut(s)	1396
BseYI	CCCAGC	1 cut(s)	1051
BshFI	GGCC	6 cut(s)	91, 1078, 1117, 1465, 1504, 1608
BshNI	GGYRCC	1 cut(s)	1547
BsiSI	CCGG	1 cut(s)	1287
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	2 cut(s)	431, 1405
BsmAI	GTCTC	1 cut(s)	1488
BsmFI	GGGAC	1 cut(s)	587
BsmI	GAATGC	3 cut(s)	612, 1157, 1288
BsnI	GGCC	6 cut(s)	91, 1078, 1117, 1465, 1504, 1608
Bsp120I	GGGCCC	1 cut(s)	1115
Bsp1286I	GDGCHC	2 cut(s)	1119, 1436
Bsp143I	GATC	7 cut(s)	329, 437, 493, 724, 1339, 1375, 1536
Bsp1720I	GCTNAGC	1 cut(s)	276
Bsp19I	CCATGG	1 cut(s)	795
BspANI	GGCC	6 cut(s)	91, 1078, 1117, 1465, 1504, 1608
BspCNI	CTCAG	8 cut(s)	268, 510, 517, 756, 1012, 1021, 1601, 1730
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	4 cut(s)	575, 1117, 1433, 1549
BspPI	GGATC	3 cut(s)	501, 1383, 1531
BspT107I	GGYRCC	1 cut(s)	1547
BspTI	CTTAAG	1 cut(s)	668
BsrDI	GCAATG	2 cut(s)	1272, 1582
BsrFI	RCCGGY	1 cut(s)	1286
BsrI	ACTGG	5 cut(s)	110, 886, 927, 1117, 1717
BssAI	RCCGGY	1 cut(s)	1286
BssECI	CCNNGG	4 cut(s)	86, 356, 682, 795
BssMI	GATC	7 cut(s)	329, 437, 493, 724, 1339, 1375, 1536
BssT1I	CCWWGG	3 cut(s)	86, 356, 795
Bst2UI	CCWGG	2 cut(s)	684, 837
Bst4CI	ACNGT	4 cut(s)	353, 397, 694, 1482
Bst6I	CTCTTC	6 cut(s)	124, 1645, 1681, 1687, 1699, 1728
BstAFI	CTTAAG	1 cut(s)	668
BstAPI	GCANNNNNTGC	1 cut(s)	1283
BstC8I	GCNNGC	4 cut(s)	50, 930, 1080, 1097
BstDSI	CCRYGG	1 cut(s)	795
BstF5I	GGATG	6 cut(s)	217, 298, 415, 791, 832, 1386
BstKTI	GATC	7 cut(s)	332, 440, 496, 727, 1342, 1378, 1539
BstMAI	GTCTC	1 cut(s)	1488
BstMBI	GATC	7 cut(s)	329, 437, 493, 724, 1339, 1375, 1536
BstMWI	GCNNNNNNNGC	5 cut(s)	673, 938, 973, 1283, 1324
BstNI	CCWGG	2 cut(s)	684, 837
BstNSI	RCATGY	3 cut(s)	432, 517, 1099
BstSCI	CCNGG	2 cut(s)	682, 835
BstSLI	GKGCMC	1 cut(s)	1119
BstV1I	GCAGC	1 cut(s)	1396
BstV2I	GAAGAC	4 cut(s)	156, 162, 354, 413
BstX2I	RGATCY	5 cut(s)	329, 437, 493, 1375, 1536
BstXI	CCANNNNNNTGG	1 cut(s)	1319
BstYI	RGATCY	5 cut(s)	329, 437, 493, 1375, 1536
BsuRI	GGCC	6 cut(s)	91, 1078, 1117, 1465, 1504, 1608
BtgI	CCRYGG	1 cut(s)	795
BtsCI	GGATG	6 cut(s)	217, 298, 415, 791, 832, 1386
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	4 cut(s)	159, 879, 1016, 1478
Cac8I	GCNNGC	4 cut(s)	50, 930, 1080, 1097
CaiI	CAGNNNCTG	2 cut(s)	524, 956
CciI	TCATGA	1 cut(s)	531
Cfr10I	RCCGGY	1 cut(s)	1286
Cfr13I	GGNCC	3 cut(s)	574, 1115, 1116
Csp6I	GTAC	1 cut(s)	996
CspCI	CAANNNNNGTGG	2 cut(s)	1477, 1512
CviQI	GTAC	1 cut(s)	996
DpnI	GATC	7 cut(s)	331, 439, 495, 726, 1341, 1377, 1538
DpnII	GATC	7 cut(s)	329, 437, 493, 724, 1339, 1375, 1536
DraI	TTTAAA	1 cut(s)	945
DraIII	CACNNNGTG	1 cut(s)	128
Eam1104I	CTCTTC	6 cut(s)	124, 1645, 1681, 1687, 1699, 1728
EarI	CTCTTC	6 cut(s)	124, 1645, 1681, 1687, 1699, 1728
Eco130I	CCWWGG	3 cut(s)	86, 356, 795
Eco147I	AGGCCT	1 cut(s)	91
Eco24I	GRGCYC	2 cut(s)	1119, 1436
Eco47I	GGWCC	1 cut(s)	574
Eco57I	CTGAAG	2 cut(s)	354, 1052
EcoRII	CCWGG	2 cut(s)	682, 835
EcoT14I	CCWWGG	3 cut(s)	86, 356, 795
EcoT22I	ATGCAT	2 cut(s)	1063, 1274
EcoT38I	GRGCYC	2 cut(s)	1119, 1436
ErhI	CCWWGG	3 cut(s)	86, 356, 795
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	1 cut(s)	587
FauNDI	CATATG	1 cut(s)	1314
FblI	GTMKAC	2 cut(s)	392, 1046
Fnu4HI	GCNGC	1 cut(s)	1410
FokI	GGATG	6 cut(s)	224, 305, 402, 798, 819, 1373
FriOI	GRGCYC	2 cut(s)	1119, 1436
Fsp4HI	GCNGC	1 cut(s)	1410
FspBI	CTAG	6 cut(s)	87, 450, 570, 728, 990, 1521
GluI	GCNGC	1 cut(s)	1410
GsaI	CCCAGC	1 cut(s)	1055
HaeIII	GGCC	6 cut(s)	91, 1078, 1117, 1465, 1504, 1608
HapII	CCGG	1 cut(s)	1287
HindIII	AAGCTT	2 cut(s)	665, 1556
HpaII	CCGG	1 cut(s)	1287
HphI	GGTGA	6 cut(s)	49, 140, 191, 248, 553, 1300
Hpy166II	GTNNAC	2 cut(s)	393, 1047
Hpy188I	TCNGA	4 cut(s)	334, 500, 952, 1732
Hpy188III	TCNNGA	3 cut(s)	532, 1070, 1198
Hpy8I	GTNNAC	2 cut(s)	393, 1047
HpyAV	CCTTC	5 cut(s)	763, 776, 1504, 1598, 1623
HpyCH4III	ACNGT	4 cut(s)	353, 397, 694, 1482
HpyCH4V	TGCA	8 cut(s)	367, 374, 789, 1061, 1272, 1277, 1334, 1459
HpyF10VI	GCNNNNNNNGC	5 cut(s)	673, 938, 973, 1283, 1324
Kzo9I	GATC	7 cut(s)	329, 437, 493, 724, 1339, 1375, 1536
LmnI	GCTCC	3 cut(s)	23, 1092, 1431
Lsp1109I	GCAGC	1 cut(s)	1396
LweI	GCATC	5 cut(s)	361, 776, 856, 943, 1395
MaeI	CTAG	6 cut(s)	87, 450, 570, 728, 990, 1521
MaeIII	GTNAC	2 cut(s)	565, 1306
MalI	GATC	7 cut(s)	331, 439, 495, 726, 1341, 1377, 1538
MboI	GATC	7 cut(s)	329, 437, 493, 724, 1339, 1375, 1536
MfeI	CAATTG	2 cut(s)	467, 933
MflI	RGATCY	5 cut(s)	329, 437, 493, 1375, 1536
MhlI	GDGCHC	2 cut(s)	1119, 1436
Mph1103I	ATGCAT	2 cut(s)	1063, 1274
MseI	TTAA	6 cut(s)	29, 399, 669, 848, 944, 1470
MslI	CAYNNNNRTG	3 cut(s)	171, 1202, 1313
MspA1I	CMGCKG	1 cut(s)	52
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	1 cut(s)	1287
MspR9I	CCNGG	2 cut(s)	684, 837
MunI	CAATTG	2 cut(s)	467, 933
Mva1269I	GAATGC	3 cut(s)	612, 1157, 1288
MvaI	CCWGG	2 cut(s)	684, 837
MwoI	GCNNNNNNNGC	5 cut(s)	673, 938, 973, 1283, 1324
NcoI	CCATGG	1 cut(s)	795
NdeI	CATATG	1 cut(s)	1314
NdeII	GATC	7 cut(s)	329, 437, 493, 724, 1339, 1375, 1536
NlaIV	GGNNCC	4 cut(s)	575, 1117, 1433, 1549
NmuCI	GTSAC	1 cut(s)	1306
NsiI	ATGCAT	2 cut(s)	1063, 1274
NspI	RCATGY	3 cut(s)	432, 517, 1099
OliI	CACNNNNGTG	1 cut(s)	1202
PaeI	GCATGC	1 cut(s)	1099
PagI	TCATGA	1 cut(s)	531
PceI	AGGCCT	1 cut(s)	91
PciI	ACATGT	2 cut(s)	428, 513
PctI	GAATGC	3 cut(s)	612, 1157, 1288
PflMI	CCANNNNNTGG	1 cut(s)	1405
PfoI	TCCNGGA	1 cut(s)	835
PkrI	GCNGC	1 cut(s)	1411
PscI	ACATGT	2 cut(s)	428, 513
Psp6I	CCWGG	2 cut(s)	682, 835
PspFI	CCCAGC	1 cut(s)	1051
PspGI	CCWGG	2 cut(s)	682, 835
PspN4I	GGNNCC	4 cut(s)	575, 1117, 1433, 1549
PspOMI	GGGCCC	1 cut(s)	1115
PspPI	GGNCC	3 cut(s)	574, 1115, 1116
PstNI	CAGNNNCTG	2 cut(s)	524, 956
PsuI	RGATCY	5 cut(s)	329, 437, 493, 1375, 1536
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	997
RsaNI	GTAC	1 cut(s)	996
RseI	CAYNNNNRTG	3 cut(s)	171, 1202, 1313
SaqAI	TTAA	6 cut(s)	29, 399, 669, 848, 944, 1470
SatI	GCNGC	1 cut(s)	1410
Sau3AI	GATC	7 cut(s)	329, 437, 493, 724, 1339, 1375, 1536
Sau96I	GGNCC	3 cut(s)	574, 1115, 1116
ScrFI	CCNGG	2 cut(s)	684, 837
SduI	GDGCHC	2 cut(s)	1119, 1436
SfaNI	GCATC	5 cut(s)	361, 776, 856, 943, 1395
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	3 cut(s)	171, 1202, 1313
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SphI	GCATGC	1 cut(s)	1099
SseBI	AGGCCT	1 cut(s)	91
SspI	AATATT	3 cut(s)	100, 638, 1033
SspMI	CTAG	6 cut(s)	87, 450, 570, 728, 990, 1521
StuI	AGGCCT	1 cut(s)	91
StyD4I	CCNGG	2 cut(s)	682, 835
StyI	CCWWGG	3 cut(s)	86, 356, 795
TaaI	ACNGT	4 cut(s)	353, 397, 694, 1482
TaqI	TCGA	1 cut(s)	906
TatI	WGTACW	1 cut(s)	995
Tru1I	TTAA	6 cut(s)	29, 399, 669, 848, 944, 1470
Tru9I	TTAA	6 cut(s)	29, 399, 669, 848, 944, 1470
TscAI	CASTG	4 cut(s)	166, 886, 1016, 1485
TseFI	GTSAC	1 cut(s)	1306
TseI	GCWGC	1 cut(s)	1409
Tsp45I	GTSAC	1 cut(s)	1306
TspDTI	ATGAA	9 cut(s)	162, 198, 240, 285, 304, 520, 808, 1076, 1344
TspRI	CASTG	4 cut(s)	166, 886, 1016, 1485
Van91I	CCANNNNNTGG	1 cut(s)	1405
Vha464I	CTTAAG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	3 cut(s)	230, 595, 1249
XceI	RCATGY	3 cut(s)	432, 517, 1099
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1059, 1086
XmaJI	CCTAGG	1 cut(s)	86
XmiI	GTMKAC	2 cut(s)	392, 1046
XspI	CTAG	6 cut(s)	87, 450, 570, 728, 990, 1521
Zsp2I	ATGCAT	2 cut(s)	1063, 1274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.