Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005190

Physical Location & Seq

Genomic Coordinates Reverse (-)

9303470 .. 9304820

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCGATCTTGGCAGATAATGATTTGGACGAAGATTCCAGCAATGATAAAGATGCACTGGATCCTGAACATGCAGAGTGGTTTGTGGATGAAGAATATGTTCAGAGTGATGAAGATATGAGGCAGTTCAAGAGTTGTGTTAGAGGACAAGCACTAGAACCTCCTCCTCATGTTCCAGCGAGCAAAAATATGTACAAGGCAAGTGAAAGAGCAAGAGGAAGGGCTAGAGGCAGCGTCTCAGATCAGATTTACGCATCAGGCATGGTCCAGAAATCTCCACAGCACGAGACCCGGTTCCTCGATCCGACGACCCGCGAAAGCAACTCGACCGGTACTTCTTCGTCCGGTGACGACACGGTGGAAAACTGGTGTGGTTTGGTTCGTCTTCTCGCAGTGGTTTCACTTCCAGCCTCGGTTGGTCCAGTCGCTGGGTGTAGAGGGAGAATCGAAGCTAACAAGTTTTATGTTTTTCCGACGTTTCTTCGACGTCTGCCGGTGGCTCCGGCGACCGTTTTTCATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.19

Weight (kDa)

5.09

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13324
prunus_persica	Prupe.6G164700_v2.0.a1 Prupe.6G182100_v2.0.a1
pyrus_communis	pycom06g06460 pycom15g24790 pycom15g27610
rosa_chinensis	RchiOBHm_Chr5g0080361
rosa_laevigata	RLG00000018542 RLG00000036161 RLG00000036162
rosa_multiflora	Rmu_sc0007310.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288540 Rroxscaffold_4G00288590 Rroxscaffold_4G00323350
rosa_rugosa	Rorug01G0105500 Rorug01G0166300 Rorug02G0169100
rosa_samantha	Rh1AG080500 Rh1AG329900 Rh1BG311500 Rh1DG137800 Rh1DG343300 Rh2AG387800 Rh2CG375100 Rh3DG100300 Rh5BG152800 Rh5DG277500 Rh6AG151900
rosa_wichuraiana	Rw1G029250 Rw5G024840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	490
AccB7I	CCANNNNNTGG	1 cut(s)	428
AccII	CGCG	1 cut(s)	315
AciI	CCGC	1 cut(s)	313
AclWI	GGATC	3 cut(s)	56, 69, 296
AcyI	GRCGYC	1 cut(s)	487
AfaI	GTAC	2 cut(s)	194, 334
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	1 cut(s)	452
AluI	AGCT	1 cut(s)	452
Alw26I	GTCTC	2 cut(s)	241, 281
AlwI	GGATC	3 cut(s)	56, 69, 296
AlwNI	CAGNNNCTG	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	231
AsiGI	ACCGGT	1 cut(s)	329
Asp700I	GAANNNNTTC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	265, 419
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	265, 419
BamHI	GGATCC	1 cut(s)	61
BauI	CACGAG	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	241, 281
BfaI	CTAG	2 cut(s)	155, 225
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	292
Bme18I	GGWCC	2 cut(s)	265, 419
BmgT120I	GGNCC	2 cut(s)	265, 419
BmiI	GGNNCC	3 cut(s)	63, 296, 501
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	43, 263
BpiI	GAAGAC	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	487
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	411
BsaWI	WCCGGW	2 cut(s)	329, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse118I	RCCGGY	2 cut(s)	329, 493
Bse1I	ACTGG	3 cut(s)	63, 371, 422
Bse3DI	GCAATG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	3 cut(s)	63, 371, 422
BseRI	GAGGAG	2 cut(s)	153, 156
BseXI	GCAGC	1 cut(s)	243
BseYI	CCCAGC	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	315
Bsh1285I	CGRYCG	2 cut(s)	330, 510
BshTI	ACCGGT	1 cut(s)	329
BsiEI	CGRYCG	2 cut(s)	330, 510
BsiSI	CCGG	5 cut(s)	292, 330, 345, 494, 503
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	2 cut(s)	241, 281
BsmBI	CGTCTC	1 cut(s)	241
Bso31I	GGTCTC	1 cut(s)	281
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	4 cut(s)	6, 61, 241, 301
BspACI	CCGC	1 cut(s)	313
BspCNI	CTCAG	1 cut(s)	251
BspFNI	CGCG	1 cut(s)	315
BspLI	GGNNCC	3 cut(s)	63, 296, 501
BspPI	GGATC	3 cut(s)	56, 69, 296
BspTNI	GGTCTC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	2 cut(s)	329, 493
BsrGI	TGTACA	1 cut(s)	192
BsrI	ACTGG	3 cut(s)	63, 371, 422
BssAI	RCCGGY	2 cut(s)	329, 493
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	4 cut(s)	6, 61, 241, 301
BssNI	GRCGYC	1 cut(s)	487
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	358, 511
BstACI	GRCGYC	1 cut(s)	487
BstAUI	TGTACA	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	94
BstFNI	CGCG	1 cut(s)	315
BstKTI	GATC	4 cut(s)	9, 64, 244, 304
BstMAI	GTCTC	2 cut(s)	241, 281
BstMBI	GATC	4 cut(s)	6, 61, 241, 301
BstMCI	CGRYCG	2 cut(s)	330, 510
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	290
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	243
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	56, 399
Cac8I	GCNNGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	428
Cfr10I	RCCGGY	2 cut(s)	329, 493
Cfr13I	GGNCC	2 cut(s)	265, 419
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	193, 333
CspAI	ACCGGT	1 cut(s)	329
CviAII	CATG	5 cut(s)	71, 170, 262, 518, 522
CviJI	RGCY	4 cut(s)	224, 410, 452, 500
CviKI_1	RGCY	4 cut(s)	224, 410, 452, 500
CviQI	GTAC	2 cut(s)	193, 333
DdeI	CTNAG	1 cut(s)	238
DpnI	GATC	4 cut(s)	8, 63, 243, 303
DpnII	GATC	4 cut(s)	6, 61, 241, 301
Eco31I	GGTCTC	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	265, 419
EcoT22I	ATGCAT	1 cut(s)	523
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	5 cut(s)	74, 173, 265, 521, 525
FaiI	YATR	9 cut(s)	72, 99, 119, 171, 191, 263, 465, 519, 523
FatI	CATG	5 cut(s)	70, 169, 261, 517, 521
FauI	CCCGC	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	232
FspBI	CTAG	2 cut(s)	155, 225
GluI	GCNGC	1 cut(s)	232
GsaI	CCCAGC	1 cut(s)	432
HapII	CCGG	5 cut(s)	292, 330, 345, 494, 503
HgaI	GACGC	1 cut(s)	223
Hin1I	GRCGYC	1 cut(s)	487
Hin1II	CATG	5 cut(s)	74, 173, 265, 521, 525
HinfI	GANTC	2 cut(s)	35, 444
HpaII	CCGG	5 cut(s)	292, 330, 345, 494, 503
HphI	GGTGA	1 cut(s)	359
Hpy188I	TCNGA	5 cut(s)	105, 241, 246, 306, 474
Hpy188III	TCNNGA	3 cut(s)	65, 130, 268
Hpy99I	CGWCG	3 cut(s)	310, 478, 489
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	2 cut(s)	358, 511
HpyCH4IV	ACGT	2 cut(s)	476, 487
HpyCH4V	TGCA	3 cut(s)	56, 74, 521
HpyF3I	CTNAG	1 cut(s)	238
HpySE526I	ACGT	2 cut(s)	476, 487
Hsp92I	GRCGYC	1 cut(s)	487
Hsp92II	CATG	5 cut(s)	74, 173, 265, 521, 525
Kzo9I	GATC	4 cut(s)	6, 61, 241, 301
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	2 cut(s)	43, 263
MaeI	CTAG	2 cut(s)	155, 225
MaeII	ACGT	2 cut(s)	476, 487
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	4 cut(s)	8, 63, 243, 303
MboI	GATC	4 cut(s)	6, 61, 241, 301
MboII	GAAGA	6 cut(s)	44, 104, 125, 330, 377, 473
MflI	RGATCY	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	329, 497
Mph1103I	ATGCAT	1 cut(s)	523
MroXI	GAANNNNTTC	1 cut(s)	99
MspI	CCGG	5 cut(s)	292, 330, 345, 494, 503
MspR9I	CCNGG	1 cut(s)	292
MvnI	CGCG	1 cut(s)	315
NciI	CCSGG	1 cut(s)	292
NdeII	GATC	4 cut(s)	6, 61, 241, 301
NlaIII	CATG	5 cut(s)	74, 173, 265, 521, 525
NlaIV	GGNNCC	3 cut(s)	63, 296, 501
NmuCI	GTSAC	1 cut(s)	347
NsiI	ATGCAT	1 cut(s)	523
NspI	RCATGY	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	35, 444
PflMI	CCANNNNNTGG	1 cut(s)	428
PinAI	ACCGGT	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	428
PspN4I	GGNNCC	3 cut(s)	63, 296, 501
PspPI	GGNCC	2 cut(s)	265, 419
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	2 cut(s)	194, 334
RsaNI	GTAC	2 cut(s)	193, 333
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	4 cut(s)	6, 61, 241, 301
Sau96I	GGNCC	2 cut(s)	265, 419
ScrFI	CCNGG	1 cut(s)	292
SetI	ASST	4 cut(s)	163, 454, 479, 490
SfaNI	GCATC	2 cut(s)	43, 263
SinI	GGWCC	2 cut(s)	265, 419
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	2 cut(s)	155, 225
StyD4I	CCNGG	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	358, 511
TaiI	ACGT	2 cut(s)	479, 490
TaqI	TCGA	5 cut(s)	5, 300, 326, 447, 484
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	35, 444
TscAI	CASTG	2 cut(s)	63, 399
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	3 cut(s)	105, 126, 506
TspRI	CASTG	2 cut(s)	63, 399
Van91I	CCANNNNNTGG	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	265, 419
XceI	RCATGY	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	2 cut(s)	155, 225
ZraI	GACGTC	1 cut(s)	488
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.