Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005190

Physical Location & Seq

Genomic Coordinates Forward (+)

18883004 .. 18884853

Gene Structure 1850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G182100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGAGTTTACTAACATGGAACAATATAGGGAGACCATAAGATTCTATGCAGTTTCAAGTGCTAGGCCACTGAGATTGGTCAAGAATGACCCTCACAGGGTTAGGATGGACTTGAGAGATAATCTTAATATGTCTGTGTCGGATTTCATGAAGATCGTGAGGAAGAATTATGGCATAGATATCACTACAAACCAATTTTATAAAGCCAAGAGCATAGCTAAAGAGTTAATACATGGAAGTATTGAAGAACAATACACAAAATTGTGTGATTATTATGAAGAGTTGAAGGCACACAATCCAGGTAGCACTGTATTAACCAAGACTAATTTGCGAGGGGACAACTCAGTATTTAAAAGAATATATATATATATATATATATTTGGTGGATTGAAGAAGAGCTTTATTGCAAGATGCAGGCCAACTGTGGGTTTTGATGGTTGTCATGTGATGGGAACTCATCCAGGACAGATTTTATATGCAGTTGGTATTGATGCGAATAATGGGATGTACCCTGTCGCATTTGCTGTGATTGAACAAAAGGGTTTGGGGCAAGCCATTAGGGATTTGATGCCCACTGCTGAACTCATGCATTGTGTTAGGCACCTTCACAATAATTTCAAGATTGCTGGTCACAATGGACTAGCATTGAAGCAAAGATTGTGGGCAGCTACTAGATCAACTACATTACCCAGATTTGAAGTTGAGATGGAGAAGATGATGAAGAAGATGCCATCAAATCATTGGAGTATGTCACACTTCACAACTCATTCTAAGTGTGATATGCTTCTTAACAACTTGTCAAGGGATAAGCTAATTCTTACACTACTAGAGAGAATTCGAAGTTATTTGATGCTAAGAATGGCTAGACTTAGAGAAATTGTTTGGGCACATGATGTTGGTCCTAGGATTTTTGGAATTGTTGAGAAGCTAACAACTAAGAGCACTCAATGCATAGCATCTTATGCTGGTGGGGGGAAATATCAAGTTAATAACATCAATGATAGGATGTATGTAGTGGATTTGGAGAGGCACACGTGCACTTGCAGAAAGTGGGACTTATGTAGAATCCCTTGTTTACATTCTATGGTTGTAATTGCCAAAACAGAGAAAAGCCCTTATGACTTTGTGCATTCACTTTACAAAAGAGCTGCATATGAGAGGGCTTATGAGAGTTATATATCTCCAATACCTAGTCAAGAATACTGGAGAAAAACATGGCATATACCCATCAAGCCACCTATTTACCACAAACAACCAGGAAGGCCTAGAACAAGTAGGCAAAAAGAGCTTGATGAGATACCAAAAAATGCAACAAAGCTGAGGAGATATGAGATTGTTATTTATTGTAAAACTTGTGGAGGTGAAGGTCACAATTCTACAAGTTGTGGCAACAATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

467

Amino Acids

54.01

Weight (kDa)

9.56

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005190)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13324
prunus_persica	Prupe.6G164700_v2.0.a1 Prupe.6G182100_v2.0.a1
pyrus_communis	pycom06g06460 pycom15g24790 pycom15g27610
rosa_chinensis	RchiOBHm_Chr5g0080361
rosa_laevigata	RLG00000018542 RLG00000036161 RLG00000036162
rosa_multiflora	Rmu_sc0007310.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288540 Rroxscaffold_4G00288590 Rroxscaffold_4G00323350
rosa_rugosa	Rorug01G0105500 Rorug01G0166300 Rorug02G0169100
rosa_samantha	Rh1AG080500 Rh1AG329900 Rh1BG311500 Rh1DG137800 Rh1DG343300 Rh2AG387800 Rh2CG375100 Rh3DG100300 Rh5BG152800 Rh5DG277500 Rh6AG151900
rosa_wichuraiana	Rw1G029250 Rw5G024840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	600
AcsI	RAATTY	1 cut(s)	834
AcvI	CACGTG	1 cut(s)	1035
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	2 cut(s)	97, 425
AflIII	ACRYGT	1 cut(s)	1032
AgsI	TTSAA	8 cut(s)	57, 245, 286, 391, 533, 619, 649, 698
AjnI	CCWGG	3 cut(s)	298, 460, 1255
AluBI	AGCT	8 cut(s)	218, 399, 668, 811, 928, 1148, 1288, 1318
AluI	AGCT	8 cut(s)	218, 399, 668, 811, 928, 1148, 1288, 1318
Alw21I	GWGCWC	2 cut(s)	944, 1040
Alw26I	GTCTC	1 cut(s)	26
Alw44I	GTGCAC	1 cut(s)	1036
AoxI	GGCC	3 cut(s)	65, 416, 1262
ApaLI	GTGCAC	1 cut(s)	1036
ApeKI	GCWGC	2 cut(s)	665, 1148
ApoI	RAATTY	1 cut(s)	834
AspA2I	CCTAGG	1 cut(s)	902
AspS9I	GGNCC	1 cut(s)	899
AsuHPI	GGTGA	1 cut(s)	1373
AsuII	TTCGAA	1 cut(s)	838
AvaII	GGWCC	1 cut(s)	899
AvrII	CCTAGG	1 cut(s)	902
BaeGI	GKGCMC	2 cut(s)	889, 1040
BanI	GGYRCC	1 cut(s)	600
BbrPI	CACGTG	1 cut(s)	1035
Bbv12I	GWGCWC	2 cut(s)	944, 1040
BbvCI	CCTCAGC	1 cut(s)	1319
BbvI	GCAGC	2 cut(s)	677, 1135
BccI	CCATC	6 cut(s)	100, 428, 442, 700, 739, 1235
BciT130I	CCWGG	3 cut(s)	300, 462, 1257
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	8 cut(s)	63, 641, 672, 827, 864, 903, 1191, 1266
BisI	GCNGC	2 cut(s)	666, 1149
BlnI	CCTAGG	1 cut(s)	902
BlsI	GCNGC	2 cut(s)	667, 1150
Bme1390I	CCNGG	3 cut(s)	300, 462, 1257
Bme18I	GGWCC	1 cut(s)	899
BmgT120I	GGNCC	1 cut(s)	899
BmiI	GGNNCC	1 cut(s)	602
BmrFI	CCNGG	3 cut(s)	300, 462, 1257
BmsI	GCATC	6 cut(s)	401, 481, 558, 717, 840, 965
BpmI	CTGGAG	1 cut(s)	1225
Bpu10I	CCTNAGC	1 cut(s)	1319
Bpu14I	TTCGAA	1 cut(s)	838
BpuEI	CTTGAG	1 cut(s)	133
BsaAI	YACGTR	1 cut(s)	1035
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	902
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 425
Bse1I	ACTGG	1 cut(s)	1208
BseBI	CCWGG	3 cut(s)	300, 462, 1257
BseDI	CCNNGG	1 cut(s)	902
BseGI	GGATG	4 cut(s)	111, 457, 510, 1011
BseLI	CCNNNNNNNGG	2 cut(s)	97, 425
BseMII	CTCAG	3 cut(s)	62, 357, 1310
BseNI	ACTGG	1 cut(s)	1208
BseRI	GAGGAG	1 cut(s)	1336
BseSI	GKGCMC	2 cut(s)	889, 1040
BseXI	GCAGC	2 cut(s)	677, 1135
BshFI	GGCC	3 cut(s)	67, 418, 1264
BshNI	GGYRCC	1 cut(s)	600
BsiHKAI	GWGCWC	2 cut(s)	944, 1040
BslFI	GGGAC	2 cut(s)	350, 1067
BslI	CCNNNNNNNGG	2 cut(s)	97, 425
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	2 cut(s)	350, 1067
BsmI	GAATGC	1 cut(s)	1129
BsnI	GGCC	3 cut(s)	67, 418, 1264
Bso31I	GGTCTC	1 cut(s)	26
Bsp119I	TTCGAA	1 cut(s)	838
Bsp1286I	GDGCHC	3 cut(s)	889, 944, 1040
Bsp143I	GATC	2 cut(s)	153, 674
BspANI	GGCC	3 cut(s)	67, 418, 1264
BspCNI	CTCAG	3 cut(s)	63, 356, 1311
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	602
BspQI	GCTCTTC	1 cut(s)	389
BspT104I	TTCGAA	1 cut(s)	838
BspT107I	GGYRCC	1 cut(s)	600
BspTNI	GGTCTC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	1208
BssECI	CCNNGG	1 cut(s)	902
BssMI	GATC	2 cut(s)	153, 674
BssT1I	CCWWGG	1 cut(s)	902
Bst2UI	CCWGG	3 cut(s)	300, 462, 1257
Bst4CI	ACNGT	2 cut(s)	310, 424
Bst6I	CTCTTC	2 cut(s)	273, 389
BstAPI	GCANNNNNTGC	2 cut(s)	948, 962
BstBAI	YACGTR	1 cut(s)	1035
BstBI	TTCGAA	1 cut(s)	838
BstC8I	GCNNGC	2 cut(s)	416, 552
BstDEI	CTNAG	7 cut(s)	71, 343, 771, 854, 869, 936, 1319
BstF5I	GGATG	4 cut(s)	111, 457, 510, 1011
BstKTI	GATC	2 cut(s)	156, 677
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	2 cut(s)	153, 674
BstMWI	GCNNNNNNNGC	3 cut(s)	948, 962, 1285
BstNI	CCWGG	3 cut(s)	300, 462, 1257
BstSCI	CCNGG	3 cut(s)	298, 460, 1255
BstSLI	GKGCMC	2 cut(s)	889, 1040
BstV1I	GCAGC	2 cut(s)	677, 1135
BsuRI	GGCC	3 cut(s)	67, 418, 1264
BtsCI	GGATG	4 cut(s)	111, 457, 510, 1011
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	3 cut(s)	68, 306, 573
Cac8I	GCNNGC	2 cut(s)	416, 552
CciI	TCATGA	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	899
Csp6I	GTAC	1 cut(s)	508
CspCI	CAANNNNNGTGG	4 cut(s)	57, 92, 641, 676
CviAII	CATG	7 cut(s)	16, 148, 233, 443, 586, 890, 1215
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	7 cut(s)	71, 343, 771, 854, 869, 936, 1319
DpnI	GATC	2 cut(s)	155, 676
DpnII	GATC	2 cut(s)	153, 674
DraI	TTTAAA	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	273, 389
EarI	CTCTTC	2 cut(s)	273, 389
Eco130I	CCWWGG	1 cut(s)	902
Eco147I	AGGCCT	1 cut(s)	1264
Eco31I	GGTCTC	1 cut(s)	26
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	899
Eco72I	CACGTG	1 cut(s)	1035
EcoRI	GAATTC	1 cut(s)	834
EcoRII	CCWGG	3 cut(s)	298, 460, 1255
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	902
EcoT22I	ATGCAT	2 cut(s)	591, 953
ErhI	CCWWGG	1 cut(s)	902
FaeI	CATG	7 cut(s)	19, 151, 236, 446, 589, 893, 1218
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 1040, 1072
FaqI	GGGAC	2 cut(s)	350, 1067
FatI	CATG	7 cut(s)	15, 147, 232, 442, 585, 889, 1214
FauNDI	CATATG	1 cut(s)	1153
Fnu4HI	GCNGC	2 cut(s)	666, 1149
FokI	GGATG	4 cut(s)	118, 444, 517, 1018
Fsp4HI	GCNGC	2 cut(s)	666, 1149
FspBI	CTAG	8 cut(s)	63, 641, 672, 827, 864, 903, 1191, 1266
GluI	GCNGC	2 cut(s)	666, 1149
GsuI	CTGGAG	1 cut(s)	1225
HaeIII	GGCC	3 cut(s)	67, 418, 1264
Hin1II	CATG	7 cut(s)	19, 151, 236, 446, 589, 893, 1218
HinfI	GANTC	2 cut(s)	42, 1065
HphI	GGTGA	1 cut(s)	1373
Hpy166II	GTNNAC	3 cut(s)	9, 1038, 1076
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	5 cut(s)	82, 148, 157, 619, 1196
Hpy8I	GTNNAC	3 cut(s)	9, 1038, 1076
HpyAV	CCTTC	4 cut(s)	280, 614, 1254, 1358
HpyCH4III	ACNGT	2 cut(s)	310, 424
HpyCH4IV	ACGT	1 cut(s)	1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	948, 962, 1285
HpyF3I	CTNAG	7 cut(s)	71, 343, 771, 854, 869, 936, 1319
HpySE526I	ACGT	1 cut(s)	1034
Hsp92II	CATG	7 cut(s)	19, 151, 236, 446, 589, 893, 1218
Kzo9I	GATC	2 cut(s)	153, 674
LguI	GCTCTTC	1 cut(s)	389
Lsp1109I	GCAGC	2 cut(s)	677, 1135
LweI	GCATC	6 cut(s)	401, 481, 558, 717, 840, 965
MaeI	CTAG	8 cut(s)	63, 641, 672, 827, 864, 903, 1191, 1266
MaeII	ACGT	1 cut(s)	1034
MaeIII	GTNAC	3 cut(s)	629, 750, 1367
MalI	GATC	2 cut(s)	155, 676
MboI	GATC	2 cut(s)	153, 674
MboII	GAAGA	9 cut(s)	163, 175, 257, 290, 403, 406, 724, 733, 736
MhlI	GDGCHC	3 cut(s)	889, 944, 1040
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	7 cut(s)	102, 153, 326, 1020, 1152, 1314, 1352
Mph1103I	ATGCAT	2 cut(s)	591, 953
MseI	TTAA	6 cut(s)	126, 227, 314, 351, 789, 987
MspR9I	CCNGG	3 cut(s)	300, 462, 1257
Mva1269I	GAATGC	1 cut(s)	1129
MvaI	CCWGG	3 cut(s)	300, 462, 1257
MwoI	GCNNNNNNNGC	3 cut(s)	948, 962, 1285
NdeI	CATATG	1 cut(s)	1153
NdeII	GATC	2 cut(s)	153, 674
NlaIII	CATG	7 cut(s)	19, 151, 236, 446, 589, 893, 1218
NlaIV	GGNNCC	1 cut(s)	602
NmuCI	GTSAC	3 cut(s)	629, 750, 1367
NsiI	ATGCAT	2 cut(s)	591, 953
NspV	TTCGAA	1 cut(s)	838
PagI	TCATGA	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	1264
PciSI	GCTCTTC	1 cut(s)	389
PctI	GAATGC	1 cut(s)	1129
PfeI	GAWTC	2 cut(s)	42, 1065
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	2 cut(s)	667, 1150
PmaCI	CACGTG	1 cut(s)	1035
PmlI	CACGTG	1 cut(s)	1035
Ppu21I	YACGTR	1 cut(s)	1035
PsiI	TTATAA	1 cut(s)	201
Psp6I	CCWGG	3 cut(s)	298, 460, 1255
PspCI	CACGTG	1 cut(s)	1035
PspGI	CCWGG	3 cut(s)	298, 460, 1255
PspN4I	GGNNCC	1 cut(s)	602
PspPI	GGNCC	1 cut(s)	899
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SapI	GCTCTTC	1 cut(s)	389
SaqAI	TTAA	6 cut(s)	126, 227, 314, 351, 789, 987
SatI	GCNGC	2 cut(s)	666, 1149
Sau3AI	GATC	2 cut(s)	153, 674
Sau96I	GGNCC	1 cut(s)	899
ScrFI	CCNGG	3 cut(s)	300, 462, 1257
SduI	GDGCHC	3 cut(s)	889, 944, 1040
SfaNI	GCATC	6 cut(s)	401, 481, 558, 717, 840, 965
SfuI	TTCGAA	1 cut(s)	838
SinI	GGWCC	1 cut(s)	899
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SseBI	AGGCCT	1 cut(s)	1264
SspMI	CTAG	8 cut(s)	63, 641, 672, 827, 864, 903, 1191, 1266
StuI	AGGCCT	1 cut(s)	1264
StyD4I	CCNGG	3 cut(s)	298, 460, 1255
StyI	CCWWGG	1 cut(s)	902
TaaI	ACNGT	2 cut(s)	310, 424
TaiI	ACGT	1 cut(s)	1037
TaqI	TCGA	1 cut(s)	838
TfiI	GAWTC	2 cut(s)	42, 1065
Tru1I	TTAA	6 cut(s)	126, 227, 314, 351, 789, 987
Tru9I	TTAA	6 cut(s)	126, 227, 314, 351, 789, 987
TscAI	CASTG	3 cut(s)	75, 313, 580
TseFI	GTSAC	3 cut(s)	629, 750, 1367
TseI	GCWGC	2 cut(s)	665, 1148
Tsp45I	GTSAC	3 cut(s)	629, 750, 1367
TspDTI	ATGAA	4 cut(s)	136, 164, 291, 734
TspRI	CASTG	3 cut(s)	75, 313, 580
VneI	GTGCAC	1 cut(s)	1036
VpaK11BI	GGWCC	1 cut(s)	899
XapI	RAATTY	1 cut(s)	834
XcmI	CCANNNNNNNNNTGG	1 cut(s)	738
XmaJI	CCTAGG	1 cut(s)	902
XspI	CTAG	8 cut(s)	63, 641, 672, 827, 864, 903, 1191, 1266
Zsp2I	ATGCAT	2 cut(s)	591, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.