FvH4_6g16250

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002191
Physical Location & Seq
Forward (+)
10229431 .. 10231482
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16250.t1

Sequence Viewer

Length: 1449 bp
ATGGAGACCAATCACCCAAAGCCTCATGCAATCATGGTACCTCTTTCTCTCCAAGGCCATGTCAACCCCTTCACCCATTTGGCCATGAAGCTTGCATCAAATGGCTTCACCATCACTTTTGTCAACACTGAATACTTTCATCACCAGATAACCAAATCCAAACTCAATAACACTGCACAAGAGCAAGAGCAAGATGACATCTTCGCGGCGGCGCGTGAGACCGGCCTTGACATACGCTATAGAACAGTGAGTGATGGTTTCCCACTGTCCTTCAATCGGTTTCAGAACCTTGACCAGTCTCTTGAGGGTGCTATCCATGTCTTCCCTGCCCATATTGATGAACTTGTTGGAGATTTAGTACAATCTGACCCCTCAATCAATTGTTTGATTGCTGACACCTTCCACACATGGACAGCAATGATAGCCAACAAGCACAACCTTATCAACATCTCCTTCTGGACTGAACCGGCTCTAGTCCTAAACATTTACTACCATTTGGACCTGCTCGTAAAACATGGTCATTTTGGTTGTCATGATAATTGTGAGGACACCATAGATTACATACCTGGTGTGCAGGCTATTGAACCAAAGGACTTGACGTCACACCTACACATTACTAATACCTCAGATCCAATGCTGCGAATCGTGAAGAAGGCGTTCCGCGAAGCTAAGAGGGCAGATTTTATACTGTGCAATACAGTTCAAGAGCTGGAAGCAGAATCTCTTTCAACCTTGCAAGACAAGCAACCTACATATGCAATTGGCCCTGTCTTCCCTACTGAACCCACTAAGAGTGTTGTGGCTACTAATCTGATGTCCGAGATTGACTGTACACAATGGCTCAAAACCAAGCCTCAAGGTTCAGTCTTGTATGTTTCATTTGGTAGCTATTGTCAAGTTACTAAGAATGAGTTTGAAGAAATAGCTCAGGGGCTTTTGCTTAGTAAAGTGAGTTTCATTTGGGTGCTACGCCCTGACACTATAAGCTATGAGGAAGAAGGGTACATTGTTCCCTTTGGATTCGAAGACCAGATTAGTGATAGAGGGTTAATGGTGCCTTGGTGTTCTCAGATTGAGGTGCTCTCAAATCCAGCAATAGGAGGGTTCTTAACTCATTGTGGATGGAATTCCATACTGGAAAGTATGTGGTTTGGTGTACCAATGCTGTGTTTTCCTATTTCAACTGACCAATTTACTAATAGGAAACTAGTGGTTGATGATTGGAGGATTGGTCTCAATCTTTGTGATAGGAAGCCAATCGCAAGGTTGGAGGTAGCACACAAGGTCAATCGTCTGATGAATGGAAATTTGGGTGATGGAATATTGCAGAAGGAGATCAAGAAGGCAAAGCAGACATTAGAGGATGCTTTGTCTGCAAATGGGTCATCACAACAGAGTTTATGCCAATTCATTAACGATGTAAAAGCCAAAATTCAAACACGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

483

Amino Acids

54.37

Weight (kDa)

5.55

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 286 - 409 9.8e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 602
Acc36I ACCTGC 1 cut(s) 510
Acc65I GGTACC 1 cut(s) 37
AccB1I GGYRCC 2 cut(s) 37, 1054
AccII CGCG 3 cut(s) 206, 214, 663
AciI CCGC 3 cut(s) 206, 209, 661
AclWI GGATC 1 cut(s) 623
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 4 cut(s) 1126, 1306, 1431, 1443
AcyI GRCGYC 1 cut(s) 599
AfaI GTAC 5 cut(s) 39, 360, 832, 1004, 1158
AfiI CCNNNNNNNGG 2 cut(s) 276, 1097
AgsI TTSAA 7 cut(s) 274, 584, 704, 729, 917, 1182, 1436
AhdI GACNNNNNGTC 1 cut(s) 598
AhlI ACTAGT 1 cut(s) 1207
AjnI CCWGG 1 cut(s) 565
AjuI GAANNNNNNNTTGG 2 cut(s) 1292, 1324
AluBI AGCT 6 cut(s) 91, 668, 709, 888, 926, 987
AluI AGCT 6 cut(s) 91, 668, 709, 888, 926, 987
Alw21I GWGCWC 1 cut(s) 1083
Alw26I GTCTC 3 cut(s) 212, 303, 1238
AlwI GGATC 1 cut(s) 623
AoxI GGCC 4 cut(s) 55, 81, 223, 763
ApeKI GCWGC 1 cut(s) 637
ApoI RAATTY 4 cut(s) 1126, 1306, 1431, 1443
Asp700I GAANNNNTTC 2 cut(s) 135, 656
Asp718I GGTACC 1 cut(s) 37
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 2 cut(s) 499, 764
AsuHPI GGTGA 5 cut(s) 5, 64, 100, 134, 1325
AsuII TTCGAA 1 cut(s) 1023
AvaII GGWCC 1 cut(s) 499
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 2 cut(s) 37, 1054
BbsI GAAGAC 3 cut(s) 313, 763, 1032
Bbv12I GWGCWC 1 cut(s) 1083
BbvI GCAGC 1 cut(s) 624
BccI CCATC 4 cut(s) 119, 248, 1116, 1310
BciT130I CCWGG 1 cut(s) 567
BcoDI GTCTC 3 cut(s) 212, 303, 1238
BcuI ACTAGT 1 cut(s) 1207
BfaI CTAG 2 cut(s) 473, 1208
BfmI CTRYAG 1 cut(s) 238
BfuAI ACCTGC 1 cut(s) 510
BisI GCNGC 3 cut(s) 207, 210, 638
BlsI GCNGC 3 cut(s) 208, 211, 639
Bme1390I CCNGG 1 cut(s) 567
Bme18I GGWCC 1 cut(s) 499
BmeRI GACNNNNNGTC 1 cut(s) 598
BmgT120I GGNCC 2 cut(s) 499, 764
BmiI GGNNCC 2 cut(s) 39, 1056
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 2 cut(s) 104, 1354
BpiI GAAGAC 3 cut(s) 313, 763, 1032
BplI GAGNNNNNCTC 2 cut(s) 1067, 1099
Bpu10I CCTNAGC 1 cut(s) 927
Bpu14I TTCGAA 1 cut(s) 1023
BpuEI CTTGAG 2 cut(s) 323, 840
BsaHI GRCGYC 1 cut(s) 599
BsaI GGTCTC 2 cut(s) 212, 1238
BsaJI CCNNGG 2 cut(s) 52, 1058
BsaXI ACNNNNNCTCC 4 cut(s) 342, 372, 1216, 1246
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 1097
Bse118I RCCGGY 2 cut(s) 221, 466
Bse1I ACTGG 2 cut(s) 295, 1140
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 2 cut(s) 52, 1058
BseGI GGATG 2 cut(s) 1127, 1369
BseLI CCNNNNNNNGG 2 cut(s) 276, 1097
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 3 cut(s) 639, 941, 1082
BseNI ACTGG 2 cut(s) 295, 1140
BseXI GCAGC 1 cut(s) 624
BsgI GTGCAG 2 cut(s) 159, 593
Bsh1236I CGCG 3 cut(s) 206, 214, 663
BshFI GGCC 4 cut(s) 57, 83, 225, 765
BshNI GGYRCC 2 cut(s) 37, 1054
BsiHKAI GWGCWC 1 cut(s) 1083
BsiSI CCGG 2 cut(s) 222, 467
BslI CCNNNNNNNGG 2 cut(s) 276, 1097
BsmAI GTCTC 3 cut(s) 212, 303, 1238
BsnI GGCC 4 cut(s) 57, 83, 225, 765
Bso31I GGTCTC 2 cut(s) 212, 1238
Bsp119I TTCGAA 1 cut(s) 1023
Bsp1286I GDGCHC 1 cut(s) 1083
Bsp1407I TGTACA 1 cut(s) 830
Bsp143I GATC 2 cut(s) 628, 1335
BspACI CCGC 3 cut(s) 206, 209, 661
BspANI GGCC 4 cut(s) 57, 83, 225, 765
BspCNI CTCAG 3 cut(s) 638, 940, 1081
BspFNI CGCG 3 cut(s) 206, 214, 663
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 2 cut(s) 39, 1056
BspMI ACCTGC 1 cut(s) 510
BspPI GGATC 1 cut(s) 623
BspT104I TTCGAA 1 cut(s) 1023
BspT107I GGYRCC 2 cut(s) 37, 1054
BspTNI GGTCTC 2 cut(s) 212, 1238
BsrDI GCAATG 1 cut(s) 423
BsrFI RCCGGY 2 cut(s) 221, 466
BsrGI TGTACA 1 cut(s) 830
BsrI ACTGG 2 cut(s) 295, 1140
BssAI RCCGGY 2 cut(s) 221, 466
BssECI CCNNGG 2 cut(s) 52, 1058
BssMI GATC 2 cut(s) 628, 1335
BssNI GRCGYC 1 cut(s) 599
BssT1I CCWWGG 2 cut(s) 52, 1058
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 5 cut(s) 247, 267, 690, 700, 830
BstACI GRCGYC 1 cut(s) 599
BstAUI TGTACA 1 cut(s) 830
BstBI TTCGAA 1 cut(s) 1023
BstC8I GCNNGC 2 cut(s) 93, 576
BstDEI CTNAG 7 cut(s) 625, 669, 789, 903, 927, 941, 1068
BstF5I GGATG 2 cut(s) 1127, 1369
BstFNI CGCG 3 cut(s) 206, 214, 663
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 2 cut(s) 631, 1338
BstMAI GTCTC 3 cut(s) 212, 303, 1238
BstMBI GATC 2 cut(s) 628, 1335
BstMWI GCNNNNNNNGC 4 cut(s) 422, 674, 742, 1373
BstNI CCWGG 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 565
BstSFI CTRYAG 1 cut(s) 238
BstUI CGCG 3 cut(s) 206, 214, 663
BstV1I GCAGC 1 cut(s) 624
BstV2I GAAGAC 3 cut(s) 313, 763, 1032
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
BsuRI GGCC 4 cut(s) 57, 83, 225, 765
BtsCI GGATG 2 cut(s) 1127, 1369
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 4 cut(s) 126, 171, 252, 263
BveI ACCTGC 1 cut(s) 510
Cac8I GCNNGC 2 cut(s) 93, 576
CciI TCATGA 1 cut(s) 532
CfoI GCGC 1 cut(s) 214
Cfr10I RCCGGY 2 cut(s) 221, 466
Cfr13I GGNCC 2 cut(s) 499, 764
CsiI ACCWGGT 1 cut(s) 565
Csp6I GTAC 5 cut(s) 38, 359, 831, 1003, 1157
CviAII CATG 8 cut(s) 26, 34, 59, 85, 317, 408, 515, 533
CviQI GTAC 5 cut(s) 38, 359, 831, 1003, 1157
DdeI CTNAG 7 cut(s) 625, 669, 789, 903, 927, 941, 1068
DpnI GATC 2 cut(s) 630, 1337
DpnII GATC 2 cut(s) 628, 1335
DriI GACNNNNNGTC 1 cut(s) 598
EaeI YGGCCR 1 cut(s) 81
Eam1105I GACNNNNNGTC 1 cut(s) 598
Eco130I CCWWGG 2 cut(s) 52, 1058
Eco31I GGTCTC 2 cut(s) 212, 1238
Eco47I GGWCC 1 cut(s) 499
EcoRI GAATTC 1 cut(s) 1126
EcoRII CCWGG 1 cut(s) 565
EcoT14I CCWWGG 2 cut(s) 52, 1058
ErhI CCWWGG 2 cut(s) 52, 1058
FaeI CATG 8 cut(s) 29, 37, 62, 88, 320, 411, 518, 536
FatI CATG 8 cut(s) 25, 33, 58, 84, 316, 407, 514, 532
FauNDI CATATG 1 cut(s) 754
Fnu4HI GCNGC 3 cut(s) 207, 210, 638
FokI GGATG 2 cut(s) 1134, 1376
Fsp4HI GCNGC 3 cut(s) 207, 210, 638
FspBI CTAG 2 cut(s) 473, 1208
GlaI GCGC 1 cut(s) 213
GluI GCNGC 3 cut(s) 207, 210, 638
HaeIII GGCC 4 cut(s) 57, 83, 225, 765
HapII CCGG 2 cut(s) 222, 467
HhaI GCGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 599
Hin1II CATG 8 cut(s) 29, 37, 62, 88, 320, 411, 518, 536
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 2 cut(s) 64, 124
HindII GTYRAC 2 cut(s) 64, 124
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 3 cut(s) 642, 719, 1020
HpaII CCGG 2 cut(s) 222, 467
HphI GGTGA 5 cut(s) 5, 64, 100, 134, 1325
Hpy166II GTNNAC 4 cut(s) 64, 124, 833, 1157
Hpy188I TCNGA 7 cut(s) 285, 367, 628, 813, 820, 1071, 1296
Hpy188III TCNNGA 6 cut(s) 302, 457, 533, 646, 704, 1339
Hpy8I GTNNAC 4 cut(s) 64, 124, 833, 1157
HpyAV CCTTC 8 cut(s) 79, 280, 409, 463, 646, 992, 1324, 1336
HpyCH4III ACNGT 5 cut(s) 247, 267, 690, 700, 830
HpyCH4IV ACGT 1 cut(s) 599
HpyCH4V TGCA 9 cut(s) 29, 95, 176, 574, 693, 736, 758, 1327, 1376
HpyF10VI GCNNNNNNNGC 4 cut(s) 422, 674, 742, 1373
HpyF3I CTNAG 7 cut(s) 625, 669, 789, 903, 927, 941, 1068
HpySE526I ACGT 1 cut(s) 599
Hsp92I GRCGYC 1 cut(s) 599
Hsp92II CATG 8 cut(s) 29, 37, 62, 88, 320, 411, 518, 536
HspAI GCGC 1 cut(s) 212
KpnI GGTACC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 628, 1335
Lsp1109I GCAGC 1 cut(s) 624
LweI GCATC 2 cut(s) 104, 1354
MabI ACCWGGT 1 cut(s) 565
MaeI CTAG 2 cut(s) 473, 1208
MaeII ACGT 1 cut(s) 599
MaeIII GTNAC 2 cut(s) 600, 898
MalI GATC 2 cut(s) 630, 1337
MboI GATC 2 cut(s) 628, 1335
MboII GAAGA 7 cut(s) 193, 313, 661, 763, 929, 1007, 1037
MfeI CAATTG 2 cut(s) 379, 759
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 1 cut(s) 1083
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 9 cut(s) 379, 538, 759, 1126, 1190, 1306, 1406, 1431, 1443
MluNI TGGCCA 1 cut(s) 83
MmeI TCCRAC 2 cut(s) 328, 1248
Mox20I TGGCCA 1 cut(s) 83
MroXI GAANNNNTTC 2 cut(s) 135, 656
MscI TGGCCA 1 cut(s) 83
MseI TTAA 3 cut(s) 1049, 1109, 1413
MslI CAYNNNNRTG 2 cut(s) 336, 962
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 2 cut(s) 222, 467
MspR9I CCNGG 1 cut(s) 567
MunI CAATTG 2 cut(s) 379, 759
MvaI CCWGG 1 cut(s) 567
MvnI CGCG 3 cut(s) 206, 214, 663
MwoI GCNNNNNNNGC 4 cut(s) 422, 674, 742, 1373
NdeI CATATG 1 cut(s) 754
NdeII GATC 2 cut(s) 628, 1335
NlaIII CATG 8 cut(s) 29, 37, 62, 88, 320, 411, 518, 536
NlaIV GGNNCC 2 cut(s) 39, 1056
NmuCI GTSAC 1 cut(s) 600
NspV TTCGAA 1 cut(s) 1023
PagI TCATGA 1 cut(s) 532
PdmI GAANNNNTTC 2 cut(s) 135, 656
PfeI GAWTC 3 cut(s) 642, 719, 1020
PkrI GCNGC 3 cut(s) 208, 211, 639
Psp6I CCWGG 1 cut(s) 565
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 2 cut(s) 39, 1056
PspPI GGNCC 2 cut(s) 499, 764
PsuI RGATCY 1 cut(s) 628
RsaI GTAC 5 cut(s) 39, 360, 832, 1004, 1158
RsaNI GTAC 5 cut(s) 38, 359, 831, 1003, 1157
RseI CAYNNNNRTG 2 cut(s) 336, 962
SaqAI TTAA 3 cut(s) 1049, 1109, 1413
SatI GCNGC 3 cut(s) 207, 210, 638
Sau3AI GATC 2 cut(s) 628, 1335
Sau96I GGNCC 2 cut(s) 499, 764
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 1 cut(s) 1083
SexAI ACCWGGT 1 cut(s) 565
SfaNI GCATC 2 cut(s) 104, 1354
SfcI CTRYAG 1 cut(s) 238
SfuI TTCGAA 1 cut(s) 1023
SinI GGWCC 1 cut(s) 499
SmiMI CAYNNNNRTG 2 cut(s) 336, 962
SmlI CTYRAG 2 cut(s) 302, 855
SmoI CTYRAG 2 cut(s) 302, 855
SpeI ACTAGT 1 cut(s) 1207
Sse9I AATT 9 cut(s) 379, 538, 759, 1126, 1190, 1306, 1406, 1431, 1443
SsiI CCGC 3 cut(s) 206, 209, 661
SspI AATATT 1 cut(s) 1323
SspMI CTAG 2 cut(s) 473, 1208
StyD4I CCNGG 1 cut(s) 565
StyI CCWWGG 2 cut(s) 52, 1058
TaaI ACNGT 5 cut(s) 247, 267, 690, 700, 830
TaiI ACGT 1 cut(s) 602
TaqI TCGA 1 cut(s) 1023
TasI AATT 9 cut(s) 379, 538, 759, 1126, 1190, 1306, 1406, 1431, 1443
TatI WGTACW 2 cut(s) 358, 830
TauI GCSGC 2 cut(s) 209, 212
TfiI GAWTC 3 cut(s) 642, 719, 1020
Tru1I TTAA 3 cut(s) 1049, 1109, 1413
Tru9I TTAA 3 cut(s) 1049, 1109, 1413
TscAI CASTG 4 cut(s) 133, 178, 252, 270
TseFI GTSAC 1 cut(s) 600
TseI GCWGC 1 cut(s) 637
Tsp45I GTSAC 1 cut(s) 600
TspDTI ATGAA 7 cut(s) 101, 128, 354, 867, 946, 1313, 1399
TspRI CASTG 4 cut(s) 133, 178, 252, 270
VpaK11BI GGWCC 1 cut(s) 499
XapI RAATTY 4 cut(s) 1126, 1306, 1431, 1443
XmnI GAANNNNTTC 2 cut(s) 135, 656
XspI CTAG 2 cut(s) 473, 1208
ZraI GACGTC 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.