Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002191

Physical Location & Seq

Genomic Coordinates Reverse (-)

13542765 .. 13544723

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g11320.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGCGGCAAATCCGTCAACCAGAAAAATGGCCAACGGGTGTGACAACCGTTTTAGTATATAGAGATATGTATGTGGATTACATACAGGCTGTCTGTGTATTAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGAGGAAAATCACTCAAAGCCTCACGCAATCATGGTGCCTCTTCCTATCCAAGGCCATGTAATCCCATTCACCAATCTAGCCATGAAGCTTGCATCAAATGGTTTCACCATCACTTTTGTCAACACCAAATGTGTTCACCACCAGCTACTCAAATCACAACCCAACAACAACTCTGGAGATCAAGATGACATCTTCTCCAAAGTGCGGGAATCCGGCCTAGACATACGCTACACAACGGTGAGTGACGGTCTTCCATTAGCTTTCAACCGATTTCAGAATCTCGACCAATTTCTTGAGTGTTCTTTGCATGTCTTCCCTGCTCATGTTGATGAACTTGTTGGAGATTTAGTCCAATCTGACCCCTCAATCACTTGCTTGATCGCTGATACCTACCACTGTTGGCCAGCAACCATAGCCAACAAGTACAATCTTGTCCATATTTCTTTTTGGACTCAACCAGCTCTAGTTTTTAACATCTACTATCACTTGGACCTCCTCATAAAAAATGGTCATTTTGGTTCTCAAGATAATCGTGAGGGCACCATCGATTACATACCTGGAGTGAAGGCTATTGAACCAAAGGACTTGATGTCAAAATTTCAAGAAACAGATATATCAACACCGATGCACCGTGTCATATACAAGGCGTACGAGGAAGTGAAAGGGGCAGATTTCATATTGTGTAATACAGTGCAAGAACTTGAATCCGAGTCCCTCTCAGCCTTGCAAGAGAAGCAACCCACCTATGCAATTGGTCCTGTTCTCTCCAATAAACCTACTAAGGGTATGGTGGCTACCAATTTAATGTCAGAGTTTGACTGTACCCAGTGGCTCCACACTAAGCCACATGGTTCAGTTTTGTTCATTTCATTTGGAAGCTATGGTCAAGTTACTAAAAATGATTTCGAAGAAATAGCTCATGGACTTTTGCTTAGTAAAGTGAGTTTCATCTGGGTGCTTCGCCCGGACACAACAAGTTATGATGAAACATGTATCATGCCGGTCGGATTTGAGGACGAGACTAAAGATAGAGGGTTGATGGTGCCATGGTGCTCTCAGATTCAGGTGCTTTTGCATCCAGCTATAGGAGGATTCTTAACACATTGTGGATGGAATTCCATACTTGAAAGTATGCGGTGTGGGGTTCCCATGTTGTGTTTTCCTCTATGGACTGACCAAGTCACTAATAGGAAACTAGTAGTTGATGATTGGGGAATTGGACTAAATCTTTGTGATACAGTTAAACTCGTTACAAGAGCAGAAGTAGGGGAGAAGATCAACCGTCTGATGTGTGGAGATTCGGGTGATGGATTACAGAAACAGATCAAGAAAGTAAGGCAAACTTTAGAAGACGCATTGGCTGTAAATGGGTCATCAGAAAGAAATTTATCTCAATTCATTTGTGGCGTTAAGGAAAAAATTCGGACACGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

523

Amino Acids

59.1

Weight (kDa)

5.73

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36970
fragaria_vesca	FvH4_6g16230 FvH4_6g16230 FvH4_6g16250
malus_domestica	MD12G1114000.v1.1 MD12G1114100.v1.1 MD12G1114200.v1.1
prunus_persica	Prupe.6G233100_v2.0.a1 Prupe.6G233200_v2.0.a1 Prupe.6G233300_v2.0.a1 Prupe.6G233400_v2.0.a1 Prupe.6G233500_v2.0.a1 Prupe.6G233600_v2.0.a1 Prupe.6G233600_v2.0.a1
pyrus_communis	pycom12g11320 pycom12g11330 pycom12g11340
rosa_chinensis	RchiOBHm_Chr3g0470071 RchiOBHm_Chr3g0470101 RchiOBHm_Chr3g0470111
rosa_laevigata	RLG00000024296 RLG00000024298 RLG00000024299
rosa_multiflora	Rmu_sc0005600.1_g000011 Rmu_sc0005600.1_g000012 Rmu_sc0009114.1_g000016
rosa_roxburghii	Rroxscaffold_6G00411170 Rroxscaffold_6G00411180 Rroxscaffold_6G00411200
rosa_rugosa	Rorug03G0106700 Rorug03G0106700
rosa_samantha	Rh3AG155900 Rh3AG156200 Rh3BG180100 Rh3BG180200 Rh3CG170600 Rh3CG171000 Rh3DG195100
rosa_wichuraiana	Rw3G014680 Rw3G014690 Rw3G014700 Rw3G014760 Rw3G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	166, 671, 1174
AciI	CCGC	3 cut(s)	4, 337, 1267
AcoI	YGGCCR	2 cut(s)	29, 533
AcsI	RAATTY	4 cut(s)	728, 1246, 1516, 1551
AdeI	CACNNNGTG	1 cut(s)	1238
AfaI	GTAC	3 cut(s)	557, 782, 955
AfiI	CCNNNNNNNGG	4 cut(s)	182, 336, 914, 1217
AflIII	ACRYGT	1 cut(s)	1121
AgsI	TTSAA	5 cut(s)	397, 707, 734, 836, 1259
AhdI	GACNNNNNGTC	1 cut(s)	721
AhlI	ACTAGT	1 cut(s)	1327
AjnI	CCWGG	1 cut(s)	688
AleI	CACNNNNGTG	1 cut(s)	368
AluBI	AGCT	7 cut(s)	220, 277, 392, 593, 1011, 1049, 1214
AluI	AGCT	7 cut(s)	220, 277, 392, 593, 1011, 1049, 1214
Alw21I	GWGCWC	1 cut(s)	1187
Alw26I	GTCTC	1 cut(s)	1145
AoxI	GGCC	4 cut(s)	29, 184, 346, 533
ApoI	RAATTY	4 cut(s)	728, 1246, 1516, 1551
ArsI	GACNNNNNNTTYG	2 cut(s)	1344, 1376
Asp700I	GAANNNNTTC	1 cut(s)	1551
AspS9I	GGNCC	2 cut(s)	622, 887
AsuC2I	CCSGG	1 cut(s)	1097
AsuHPI	GGTGA	5 cut(s)	193, 229, 260, 382, 1448
AsuII	TTCGAA	1 cut(s)	1038
AvaII	GGWCC	2 cut(s)	622, 887
BaeGI	GKGCMC	1 cut(s)	674
BalI	TGGCCA	2 cut(s)	31, 535
BanI	GGYRCC	3 cut(s)	166, 671, 1174
BauI	CACGAG	1 cut(s)	1560
BbsI	GAAGAC	3 cut(s)	374, 436, 1488
Bbv12I	GWGCWC	1 cut(s)	1187
BccI	CCATC	6 cut(s)	124, 248, 683, 1165, 1236, 1433
BciT130I	CCWGG	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	1097
BcoDI	GTCTC	1 cut(s)	1145
BcuI	ACTAGT	1 cut(s)	1327
BfaI	CTAG	4 cut(s)	209, 350, 596, 1328
BfmI	CTRYAG	1 cut(s)	1215
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	2 cut(s)	690, 1097
Bme18I	GGWCC	2 cut(s)	622, 887
BmeRI	GACNNNNNGTC	1 cut(s)	721
BmgT120I	GGNCC	2 cut(s)	622, 887
BmiI	GGNNCC	5 cut(s)	168, 673, 965, 1176, 1278
BmrFI	CCNGG	2 cut(s)	690, 1097
BmrI	ACTGGG	1 cut(s)	952
BmsI	GCATC	3 cut(s)	233, 747, 1216
BmuI	ACTGGG	1 cut(s)	952
BpiI	GAAGAC	3 cut(s)	374, 436, 1488
BplI	GAGNNNNNCTC	2 cut(s)	833, 865
BpmI	CTGGAG	2 cut(s)	327, 711
Bpu14I	TTCGAA	1 cut(s)	1038
BpuEI	CTTGAG	2 cut(s)	446, 639
BpuMI	CCSGG	1 cut(s)	1097
Bsa29I	ATCGAT	1 cut(s)	678
BsaJI	CCNNGG	2 cut(s)	181, 1178
BsaXI	ACNNNNNCTCC	4 cut(s)	311, 341, 465, 495
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 336, 914, 1217
Bse118I	RCCGGY	1 cut(s)	1132
Bse1I	ACTGG	1 cut(s)	958
BseBI	CCWGG	1 cut(s)	690
BseCI	ATCGAT	1 cut(s)	678
BseDI	CCNNGG	2 cut(s)	181, 1178
BseGI	GGATG	2 cut(s)	1207, 1247
BseLI	CCNNNNNNNGG	4 cut(s)	182, 336, 914, 1217
BseMII	CTCAG	2 cut(s)	864, 1202
BseNI	ACTGG	1 cut(s)	958
BseRI	GAGGAG	1 cut(s)	617
BseSI	GKGCMC	1 cut(s)	674
Bsh1285I	CGRYCG	1 cut(s)	1137
BshFI	GGCC	4 cut(s)	31, 186, 348, 535
BshNI	GGYRCC	3 cut(s)	166, 671, 1174
BshVI	ATCGAT	1 cut(s)	678
BsiEI	CGRYCG	1 cut(s)	1137
BsiHKAI	GWGCWC	1 cut(s)	1187
BsiSI	CCGG	3 cut(s)	345, 1097, 1133
BsiWI	CGTACG	1 cut(s)	780
BslFI	GGGAC	1 cut(s)	829
BslI	CCNNNNNNNGG	4 cut(s)	182, 336, 914, 1217
BsmAI	GTCTC	1 cut(s)	1145
BsmFI	GGGAC	1 cut(s)	829
BsnI	GGCC	4 cut(s)	31, 186, 348, 535
Bsp119I	TTCGAA	1 cut(s)	1038
Bsp1286I	GDGCHC	2 cut(s)	674, 1187
Bsp143I	GATC	4 cut(s)	310, 510, 1407, 1455
Bsp19I	CCATGG	1 cut(s)	1178
BspACI	CCGC	3 cut(s)	4, 337, 1267
BspANI	GGCC	4 cut(s)	31, 186, 348, 535
BspCNI	CTCAG	2 cut(s)	863, 1201
BspDI	ATCGAT	1 cut(s)	678
BspLI	GGNNCC	5 cut(s)	168, 673, 965, 1176, 1278
BspT104I	TTCGAA	1 cut(s)	1038
BspT107I	GGYRCC	3 cut(s)	166, 671, 1174
BsrFI	RCCGGY	1 cut(s)	1132
BsrI	ACTGG	1 cut(s)	958
BssAI	RCCGGY	1 cut(s)	1132
BssECI	CCNNGG	2 cut(s)	181, 1178
BssMI	GATC	4 cut(s)	310, 510, 1407, 1455
BssSI	CACGAG	1 cut(s)	1560
BssT1I	CCWWGG	2 cut(s)	181, 1178
Bst2BI	CACGAG	1 cut(s)	1560
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	9 cut(s)	49, 370, 380, 530, 764, 823, 953, 1372, 1415
Bst6I	CTCTTC	1 cut(s)	177
BstBI	TTCGAA	1 cut(s)	1038
BstC8I	GCNNGC	2 cut(s)	222, 537
BstDEI	CTNAG	5 cut(s)	850, 912, 972, 1064, 1188
BstDSI	CCRYGG	1 cut(s)	1178
BstENI	CCTNNNNNAGG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	1207, 1247
BstKTI	GATC	4 cut(s)	313, 513, 1410, 1458
BstMAI	GTCTC	1 cut(s)	1145
BstMBI	GATC	4 cut(s)	310, 510, 1407, 1455
BstMCI	CGRYCG	1 cut(s)	1137
BstMWI	GCNNNNNNNGC	2 cut(s)	545, 865
BstNI	CCWGG	1 cut(s)	690
BstNSI	RCATGY	2 cut(s)	443, 1125
BstSCI	CCNGG	2 cut(s)	688, 1095
BstSFI	CTRYAG	1 cut(s)	1215
BstSLI	GKGCMC	1 cut(s)	674
BstV2I	GAAGAC	3 cut(s)	374, 436, 1488
BstXI	CCANNNNNNTGG	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	678
BsuRI	GGCC	4 cut(s)	31, 186, 348, 535
BsuTUI	ATCGAT	1 cut(s)	678
BtgI	CCRYGG	1 cut(s)	1178
BtsCI	GGATG	2 cut(s)	1207, 1247
BtsIMutI	CAGTG	3 cut(s)	526, 828, 965
Cac8I	GCNNGC	2 cut(s)	222, 537
Cfr10I	RCCGGY	1 cut(s)	1132
Cfr13I	GGNCC	2 cut(s)	622, 887
ClaI	ATCGAT	1 cut(s)	678
CseI	GACGC	1 cut(s)	1493
Csp6I	GTAC	3 cut(s)	556, 781, 954
CviQI	GTAC	3 cut(s)	556, 781, 954
DdeI	CTNAG	5 cut(s)	850, 912, 972, 1064, 1188
DpnI	GATC	4 cut(s)	312, 512, 1409, 1457
DpnII	GATC	4 cut(s)	310, 510, 1407, 1455
DraIII	CACNNNGTG	1 cut(s)	1238
DriI	GACNNNNNGTC	1 cut(s)	721
EaeI	YGGCCR	2 cut(s)	29, 533
Eam1104I	CTCTTC	1 cut(s)	177
Eam1105I	GACNNNNNGTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	2 cut(s)	181, 1178
Eco47I	GGWCC	2 cut(s)	622, 887
EcoNI	CCTNNNNNAGG	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	1246
EcoRII	CCWGG	1 cut(s)	688
EcoT14I	CCWWGG	2 cut(s)	181, 1178
ErhI	CCWWGG	2 cut(s)	181, 1178
FalI	AAGNNNNNCTT	2 cut(s)	1459, 1491
FaqI	GGGAC	1 cut(s)	829
FauI	CCCGC	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	2 cut(s)	1194, 1254
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	4 cut(s)	209, 350, 596, 1328
GluI	GCNGC	1 cut(s)	5
GsuI	CTGGAG	2 cut(s)	327, 711
HaeIII	GGCC	4 cut(s)	31, 186, 348, 535
HapII	CCGG	3 cut(s)	345, 1097, 1133
HgaI	GACGC	1 cut(s)	1493
HincII	GTYRAC	2 cut(s)	17, 253
HindII	GTYRAC	2 cut(s)	17, 253
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	8 cut(s)	341, 409, 583, 836, 842, 1192, 1224, 1430
HpaII	CCGG	3 cut(s)	345, 1097, 1133
HphI	GGTGA	5 cut(s)	193, 229, 260, 382, 1448
Hpy166II	GTNNAC	3 cut(s)	17, 253, 268
Hpy188I	TCNGA	9 cut(s)	408, 490, 841, 943, 1139, 1191, 1419, 1510, 1557
Hpy188III	TCNNGA	8 cut(s)	306, 314, 413, 425, 656, 665, 734, 1459
Hpy8I	GTNNAC	3 cut(s)	17, 253, 268
HpyAV	CCTTC	1 cut(s)	691
HpyCH4III	ACNGT	9 cut(s)	49, 370, 380, 530, 764, 823, 953, 1372, 1415
HpyCH4V	TGCA	7 cut(s)	224, 439, 760, 826, 859, 881, 1207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	545, 865
HpyF3I	CTNAG	5 cut(s)	850, 912, 972, 1064, 1188
Kzo9I	GATC	4 cut(s)	310, 510, 1407, 1455
LmnI	GCTCC	1 cut(s)	969
LweI	GCATC	3 cut(s)	233, 747, 1216
MaeI	CTAG	4 cut(s)	209, 350, 596, 1328
MaeIII	GTNAC	5 cut(s)	40, 374, 1021, 1312, 1381
MalI	GATC	4 cut(s)	312, 512, 1409, 1457
MboI	GATC	4 cut(s)	310, 510, 1407, 1455
MboII	GAAGA	7 cut(s)	164, 316, 374, 436, 1052, 1417, 1493
MfeI	CAATTG	1 cut(s)	882
MhlI	GDGCHC	2 cut(s)	674, 1187
MlsI	TGGCCA	2 cut(s)	31, 535
MluCI	AATT	9 cut(s)	419, 728, 882, 931, 1246, 1347, 1516, 1526, 1551
MluNI	TGGCCA	2 cut(s)	31, 535
MlyI	GAGTC	2 cut(s)	577, 851
MmeI	TCCRAC	2 cut(s)	451, 1117
Mox20I	TGGCCA	2 cut(s)	31, 535
MroXI	GAANNNNTTC	1 cut(s)	1551
MscI	TGGCCA	2 cut(s)	31, 535
MseI	TTAA	5 cut(s)	603, 935, 1229, 1374, 1542
MslI	CAYNNNNRTG	4 cut(s)	368, 459, 1085, 1564
Msp20I	TGGCCA	2 cut(s)	31, 535
MspI	CCGG	3 cut(s)	345, 1097, 1133
MspR9I	CCNGG	2 cut(s)	690, 1097
MunI	CAATTG	1 cut(s)	882
MvaI	CCWGG	1 cut(s)	690
MwoI	GCNNNNNNNGC	2 cut(s)	545, 865
NciI	CCSGG	1 cut(s)	1097
NcoI	CCATGG	1 cut(s)	1178
NdeII	GATC	4 cut(s)	310, 510, 1407, 1455
NlaIV	GGNNCC	5 cut(s)	168, 673, 965, 1176, 1278
NmuCI	GTSAC	3 cut(s)	40, 374, 1312
NspI	RCATGY	2 cut(s)	443, 1125
NspV	TTCGAA	1 cut(s)	1038
OliI	CACNNNNGTG	1 cut(s)	368
PciI	ACATGT	1 cut(s)	1121
PdmI	GAANNNNTTC	1 cut(s)	1551
PfeI	GAWTC	6 cut(s)	341, 409, 836, 1192, 1224, 1430
Pfl23II	CGTACG	1 cut(s)	780
PflFI	GACNNNGTC	1 cut(s)	1310
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	2 cut(s)	577, 850
PpsI	GAGTC	2 cut(s)	577, 850
PscI	ACATGT	1 cut(s)	1121
Psp6I	CCWGG	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	688
PspLI	CGTACG	1 cut(s)	780
PspN4I	GGNNCC	5 cut(s)	168, 673, 965, 1176, 1278
PspPI	GGNCC	2 cut(s)	622, 887
PsyI	GACNNNGTC	1 cut(s)	1310
RsaI	GTAC	3 cut(s)	557, 782, 955
RsaNI	GTAC	3 cut(s)	556, 781, 954
RseI	CAYNNNNRTG	4 cut(s)	368, 459, 1085, 1564
SaqAI	TTAA	5 cut(s)	603, 935, 1229, 1374, 1542
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	4 cut(s)	310, 510, 1407, 1455
Sau96I	GGNCC	2 cut(s)	622, 887
SchI	GAGTC	2 cut(s)	577, 851
ScrFI	CCNGG	2 cut(s)	690, 1097
SduI	GDGCHC	2 cut(s)	674, 1187
SfaNI	GCATC	3 cut(s)	233, 747, 1216
SfcI	CTRYAG	1 cut(s)	1215
SfuI	TTCGAA	1 cut(s)	1038
SinI	GGWCC	2 cut(s)	622, 887
SmiMI	CAYNNNNRTG	4 cut(s)	368, 459, 1085, 1564
SmlI	CTYRAG	2 cut(s)	425, 654
SmoI	CTYRAG	2 cut(s)	425, 654
SpeI	ACTAGT	1 cut(s)	1327
Sse9I	AATT	9 cut(s)	419, 728, 882, 931, 1246, 1347, 1516, 1526, 1551
SsiI	CCGC	3 cut(s)	4, 337, 1267
SspMI	CTAG	4 cut(s)	209, 350, 596, 1328
StyD4I	CCNGG	2 cut(s)	688, 1095
StyI	CCWWGG	2 cut(s)	181, 1178
TaaI	ACNGT	9 cut(s)	49, 370, 380, 530, 764, 823, 953, 1372, 1415
TaqI	TCGA	3 cut(s)	414, 678, 1038
TasI	AATT	9 cut(s)	419, 728, 882, 931, 1246, 1347, 1516, 1526, 1551
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	6 cut(s)	341, 409, 836, 1192, 1224, 1430
Tru1I	TTAA	5 cut(s)	603, 935, 1229, 1374, 1542
Tru9I	TTAA	5 cut(s)	603, 935, 1229, 1374, 1542
TscAI	CASTG	3 cut(s)	533, 828, 965
TseFI	GTSAC	3 cut(s)	40, 374, 1312
Tsp45I	GTSAC	3 cut(s)	40, 374, 1312
TspDTI	ATGAA	8 cut(s)	230, 477, 796, 985, 990, 1069, 1131, 1519
TspRI	CASTG	3 cut(s)	533, 828, 965
Tth111I	GACNNNGTC	1 cut(s)	1310
VpaK11BI	GGWCC	2 cut(s)	622, 887
XagI	CCTNNNNNAGG	1 cut(s)	180
XapI	RAATTY	4 cut(s)	728, 1246, 1516, 1551
XceI	RCATGY	2 cut(s)	443, 1125
XmnI	GAANNNNTTC	1 cut(s)	1551
XspI	CTAG	4 cut(s)	209, 350, 596, 1328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.