Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002191

Physical Location & Seq

Genomic Coordinates Reverse (-)

33705357 .. 33707324

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00411180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGAGGTCAATCACCCAAAGCCTCATGCAATCATGGAGCAAATACTTGGAACCATGGAGGCCAATCACCCAAAGCCTCATGCAATCATGGTACCTGTTCCTCTCCAAGGCCATGTCAACCCCTTCACCCATTTGGCCATGAACCTTGCATCAAATGGCTTCACCATCACTTTTGTCAACACTCAATACATTCATCACCAGATAACCAAATCCAAAACCAAAAACAACACTACACAAGAGCAAGATCAAGATGACATCTTTGCGGCGGCGCGTGAGTCCGGCCTTGACATACGCTATAGAACAGTGAGTGACGCTTTCCCACTGTCCTTCAATCGGTTTCAGAACAGTGACCAATTTCTTGAGGGTAGTATCCATGTCTTCCCTGCCCATGTTGATGAACTTGTTGGAGATTTAGTACAATCTGACCCCTCAATCAATTGTTTGATTGCTGACACCTTCTACACATGGCCGTTGATGATAGCCAACAAGTACAACCTTATCAATATCTCCTTCTGGACTGAACCAGCTTTAGTGTTAAACATTTACTACCACTTGGACCTCCTCATAAAACATGGTCATTTTGGTTGTCATGATAATTGTGAGGACACCATAGATTACATACCTGGTGTGCAGGCTATTGAACCAAAGGATTTGATGTCACACCTGTACATTACTGATACCTCAGCTCCGATGCTGCGAATCGTTAAGAAGGCGTTCCGCGAAGTTAAGAGGGCAGATTTTATACTGTGTAATACAGTGCAAGAACTTGAAGCAGAGTCTCTTTCAGCCTTGCAAGACAAGCAACCTACATATGCAATTGGCCCTGTCTTCCCCAGTAAACCCACCAAGAATGTTGTGGCTACTAATCTGATGTCCGAGATTGACTGTACACAATGGCTCAAGACCAAGCCTCAAGGTTCAGTTTTGTATGTTTCATTTGGTAGTTATTGTCAGGTTACTAAGAATGAGTTTGAGGAAATAGCTCAGGGGCTTTTGCTTAGTAAAGTGAATTTCATTTGGGTACTACGCCCTGACACTATAAGCTATGACGAAGAAAGGTATATTGTTCCCTTTGGATTGGAAGACCAGAGCGATAGAGGGTTAATGGTGCCTTGGTGTTCTCAGGTTGAGGTGCTCTCAAATCCAGCAATAGGAGGGTTCTTAACTCATTGTGGATGGAATTCCATACTGGAAAGTATGTGGTTTGGTGTTCCAATGCTGTGTTTTCCAATTGAAACTGACCAAATCACTAATAGGAAACTAGTGGTTGATGATTGGAGGATTGGTCTCAATCTTTGTGACAGGAAGCCAATCACAAGGTTGGAGGTAGCACAGAAGGTCAACCGTCTGATGAGTGGAAATTTGGGTGATGGAATATTGCAGAAGGAGATCAAGAAGGCAAAGCAGACATTGGAGGATGCTTTGGCTACAGATGGGTCATCACAACAGAGTTTCGGCCGATTTATTAGTGACGTGAAGGCTAAAATTCAAACACGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

500

Amino Acids

56.56

Weight (kDa)

5.59

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	29 - 73	2.4e-06	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	305 - 427	1.5e-17	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36970
fragaria_vesca	FvH4_6g16230 FvH4_6g16230 FvH4_6g16250
malus_domestica	MD12G1114000.v1.1 MD12G1114100.v1.1 MD12G1114200.v1.1
prunus_persica	Prupe.6G233100_v2.0.a1 Prupe.6G233200_v2.0.a1 Prupe.6G233300_v2.0.a1 Prupe.6G233400_v2.0.a1 Prupe.6G233500_v2.0.a1 Prupe.6G233600_v2.0.a1 Prupe.6G233600_v2.0.a1
pyrus_communis	pycom12g11320 pycom12g11330 pycom12g11340
rosa_chinensis	RchiOBHm_Chr3g0470071 RchiOBHm_Chr3g0470101 RchiOBHm_Chr3g0470111
rosa_laevigata	RLG00000024296 RLG00000024298 RLG00000024299
rosa_multiflora	Rmu_sc0005600.1_g000011 Rmu_sc0005600.1_g000012 Rmu_sc0009114.1_g000016
rosa_roxburghii	Rroxscaffold_6G00411170 Rroxscaffold_6G00411180 Rroxscaffold_6G00411200
rosa_rugosa	Rorug03G0106700 Rorug03G0106700
rosa_samantha	Rh3AG155900 Rh3AG156200 Rh3BG180100 Rh3BG180200 Rh3CG170600 Rh3CG171000 Rh3DG195100
rosa_wichuraiana	Rw3G014680 Rw3G014690 Rw3G014700 Rw3G014760 Rw3G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	91
AccB1I	GGYRCC	2 cut(s)	91, 1108
AccII	CGCG	2 cut(s)	271, 720
AciI	CCGC	3 cut(s)	263, 266, 718
AcoI	YGGCCR	3 cut(s)	135, 467, 1456
AcsI	RAATTY	4 cut(s)	1009, 1180, 1360, 1485
AfaI	GTAC	6 cut(s)	93, 417, 491, 668, 889, 1023
AfiI	CCNNNNNNNGG	3 cut(s)	107, 333, 1151
AgsI	TTSAA	5 cut(s)	331, 641, 770, 1235, 1490
AhlI	ACTAGT	1 cut(s)	1261
AjiI	CACGTC	1 cut(s)	1474
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	4 cut(s)	527, 686, 983, 1044
AluI	AGCT	4 cut(s)	527, 686, 983, 1044
Alw21I	GWGCWC	1 cut(s)	1137
Alw26I	GTCTC	2 cut(s)	783, 1292
AoxI	GGCC	7 cut(s)	60, 109, 135, 280, 467, 820, 1456
ApeKI	GCWGC	1 cut(s)	694
ApoI	RAATTY	4 cut(s)	1009, 1180, 1360, 1485
Asp700I	GAANNNNTTC	1 cut(s)	713
Asp718I	GGTACC	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	2 cut(s)	556, 821
AsuHPI	GGTGA	6 cut(s)	5, 59, 118, 154, 188, 1379
AvaII	GGWCC	1 cut(s)	556
BalI	TGGCCA	1 cut(s)	137
BanI	GGYRCC	2 cut(s)	91, 1108
BbsI	GAAGAC	3 cut(s)	370, 820, 1089
Bbv12I	GWGCWC	1 cut(s)	1137
BbvCI	CCTCAGC	1 cut(s)	682
BbvI	GCAGC	1 cut(s)	681
BccI	CCATC	4 cut(s)	173, 1170, 1364, 1427
BceAI	ACGGC	1 cut(s)	454
BciT130I	CCWGG	1 cut(s)	624
BciVI	GTATCC	1 cut(s)	380
BcoDI	GTCTC	2 cut(s)	783, 1292
BcuI	ACTAGT	1 cut(s)	1261
BfaI	CTAG	1 cut(s)	1262
BfmI	CTRYAG	2 cut(s)	295, 1428
BfuI	GTATCC	1 cut(s)	380
BisI	GCNGC	3 cut(s)	264, 267, 695
BlsI	GCNGC	3 cut(s)	265, 268, 696
Bme1390I	CCNGG	1 cut(s)	624
Bme18I	GGWCC	1 cut(s)	556
BmgBI	CACGTC	1 cut(s)	1474
BmgT120I	GGNCC	2 cut(s)	556, 821
BmiI	GGNNCC	3 cut(s)	52, 93, 1110
BmrFI	CCNGG	1 cut(s)	624
BmrI	ACTGGG	1 cut(s)	828
BmsI	GCATC	3 cut(s)	158, 681, 1408
BmuI	ACTGGG	1 cut(s)	828
BpiI	GAAGAC	3 cut(s)	370, 820, 1089
BplI	GAGNNNNNCTC	2 cut(s)	1121, 1153
Bpu10I	CCTNAGC	2 cut(s)	682, 984
BpuEI	CTTGAG	3 cut(s)	380, 884, 897
BsaI	GGTCTC	1 cut(s)	1292
BsaJI	CCNNGG	3 cut(s)	54, 106, 1112
BsaXI	ACNNNNNCTCC	6 cut(s)	399, 429, 670, 700, 1270, 1300
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 333, 1151
Bse1I	ACTGG	2 cut(s)	834, 1194
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	3 cut(s)	54, 106, 1112
BseGI	GGATG	2 cut(s)	1181, 1423
BseLI	CCNNNNNNNGG	3 cut(s)	107, 333, 1151
BseMII	CTCAG	3 cut(s)	696, 998, 1136
BseNI	ACTGG	2 cut(s)	834, 1194
BseRI	GAGGAG	1 cut(s)	551
BseX3I	CGGCCG	1 cut(s)	1456
BseXI	GCAGC	1 cut(s)	681
BsgI	GTGCAG	1 cut(s)	650
Bsh1236I	CGCG	2 cut(s)	271, 720
Bsh1285I	CGRYCG	1 cut(s)	1459
BshFI	GGCC	7 cut(s)	62, 111, 137, 282, 469, 822, 1458
BshNI	GGYRCC	2 cut(s)	91, 1108
BsiEI	CGRYCG	1 cut(s)	1459
BsiHKAI	GWGCWC	1 cut(s)	1137
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	3 cut(s)	107, 333, 1151
BsmAI	GTCTC	2 cut(s)	783, 1292
BsnI	GGCC	7 cut(s)	62, 111, 137, 282, 469, 822, 1458
Bso31I	GGTCTC	1 cut(s)	1292
Bsp1286I	GDGCHC	1 cut(s)	1137
Bsp1407I	TGTACA	2 cut(s)	666, 887
Bsp143I	GATC	2 cut(s)	244, 1389
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	3 cut(s)	263, 266, 718
BspANI	GGCC	7 cut(s)	62, 111, 137, 282, 469, 822, 1458
BspCNI	CTCAG	3 cut(s)	695, 997, 1135
BspFNI	CGCG	2 cut(s)	271, 720
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	3 cut(s)	52, 93, 1110
BspT107I	GGYRCC	2 cut(s)	91, 1108
BspTNI	GGTCTC	1 cut(s)	1292
BsrGI	TGTACA	2 cut(s)	666, 887
BsrI	ACTGG	2 cut(s)	834, 1194
BssECI	CCNNGG	3 cut(s)	54, 106, 1112
BssMI	GATC	2 cut(s)	244, 1389
BssT1I	CCWWGG	3 cut(s)	54, 106, 1112
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	7 cut(s)	304, 324, 347, 747, 757, 887, 1346
BstAUI	TGTACA	2 cut(s)	666, 887
BstC8I	GCNNGC	1 cut(s)	633
BstDEI	CTNAG	5 cut(s)	682, 960, 984, 998, 1122
BstDSI	CCRYGG	1 cut(s)	54
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	1181, 1423
BstFNI	CGCG	2 cut(s)	271, 720
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	2 cut(s)	247, 1392
BstMAI	GTCTC	2 cut(s)	783, 1292
BstMBI	GATC	2 cut(s)	244, 1389
BstMCI	CGRYCG	1 cut(s)	1459
BstMWI	GCNNNNNNNGC	1 cut(s)	799
BstNI	CCWGG	1 cut(s)	624
BstSCI	CCNGG	1 cut(s)	622
BstSFI	CTRYAG	2 cut(s)	295, 1428
BstUI	CGCG	2 cut(s)	271, 720
BstV1I	GCAGC	1 cut(s)	681
BstV2I	GAAGAC	3 cut(s)	370, 820, 1089
BstZI	CGGCCG	1 cut(s)	1456
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	7 cut(s)	62, 111, 137, 282, 469, 822, 1458
BtgI	CCRYGG	1 cut(s)	54
BtrI	CACGTC	1 cut(s)	1474
BtsCI	GGATG	2 cut(s)	1181, 1423
BtsIMutI	CAGTG	4 cut(s)	309, 320, 352, 762
Cac8I	GCNNGC	1 cut(s)	633
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	556, 821
CseI	GACGC	1 cut(s)	320
CsiI	ACCWGGT	1 cut(s)	622
Csp6I	GTAC	6 cut(s)	92, 416, 490, 667, 888, 1022
CviQI	GTAC	6 cut(s)	92, 416, 490, 667, 888, 1022
DdeI	CTNAG	5 cut(s)	682, 960, 984, 998, 1122
DpnI	GATC	2 cut(s)	246, 1391
DpnII	GATC	2 cut(s)	244, 1389
EaeI	YGGCCR	3 cut(s)	135, 467, 1456
EagI	CGGCCG	1 cut(s)	1456
EclXI	CGGCCG	1 cut(s)	1456
Eco130I	CCWWGG	3 cut(s)	54, 106, 1112
Eco31I	GGTCTC	1 cut(s)	1292
Eco47I	GGWCC	1 cut(s)	556
Eco52I	CGGCCG	1 cut(s)	1456
EcoNI	CCTNNNNNAGG	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	1180
EcoRII	CCWGG	1 cut(s)	622
EcoT14I	CCWWGG	3 cut(s)	54, 106, 1112
ErhI	CCWWGG	3 cut(s)	54, 106, 1112
FauNDI	CATATG	1 cut(s)	811
Fnu4HI	GCNGC	3 cut(s)	264, 267, 695
FokI	GGATG	2 cut(s)	1188, 1430
Fsp4HI	GCNGC	3 cut(s)	264, 267, 695
FspBI	CTAG	1 cut(s)	1262
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	3 cut(s)	264, 267, 695
HaeIII	GGCC	7 cut(s)	62, 111, 137, 282, 469, 822, 1458
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	3 cut(s)	118, 178, 1342
HindII	GTYRAC	3 cut(s)	118, 178, 1342
HinfI	GANTC	3 cut(s)	275, 699, 776
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	6 cut(s)	5, 59, 118, 154, 188, 1379
Hpy166II	GTNNAC	5 cut(s)	118, 178, 839, 890, 1342
Hpy188I	TCNGA	6 cut(s)	342, 424, 690, 870, 877, 1350
Hpy188III	TCNNGA	6 cut(s)	248, 359, 514, 590, 901, 1393
Hpy8I	GTNNAC	5 cut(s)	118, 178, 839, 890, 1342
HpyAV	CCTTC	9 cut(s)	133, 337, 466, 520, 703, 1330, 1378, 1390, 1471
HpyCH4III	ACNGT	7 cut(s)	304, 324, 347, 747, 757, 887, 1346
HpyCH4IV	ACGT	1 cut(s)	1473
HpyCH4V	TGCA	8 cut(s)	29, 83, 149, 631, 760, 793, 815, 1381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	799
HpyF3I	CTNAG	5 cut(s)	682, 960, 984, 998, 1122
HpySE526I	ACGT	1 cut(s)	1473
HspAI	GCGC	1 cut(s)	269
KpnI	GGTACC	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	244, 1389
LmnI	GCTCC	2 cut(s)	37, 691
Lsp1109I	GCAGC	1 cut(s)	681
LweI	GCATC	3 cut(s)	158, 681, 1408
MabI	ACCWGGT	1 cut(s)	622
MaeI	CTAG	1 cut(s)	1262
MaeII	ACGT	1 cut(s)	1473
MaeIII	GTNAC	6 cut(s)	308, 347, 657, 955, 1298, 1469
MalI	GATC	2 cut(s)	246, 1391
MboI	GATC	2 cut(s)	244, 1389
MboII	GAAGA	4 cut(s)	370, 820, 1064, 1094
MfeI	CAATTG	3 cut(s)	436, 816, 1230
MhlI	GDGCHC	1 cut(s)	1137
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	9 cut(s)	353, 436, 595, 816, 1009, 1180, 1230, 1360, 1485
MluNI	TGGCCA	1 cut(s)	137
MlyI	GAGTC	2 cut(s)	284, 785
MmeI	TCCRAC	2 cut(s)	385, 1302
Mox20I	TGGCCA	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	713
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	5 cut(s)	536, 705, 726, 1103, 1163
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	137
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	624
MunI	CAATTG	3 cut(s)	436, 816, 1230
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	2 cut(s)	271, 720
MwoI	GCNNNNNNNGC	1 cut(s)	799
NcoI	CCATGG	1 cut(s)	54
NdeI	CATATG	1 cut(s)	811
NdeII	GATC	2 cut(s)	244, 1389
NlaIV	GGNNCC	3 cut(s)	52, 93, 1110
NmuCI	GTSAC	5 cut(s)	308, 347, 657, 1298, 1469
PagI	TCATGA	1 cut(s)	589
PdmI	GAANNNNTTC	1 cut(s)	713
PfeI	GAWTC	1 cut(s)	699
PkrI	GCNGC	3 cut(s)	265, 268, 696
PleI	GAGTC	2 cut(s)	283, 784
PpsI	GAGTC	2 cut(s)	283, 784
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	3 cut(s)	52, 93, 1110
PspPI	GGNCC	2 cut(s)	556, 821
RsaI	GTAC	6 cut(s)	93, 417, 491, 668, 889, 1023
RsaNI	GTAC	6 cut(s)	92, 416, 490, 667, 888, 1022
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	5 cut(s)	536, 705, 726, 1103, 1163
SatI	GCNGC	3 cut(s)	264, 267, 695
Sau3AI	GATC	2 cut(s)	244, 1389
Sau96I	GGNCC	2 cut(s)	556, 821
SchI	GAGTC	2 cut(s)	284, 785
ScrFI	CCNGG	1 cut(s)	624
SduI	GDGCHC	1 cut(s)	1137
SexAI	ACCWGGT	1 cut(s)	622
SfaNI	GCATC	3 cut(s)	158, 681, 1408
SfcI	CTRYAG	2 cut(s)	295, 1428
SinI	GGWCC	1 cut(s)	556
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	3 cut(s)	359, 899, 912
SmoI	CTYRAG	3 cut(s)	359, 899, 912
SpeI	ACTAGT	1 cut(s)	1261
Sse9I	AATT	9 cut(s)	353, 436, 595, 816, 1009, 1180, 1230, 1360, 1485
SsiI	CCGC	3 cut(s)	263, 266, 718
SspI	AATATT	1 cut(s)	1377
SspMI	CTAG	1 cut(s)	1262
StyD4I	CCNGG	1 cut(s)	622
StyI	CCWWGG	3 cut(s)	54, 106, 1112
TaaI	ACNGT	7 cut(s)	304, 324, 347, 747, 757, 887, 1346
TaiI	ACGT	1 cut(s)	1476
TasI	AATT	9 cut(s)	353, 436, 595, 816, 1009, 1180, 1230, 1360, 1485
TatI	WGTACW	4 cut(s)	415, 489, 666, 887
TauI	GCSGC	2 cut(s)	266, 269
TfiI	GAWTC	1 cut(s)	699
Tru1I	TTAA	5 cut(s)	536, 705, 726, 1103, 1163
Tru9I	TTAA	5 cut(s)	536, 705, 726, 1103, 1163
TscAI	CASTG	4 cut(s)	309, 327, 352, 762
TseFI	GTSAC	5 cut(s)	308, 347, 657, 1298, 1469
TseI	GCWGC	1 cut(s)	694
Tsp45I	GTSAC	5 cut(s)	308, 347, 657, 1298, 1469
TspDTI	ATGAA	5 cut(s)	155, 182, 411, 924, 1003
TspRI	CASTG	4 cut(s)	309, 327, 352, 762
VpaK11BI	GGWCC	1 cut(s)	556
XagI	CCTNNNNNAGG	1 cut(s)	105
XapI	RAATTY	4 cut(s)	1009, 1180, 1360, 1485
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XmnI	GAANNNNTTC	1 cut(s)	713
XspI	CTAG	1 cut(s)	1262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.