Rroxscaffold_6G00411200

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002191
Physical Location & Seq
Forward (+)
33719166 .. 33721598
2433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411200.1

Sequence Viewer

Length: 1476 bp
ATGGAGAACAATCACCCAAAGCCTCATGCTGTTCTATTTCCCTACCCTCTCCAAGGCCATGTAATCCCAGCGGTCCATCTCGCAATCAAGCTCGCATCAAACGGCTTCACAGTCACTTTTGTCAACACTCAGGCAGTCCACCACCAAATAATCAAGTCCCAAAGTCCCGATAACGCCATAGAAGACGACGTTAACATCTTCAACGGGGTGTGTAAATCAAGCCTTGACATACGTTATGCAACAATCAGCGACGGTTTTCCTATTGGATTCGACCGATCCCTCAACCACGACCAGTTTTGGGAAGGTGTTCTGCATGTTTTCCCACCTCATGTGGATGAACTTGTAGCAAAACTAGTCCGATCCGACCCACCGGTCACTTGCTTGATAGCAGACACTTTCTTTGTGTGGCCAACAATGATGGCAACAAAGTATAACCTTGTGAATGTGTCATTTTGGACCGAACCTGTTCTGGTCTTAACCCTCTACTACCATATATACCTCCTCAGAGAAAATGGTCACTTTGCTTCTCGTGATAATCATCGCAAAGATACAATCGACTACATTCCAGGTGTGAAAGCAATTGAACCAAAAGACTTGATGTCATACCTTCAAGCTACTGAGGTCACATCCGTAGAACACAGGATCATATTCAAGGCATTTGAGGAAGTTAAAAGGGCAGATTTCATTCTTTGTAACACAGTTCAAGAGCTTGAATCAGATACCATATCTGCCTTGCAAGAAAAGCAACCTACATATGCAATCGGCCCTATTTTTCCCAATGGGTTCACGAAGAGCACCGTGGCCACGAGTCTCTGGTCCGAATCTGACTGTATCGAATGGCTAAACACTAAACCGCATGGTTCAATCCTCTATGTCTCATTTGGTAGCTATGCGCATGCAAGTAAAAAGGACATAGAGGAAATAGCTAATGGGCTTTCGTTAAGCAAAGTCGGCTTTATTTGGGCTCTTCGGCCCGATATTGTCAGCTCCAACGAGACCCAAATCCTACCCATTGGATTCGAAGACGAGATCAAGAATAGAGGGTTGATCGTGCCATGGTGTAGTCAAATTGAAGTCATCTCACACCCCGCAATCGGAGGGTTCTTAACACATTGCGGATGGAATTCAATACTGGAAAGTATATGGTGTGGTCTGCCATTGTTGTGTTATCCATTGTTGACCGACCAATTCACCAATCGGAAACTAGTGGTCGACGATTGGGGGGTCGGGATTAACCTCTGTGATCGGAAACCGATCACAAGGGAGGAGGTGAAAGAGAAGGTGAACCGTTTAATTAGTGGAAAGTCAAGTGAGGAGTTGAGGAGGAATGTGAATGAGGTCAAGAACACATTGGAGAATGCATTGGATAAAGATGGTTCATCAAACAGAAACTTCAATCGACTCATAGATGACATGAAGGCTAAAATCCAAGAGAAACATGGGCTTGTCTTCAAAGCATTAAATGGCAATCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

491

Amino Acids

55.45

Weight (kDa)

5.91

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 286 - 437 1.7e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 371
Acc16I TGCGCA 1 cut(s) 894
AccI GTMKAC 1 cut(s) 1212
AciI CCGC 4 cut(s) 71, 854, 1089, 1116
AclWI GGATC 3 cut(s) 270, 354, 650
AcoI YGGCCR 2 cut(s) 407, 801
AcsI RAATTY 1 cut(s) 1123
AfiI CCNNNNNNNGG 3 cut(s) 53, 298, 1094
AgeI ACCGGT 1 cut(s) 370
AhdI GACNNNNNGTC 1 cut(s) 598
AhlI ACTAGT 2 cut(s) 352, 1204
AjnI CCWGG 1 cut(s) 565
AluBI AGCT 6 cut(s) 91, 614, 709, 888, 926, 987
AluI AGCT 6 cut(s) 91, 614, 709, 888, 926, 987
Alw21I GWGCWC 1 cut(s) 797
Alw26I GTCTC 3 cut(s) 815, 880, 989
AlwI GGATC 3 cut(s) 270, 354, 650
AoxI GGCC 5 cut(s) 55, 407, 763, 801, 971
ApoI RAATTY 1 cut(s) 1123
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AsiGI ACCGGT 1 cut(s) 370
Asp700I GAANNNNTTC 2 cut(s) 306, 465
AspLEI GCGC 1 cut(s) 895
AspS9I GGNCC 5 cut(s) 73, 456, 764, 816, 972
AsuHPI GGTGA 4 cut(s) 5, 1183, 1282, 1294
AsuII TTCGAA 1 cut(s) 1020
AvaII GGWCC 3 cut(s) 73, 456, 816
BalI TGGCCA 2 cut(s) 409, 803
BanII GRGCYC 1 cut(s) 967
BauI CACGAG 2 cut(s) 528, 805
BbsI GAAGAC 3 cut(s) 189, 1029, 1441
Bbv12I GWGCWC 1 cut(s) 797
BccI CCATC 4 cut(s) 84, 412, 1113, 1367
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 567
BcoDI GTCTC 3 cut(s) 815, 880, 989
BcuI ACTAGT 2 cut(s) 352, 1204
BfaI CTAG 3 cut(s) 353, 1205, 1474
Bme1390I CCNGG 1 cut(s) 567
Bme18I GGWCC 3 cut(s) 73, 456, 816
BmeRI GACNNNNNGTC 1 cut(s) 598
BmgT120I GGNCC 5 cut(s) 73, 456, 764, 816, 972
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 1 cut(s) 104
BpiI GAAGAC 3 cut(s) 189, 1029, 1441
Bpu14I TTCGAA 1 cut(s) 1020
BsaBI GATNNNNATC 1 cut(s) 537
BsaI GGTCTC 1 cut(s) 989
BsaJI CCNNGG 3 cut(s) 52, 798, 1055
BsaWI WCCGGW 1 cut(s) 370
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 298, 1094
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 2 cut(s) 292, 1137
Bse3DI GCAATG 1 cut(s) 1111
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 3 cut(s) 52, 798, 1055
BseGI GGATG 3 cut(s) 340, 626, 1124
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 3 cut(s) 53, 298, 1094
BseMI GCAATG 1 cut(s) 1111
BseMII CTCAG 3 cut(s) 143, 517, 609
BseNI ACTGG 2 cut(s) 292, 1137
BseRI GAGGAG 4 cut(s) 491, 1280, 1328, 1336
BseYI CCCAGC 1 cut(s) 67
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 5 cut(s) 57, 409, 765, 803, 973
BshTI ACCGGT 1 cut(s) 370
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 797
BsiSI CCGG 1 cut(s) 371
BslFI GGGAC 2 cut(s) 142, 150
BslI CCNNNNNNNGG 3 cut(s) 53, 298, 1094
BsmAI GTCTC 3 cut(s) 815, 880, 989
BsmFI GGGAC 2 cut(s) 142, 150
BsmI GAATGC 1 cut(s) 1363
BsnI GGCC 5 cut(s) 57, 409, 765, 803, 973
Bso31I GGTCTC 1 cut(s) 989
Bsp119I TTCGAA 1 cut(s) 1020
Bsp1286I GDGCHC 2 cut(s) 797, 967
Bsp143I GATC 7 cut(s) 275, 359, 642, 1029, 1047, 1243, 1254
Bsp19I CCATGG 1 cut(s) 1055
BspACI CCGC 4 cut(s) 71, 854, 1089, 1116
BspANI GGCC 5 cut(s) 57, 409, 765, 803, 973
BspCNI CTCAG 3 cut(s) 142, 516, 610
BspPI GGATC 3 cut(s) 270, 354, 650
BspQI GCTCTTC 2 cut(s) 785, 972
BspT104I TTCGAA 1 cut(s) 1020
BspTNI GGTCTC 1 cut(s) 989
BsrDI GCAATG 1 cut(s) 1111
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 2 cut(s) 292, 1137
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 3 cut(s) 52, 798, 1055
BssMI GATC 7 cut(s) 275, 359, 642, 1029, 1047, 1243, 1254
BssSI CACGAG 2 cut(s) 528, 805
BssT1I CCWWGG 2 cut(s) 52, 1055
Bst2BI CACGAG 2 cut(s) 528, 805
Bst2UI CCWGG 1 cut(s) 567
Bst4CI ACNGT 6 cut(s) 112, 254, 700, 799, 830, 1289
Bst6I CTCTTC 2 cut(s) 785, 972
BstBI TTCGAA 1 cut(s) 1020
BstC8I GCNNGC 2 cut(s) 93, 897
BstDEI CTNAG 3 cut(s) 129, 503, 618
BstDSI CCRYGG 2 cut(s) 798, 1055
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 340, 626, 1124
BstHHI GCGC 1 cut(s) 895
BstKTI GATC 7 cut(s) 278, 362, 645, 1032, 1050, 1246, 1257
BstMAI GTCTC 3 cut(s) 815, 880, 989
BstMBI GATC 7 cut(s) 275, 359, 642, 1029, 1047, 1243, 1254
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 2 cut(s) 742, 951
BstNI CCWGG 1 cut(s) 567
BstNSI RCATGY 2 cut(s) 317, 899
BstSCI CCNGG 1 cut(s) 565
BstV2I GAAGAC 3 cut(s) 189, 1029, 1441
BsuRI GGCC 5 cut(s) 57, 409, 765, 803, 973
BtgI CCRYGG 2 cut(s) 798, 1055
BtgZI GCGATG 1 cut(s) 524
BtsCI GGATG 3 cut(s) 340, 626, 1124
Cac8I GCNNGC 2 cut(s) 93, 897
CfoI GCGC 1 cut(s) 895
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 5 cut(s) 73, 456, 764, 816, 972
CspAI ACCGGT 1 cut(s) 370
CviAII CATG 9 cut(s) 26, 59, 314, 329, 857, 896, 1056, 1414, 1439
DdeI CTNAG 3 cut(s) 129, 503, 618
DpnI GATC 7 cut(s) 277, 361, 644, 1031, 1049, 1245, 1256
DpnII GATC 7 cut(s) 275, 359, 642, 1029, 1047, 1243, 1254
DrdI GACNNNNNNGTC 1 cut(s) 371
DriI GACNNNNNGTC 1 cut(s) 598
DseDI GACNNNNNNGTC 1 cut(s) 371
EaeI YGGCCR 2 cut(s) 407, 801
Eam1104I CTCTTC 2 cut(s) 785, 972
Eam1105I GACNNNNNGTC 1 cut(s) 598
EarI CTCTTC 2 cut(s) 785, 972
Eco130I CCWWGG 2 cut(s) 52, 1055
Eco24I GRGCYC 1 cut(s) 967
Eco31I GGTCTC 1 cut(s) 989
Eco47I GGWCC 3 cut(s) 73, 456, 816
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 1123
EcoRII CCWGG 1 cut(s) 565
EcoT14I CCWWGG 2 cut(s) 52, 1055
EcoT22I ATGCAT 1 cut(s) 1363
EcoT38I GRGCYC 1 cut(s) 967
ErhI CCWWGG 2 cut(s) 52, 1055
FaeI CATG 9 cut(s) 29, 62, 317, 332, 860, 899, 1059, 1417, 1442
FaqI GGGAC 2 cut(s) 142, 150
FatI CATG 9 cut(s) 25, 58, 313, 328, 856, 895, 1055, 1413, 1438
FauI CCCGC 1 cut(s) 1096
FauNDI CATATG 1 cut(s) 754
FblI GTMKAC 1 cut(s) 1212
FokI GGATG 3 cut(s) 347, 613, 1131
FriOI GRGCYC 1 cut(s) 967
FspAI RTGCGCAY 1 cut(s) 894
FspBI CTAG 3 cut(s) 353, 1205, 1474
FspI TGCGCA 1 cut(s) 894
GlaI GCGC 1 cut(s) 894
GsaI CCCAGC 1 cut(s) 71
HaeIII GGCC 5 cut(s) 57, 409, 765, 803, 973
HapII CCGG 1 cut(s) 371
HhaI GCGC 1 cut(s) 895
Hin1II CATG 9 cut(s) 29, 62, 317, 332, 860, 899, 1059, 1417, 1442
Hin6I GCGC 1 cut(s) 893
HinP1I GCGC 1 cut(s) 893
HincII GTYRAC 4 cut(s) 124, 193, 1179, 1213
HindII GTYRAC 4 cut(s) 124, 193, 1179, 1213
HinfI GANTC 6 cut(s) 267, 713, 808, 821, 1017, 1401
HpaI GTTAAC 1 cut(s) 193
HpaII CCGG 1 cut(s) 371
HphI GGTGA 4 cut(s) 5, 1183, 1282, 1294
Hpy166II GTNNAC 7 cut(s) 124, 139, 193, 786, 1179, 1213, 1285
Hpy188I TCNGA 9 cut(s) 359, 364, 506, 718, 820, 826, 1097, 1200, 1248
Hpy188III TCNNGA 7 cut(s) 167, 530, 704, 787, 1033, 1228, 1342
Hpy8I GTNNAC 7 cut(s) 124, 139, 193, 786, 1179, 1213, 1285
Hpy99I CGWCG 3 cut(s) 191, 254, 1217
HpyAV CCTTC 4 cut(s) 296, 617, 1273, 1411
HpyCH4III ACNGT 6 cut(s) 112, 254, 700, 799, 830, 1289
HpyCH4IV ACGT 2 cut(s) 189, 232
HpyCH4V TGCA 6 cut(s) 239, 313, 736, 758, 899, 1361
HpyF10VI GCNNNNNNNGC 2 cut(s) 742, 951
HpyF3I CTNAG 3 cut(s) 129, 503, 618
HpySE526I ACGT 2 cut(s) 189, 232
Hsp92II CATG 9 cut(s) 29, 62, 317, 332, 860, 899, 1059, 1417, 1442
HspAI GCGC 1 cut(s) 893
KspAI GTTAAC 1 cut(s) 193
Kzo9I GATC 7 cut(s) 275, 359, 642, 1029, 1047, 1243, 1254
LguI GCTCTTC 2 cut(s) 785, 972
LmnI GCTCC 1 cut(s) 992
LweI GCATC 1 cut(s) 104
MaeI CTAG 3 cut(s) 353, 1205, 1474
MaeII ACGT 2 cut(s) 189, 232
MaeIII GTNAC 5 cut(s) 112, 373, 515, 622, 692
MalI GATC 7 cut(s) 277, 361, 644, 1031, 1049, 1245, 1256
MboI GATC 7 cut(s) 275, 359, 642, 1029, 1047, 1243, 1254
MboII GAAGA 6 cut(s) 190, 194, 802, 959, 1034, 1441
MfeI CAATTG 1 cut(s) 579
MhlI GDGCHC 2 cut(s) 797, 967
MlsI TGGCCA 2 cut(s) 409, 803
MluCI AATT 5 cut(s) 579, 1068, 1123, 1187, 1293
MluNI TGGCCA 2 cut(s) 409, 803
MlyI GAGTC 2 cut(s) 817, 1395
MmeI TCCRAC 2 cut(s) 387, 1014
Mox20I TGGCCA 2 cut(s) 409, 803
Mph1103I ATGCAT 1 cut(s) 1363
MroXI GAANNNNTTC 2 cut(s) 306, 465
MscI TGGCCA 2 cut(s) 409, 803
MseI TTAA 8 cut(s) 192, 476, 669, 941, 1106, 1233, 1292, 1460
MslI CAYNNNNRTG 2 cut(s) 333, 1162
Msp20I TGGCCA 2 cut(s) 409, 803
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 567
MunI CAATTG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 1363
MvaI CCWGG 1 cut(s) 567
MwoI GCNNNNNNNGC 2 cut(s) 742, 951
NcoI CCATGG 1 cut(s) 1055
NdeI CATATG 1 cut(s) 754
NdeII GATC 7 cut(s) 275, 359, 642, 1029, 1047, 1243, 1254
NlaIII CATG 9 cut(s) 29, 62, 317, 332, 860, 899, 1059, 1417, 1442
NmuCI GTSAC 4 cut(s) 112, 373, 515, 622
NsbI TGCGCA 1 cut(s) 894
NsiI ATGCAT 1 cut(s) 1363
NspI RCATGY 2 cut(s) 317, 899
NspV TTCGAA 1 cut(s) 1020
PaeI GCATGC 1 cut(s) 899
PciSI GCTCTTC 2 cut(s) 785, 972
PctI GAATGC 1 cut(s) 1363
PdmI GAANNNNTTC 2 cut(s) 306, 465
PfeI GAWTC 4 cut(s) 267, 713, 821, 1017
PinAI ACCGGT 1 cut(s) 370
PleI GAGTC 2 cut(s) 816, 1395
PpsI GAGTC 2 cut(s) 816, 1395
Psp6I CCWGG 1 cut(s) 565
PspFI CCCAGC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 565
PspPI GGNCC 5 cut(s) 73, 456, 764, 816, 972
RseI CAYNNNNRTG 2 cut(s) 333, 1162
SalI GTCGAC 1 cut(s) 1211
SapI GCTCTTC 2 cut(s) 785, 972
SaqAI TTAA 8 cut(s) 192, 476, 669, 941, 1106, 1233, 1292, 1460
Sau3AI GATC 7 cut(s) 275, 359, 642, 1029, 1047, 1243, 1254
Sau96I GGNCC 5 cut(s) 73, 456, 764, 816, 972
SchI GAGTC 2 cut(s) 817, 1395
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 2 cut(s) 797, 967
SfaNI GCATC 1 cut(s) 104
SfuI TTCGAA 1 cut(s) 1020
SinI GGWCC 3 cut(s) 73, 456, 816
SmiMI CAYNNNNRTG 2 cut(s) 333, 1162
SpeI ACTAGT 2 cut(s) 352, 1204
SphI GCATGC 1 cut(s) 899
Sse9I AATT 5 cut(s) 579, 1068, 1123, 1187, 1293
SsiI CCGC 4 cut(s) 71, 854, 1089, 1116
SspMI CTAG 3 cut(s) 353, 1205, 1474
StyD4I CCNGG 1 cut(s) 565
StyI CCWWGG 2 cut(s) 52, 1055
TaaI ACNGT 6 cut(s) 112, 254, 700, 799, 830, 1289
TaiI ACGT 2 cut(s) 192, 235
TaqI TCGA 6 cut(s) 270, 555, 834, 1020, 1212, 1399
TaqII GACCGA 3 cut(s) 288, 473, 1196
TasI AATT 5 cut(s) 579, 1068, 1123, 1187, 1293
TfiI GAWTC 4 cut(s) 267, 713, 821, 1017
Tru1I TTAA 8 cut(s) 192, 476, 669, 941, 1106, 1233, 1292, 1460
Tru9I TTAA 8 cut(s) 192, 476, 669, 941, 1106, 1233, 1292, 1460
TseFI GTSAC 4 cut(s) 112, 373, 515, 622
Tsp45I GTSAC 4 cut(s) 112, 373, 515, 622
TspDTI ATGAA 4 cut(s) 351, 673, 1368, 1430
TspGWI ACGGA 1 cut(s) 619
VpaK11BI GGWCC 3 cut(s) 73, 456, 816
XagI CCTNNNNNAGG 1 cut(s) 51
XapI RAATTY 1 cut(s) 1123
XceI RCATGY 2 cut(s) 317, 899
XcmI CCANNNNNNNNNTGG 1 cut(s) 1436
XmiI GTMKAC 1 cut(s) 1212
XmnI GAANNNNTTC 2 cut(s) 306, 465
XspI CTAG 3 cut(s) 353, 1205, 1474
Zsp2I ATGCAT 1 cut(s) 1363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.