Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002191

Physical Location & Seq

Genomic Coordinates Forward (+)

15883198 .. 15885133

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG180100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGAGGCCAATCACCCAAAGCCACATGCAATCATGGTACCTGTTCCTCTCCAAGGCCATGTCAACCCCTTCACCCACTTGGCCGTGAACCTTGCATCAAATGGCTTCACCATCACTTTTGTCAACACTCAATACATTCATCACCAGATAACCAAATCCAAAACAAAAAACAACACTACACAAGAGCAAGATCAAGATCAAGATCAAGATCAAGATGACATCTTTGCAGCGGCGCGTGAGTCCGGCCTTGACATACGCTATAGAACAGTGAGCGATGCTTTCCCACTGCCCTTCAATCGGTTTCAGAACAGTGACCAATTTCTTGAGGGTAGTATCCATGTCTTCCCTGCCCATGTTGATGAACTTGTTGGAGATTTAGTACAATCTGACCCCTCAATCAATTGTTTGATTGCTGACACCTTCTACACATGGCCACTGATGATAGCCAACAAGTACAACCTTATCAATATCTCCTTCTGGACTGAACCAGCTTTAGTCTTAAACATTTACTACCACTTGGACCTCCTCATAAAACATGGTCATTTTGGTTGTCATGATAATTGTGAGGACACCATAGATTACATACCTGGTGTGCAGGCTATTGAACCAAAGGATTTGATGTCACACCTGTACATTACTGATACCTCAGCTCCGATGCTGCGAATCATTAAGAAGGCGTTCCGCGAAGTTAAGAGGGCAGATTTTATACTGTGTAATACAGTGCAAGTACTTGAAGCAGAGTCTCTTTCAGCCTTGCAAGACAAGCAACCTACATATGCAATTGGCCCTGTCTTCCCCACTGAACCCACCAAGAATGTTGTGGCTACTAATCTGATGTCCGAGATTGACTGTACACAATGGCTCAAGACCAAGCCTCAAGGTTCAGTTTTGTATGTTTCATTTGGTAGCTATTGTCAGGTTACTAAGAATGAGTTTGAGGAAATAGCTCAGGGGCTTTTGCTTAGTAAAGTGAATTTCATTTGGGTACTACGCCCTGACACTATAAGCTATGACAAAGAAAGGTATATTGTTCCCTTTGGATTGGAAGACCAGAGCGATAGAGGGTTAATGGTGCCTTGGTGTTCTCAGGTTGAGGTGCTCTCAAATCCAGCGATAGGAGGGTTCTTAACTCATTGTGGATGGAATTCCATACTGGAAAGTATGTGGTTTGGTGTTCCAATGCTGTGTTTTCCTATTGAAACTGACCAAATCACTAATAGGAAACTAGTGGTTGATGATTGGAGGATTGGTCTCAATCTTTGTGACAGGAAGCCAATCACAAGGTTGGAGGTAGCACAGAAGGTCAACCGTCTGATGGGTGGAAATTTGGGTGAGCGACTATTGCAGAAGGAGATCAAGAAGGCAAAGCAGACATTGGAGGAAGCTTTGGCTGCAGATGGGTCATCACAACAGAGTTTCCGCCGATTTATTAGTGATGTTCCACTTGAGCACTGCCTTGAAAAGTTCAGTTCATATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

493

Amino Acids

56.03

Weight (kDa)

5.29

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	11 - 55	3.6e-06	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	293 - 415	1.9e-17	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36970
fragaria_vesca	FvH4_6g16230 FvH4_6g16230 FvH4_6g16250
malus_domestica	MD12G1114000.v1.1 MD12G1114100.v1.1 MD12G1114200.v1.1
prunus_persica	Prupe.6G233100_v2.0.a1 Prupe.6G233200_v2.0.a1 Prupe.6G233300_v2.0.a1 Prupe.6G233400_v2.0.a1 Prupe.6G233500_v2.0.a1 Prupe.6G233600_v2.0.a1 Prupe.6G233600_v2.0.a1
pyrus_communis	pycom12g11320 pycom12g11330 pycom12g11340
rosa_chinensis	RchiOBHm_Chr3g0470071 RchiOBHm_Chr3g0470101 RchiOBHm_Chr3g0470111
rosa_laevigata	RLG00000024296 RLG00000024298 RLG00000024299
rosa_multiflora	Rmu_sc0005600.1_g000011 Rmu_sc0005600.1_g000012 Rmu_sc0009114.1_g000016
rosa_roxburghii	Rroxscaffold_6G00411170 Rroxscaffold_6G00411180 Rroxscaffold_6G00411200
rosa_rugosa	Rorug03G0106700 Rorug03G0106700
rosa_samantha	Rh3AG155900 Rh3AG156200 Rh3BG180100 Rh3BG180200 Rh3CG170600 Rh3CG171000 Rh3DG195100
rosa_wichuraiana	Rw3G014680 Rw3G014690 Rw3G014700 Rw3G014760 Rw3G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	37
AccB1I	GGYRCC	2 cut(s)	37, 1072
AccII	CGCG	2 cut(s)	235, 684
AciI	CCGC	3 cut(s)	230, 682, 1420
AcoI	YGGCCR	2 cut(s)	81, 431
AcsI	RAATTY	3 cut(s)	973, 1144, 1324
AfaI	GTAC	7 cut(s)	39, 381, 455, 632, 729, 853, 987
AfiI	CCNNNNNNNGG	4 cut(s)	53, 297, 1115, 1315
AgsI	TTSAA	5 cut(s)	295, 605, 734, 1199, 1460
AhlI	ACTAGT	1 cut(s)	1225
AjnI	CCWGG	1 cut(s)	586
AluBI	AGCT	6 cut(s)	491, 650, 909, 947, 1008, 1385
AluI	AGCT	6 cut(s)	491, 650, 909, 947, 1008, 1385
Alw21I	GWGCWC	2 cut(s)	1101, 1452
Alw26I	GTCTC	2 cut(s)	747, 1256
AoxI	GGCC	6 cut(s)	6, 55, 81, 244, 431, 784
ApeKI	GCWGC	3 cut(s)	227, 658, 1391
ApoI	RAATTY	3 cut(s)	973, 1144, 1324
Asp700I	GAANNNNTTC	1 cut(s)	677
Asp718I	GGTACC	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	2 cut(s)	520, 785
AsuHPI	GGTGA	5 cut(s)	5, 64, 100, 134, 1343
AvaII	GGWCC	1 cut(s)	520
BalI	TGGCCA	1 cut(s)	433
BanI	GGYRCC	2 cut(s)	37, 1072
BbsI	GAAGAC	3 cut(s)	334, 784, 1053
Bbv12I	GWGCWC	2 cut(s)	1101, 1452
BbvCI	CCTCAGC	1 cut(s)	646
BbvI	GCAGC	3 cut(s)	239, 645, 1378
BccI	CCATC	4 cut(s)	119, 1134, 1309, 1391
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	588
BciVI	GTATCC	1 cut(s)	344
BcoDI	GTCTC	2 cut(s)	747, 1256
BcuI	ACTAGT	1 cut(s)	1225
BfaI	CTAG	1 cut(s)	1226
BfmI	CTRYAG	2 cut(s)	259, 1392
BfuI	GTATCC	1 cut(s)	344
BisI	GCNGC	4 cut(s)	228, 231, 659, 1392
BlsI	GCNGC	4 cut(s)	229, 232, 660, 1393
BmcAI	AGTACT	1 cut(s)	729
Bme1390I	CCNGG	1 cut(s)	588
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	2 cut(s)	520, 785
BmiI	GGNNCC	2 cut(s)	39, 1074
BmrFI	CCNGG	1 cut(s)	588
BmsI	GCATC	3 cut(s)	104, 265, 645
BpiI	GAAGAC	3 cut(s)	334, 784, 1053
BplI	GAGNNNNNCTC	2 cut(s)	1085, 1117
Bpu10I	CCTNAGC	2 cut(s)	646, 948
BpuEI	CTTGAG	4 cut(s)	344, 848, 861, 1466
BsaBI	GATNNNNATC	3 cut(s)	195, 201, 207
BsaI	GGTCTC	1 cut(s)	1256
BsaJI	CCNNGG	2 cut(s)	52, 1076
BsaXI	ACNNNNNCTCC	6 cut(s)	363, 393, 634, 664, 1234, 1264
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 297, 1115, 1315
Bse1I	ACTGG	1 cut(s)	1158
Bse8I	GATNNNNATC	3 cut(s)	195, 201, 207
BseBI	CCWGG	1 cut(s)	588
BseDI	CCNNGG	2 cut(s)	52, 1076
BseGI	GGATG	1 cut(s)	1145
BseJI	GATNNNNATC	3 cut(s)	195, 201, 207
BseLI	CCNNNNNNNGG	4 cut(s)	53, 297, 1115, 1315
BseMII	CTCAG	3 cut(s)	660, 962, 1100
BseNI	ACTGG	1 cut(s)	1158
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	3 cut(s)	239, 645, 1378
BsgI	GTGCAG	1 cut(s)	614
Bsh1236I	CGCG	2 cut(s)	235, 684
BshFI	GGCC	6 cut(s)	8, 57, 83, 246, 433, 786
BshNI	GGYRCC	2 cut(s)	37, 1072
BsiHKAI	GWGCWC	2 cut(s)	1101, 1452
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	4 cut(s)	53, 297, 1115, 1315
BsmAI	GTCTC	2 cut(s)	747, 1256
BsnI	GGCC	6 cut(s)	8, 57, 83, 246, 433, 786
Bso31I	GGTCTC	1 cut(s)	1256
Bsp1286I	GDGCHC	2 cut(s)	1101, 1452
Bsp1407I	TGTACA	2 cut(s)	630, 851
Bsp143I	GATC	5 cut(s)	190, 196, 202, 208, 1353
BspACI	CCGC	3 cut(s)	230, 682, 1420
BspANI	GGCC	6 cut(s)	8, 57, 83, 246, 433, 786
BspCNI	CTCAG	3 cut(s)	659, 961, 1099
BspFNI	CGCG	2 cut(s)	235, 684
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	39, 1074
BspMAI	CTGCAG	1 cut(s)	1396
BspT107I	GGYRCC	2 cut(s)	37, 1072
BspTNI	GGTCTC	1 cut(s)	1256
BsrGI	TGTACA	2 cut(s)	630, 851
BsrI	ACTGG	1 cut(s)	1158
BssECI	CCNNGG	2 cut(s)	52, 1076
BssMI	GATC	5 cut(s)	190, 196, 202, 208, 1353
BssT1I	CCWWGG	2 cut(s)	52, 1076
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	6 cut(s)	268, 311, 711, 721, 851, 1310
BstAUI	TGTACA	2 cut(s)	630, 851
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	5 cut(s)	646, 924, 948, 962, 1086
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	1145
BstFNI	CGCG	2 cut(s)	235, 684
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	5 cut(s)	193, 199, 205, 211, 1356
BstMAI	GTCTC	2 cut(s)	747, 1256
BstMBI	GATC	5 cut(s)	190, 196, 202, 208, 1353
BstMWI	GCNNNNNNNGC	3 cut(s)	763, 1342, 1391
BstNI	CCWGG	1 cut(s)	588
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	586
BstSFI	CTRYAG	2 cut(s)	259, 1392
BstUI	CGCG	2 cut(s)	235, 684
BstV1I	GCAGC	3 cut(s)	239, 645, 1378
BstV2I	GAAGAC	3 cut(s)	334, 784, 1053
BsuI	GTATCC	1 cut(s)	344
BsuRI	GGCC	6 cut(s)	8, 57, 83, 246, 433, 786
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	1145
BtsI	GCAGTG	2 cut(s)	284, 1450
BtsIMutI	CAGTG	7 cut(s)	273, 284, 316, 434, 726, 798, 1450
Cac8I	GCNNGC	1 cut(s)	597
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	520, 785
CsiI	ACCWGGT	1 cut(s)	586
Csp6I	GTAC	7 cut(s)	38, 380, 454, 631, 728, 852, 986
CviAII	CATG	8 cut(s)	26, 34, 59, 338, 353, 429, 536, 554
CviQI	GTAC	7 cut(s)	38, 380, 454, 631, 728, 852, 986
DdeI	CTNAG	5 cut(s)	646, 924, 948, 962, 1086
DpnI	GATC	5 cut(s)	192, 198, 204, 210, 1355
DpnII	GATC	5 cut(s)	190, 196, 202, 208, 1353
EaeI	YGGCCR	2 cut(s)	81, 431
EciI	GGCGGA	1 cut(s)	1409
Eco130I	CCWWGG	2 cut(s)	52, 1076
Eco31I	GGTCTC	1 cut(s)	1256
Eco47I	GGWCC	1 cut(s)	520
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	1144
EcoRII	CCWGG	1 cut(s)	586
EcoT14I	CCWWGG	2 cut(s)	52, 1076
ErhI	CCWWGG	2 cut(s)	52, 1076
FaeI	CATG	8 cut(s)	29, 37, 62, 341, 356, 432, 539, 557
FatI	CATG	8 cut(s)	25, 33, 58, 337, 352, 428, 535, 553
FauNDI	CATATG	2 cut(s)	775, 1474
Fnu4HI	GCNGC	4 cut(s)	228, 231, 659, 1392
FokI	GGATG	1 cut(s)	1152
Fsp4HI	GCNGC	4 cut(s)	228, 231, 659, 1392
FspBI	CTAG	1 cut(s)	1226
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	4 cut(s)	228, 231, 659, 1392
HaeIII	GGCC	6 cut(s)	8, 57, 83, 246, 433, 786
HapII	CCGG	1 cut(s)	243
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	8 cut(s)	29, 37, 62, 341, 356, 432, 539, 557
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HincII	GTYRAC	3 cut(s)	64, 124, 1306
HindII	GTYRAC	3 cut(s)	64, 124, 1306
HindIII	AAGCTT	1 cut(s)	1383
HinfI	GANTC	3 cut(s)	239, 663, 740
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	5 cut(s)	5, 64, 100, 134, 1343
Hpy166II	GTNNAC	5 cut(s)	64, 88, 124, 854, 1306
Hpy188I	TCNGA	6 cut(s)	306, 388, 654, 834, 841, 1314
Hpy188III	TCNNGA	9 cut(s)	194, 200, 206, 212, 323, 478, 554, 865, 1357
Hpy8I	GTNNAC	5 cut(s)	64, 88, 124, 854, 1306
HpyAV	CCTTC	8 cut(s)	79, 301, 430, 484, 667, 1294, 1342, 1354
HpyCH4III	ACNGT	6 cut(s)	268, 311, 711, 721, 851, 1310
HpyCH4V	TGCA	9 cut(s)	29, 95, 227, 595, 724, 757, 779, 1345, 1394
HpyF10VI	GCNNNNNNNGC	3 cut(s)	763, 1342, 1391
HpyF3I	CTNAG	5 cut(s)	646, 924, 948, 962, 1086
Hsp92II	CATG	8 cut(s)	29, 37, 62, 341, 356, 432, 539, 557
HspAI	GCGC	1 cut(s)	233
KpnI	GGTACC	1 cut(s)	41
Kzo9I	GATC	5 cut(s)	190, 196, 202, 208, 1353
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	3 cut(s)	239, 645, 1378
LweI	GCATC	3 cut(s)	104, 265, 645
MabI	ACCWGGT	1 cut(s)	586
MaeI	CTAG	1 cut(s)	1226
MaeIII	GTNAC	4 cut(s)	311, 621, 919, 1262
MalI	GATC	5 cut(s)	192, 198, 204, 210, 1355
MboI	GATC	5 cut(s)	190, 196, 202, 208, 1353
MboII	GAAGA	3 cut(s)	334, 784, 1058
MfeI	CAATTG	2 cut(s)	400, 780
MhlI	GDGCHC	2 cut(s)	1101, 1452
MlsI	TGGCCA	1 cut(s)	433
MluCI	AATT	7 cut(s)	317, 400, 559, 780, 973, 1144, 1324
MluNI	TGGCCA	1 cut(s)	433
MlyI	GAGTC	2 cut(s)	248, 749
MmeI	TCCRAC	2 cut(s)	349, 1266
Mox20I	TGGCCA	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	677
MscI	TGGCCA	1 cut(s)	433
MseI	TTAA	5 cut(s)	500, 669, 690, 1067, 1127
MslI	CAYNNNNRTG	2 cut(s)	357, 1477
Msp20I	TGGCCA	1 cut(s)	433
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	588
MunI	CAATTG	2 cut(s)	400, 780
MvaI	CCWGG	1 cut(s)	588
MvnI	CGCG	2 cut(s)	235, 684
MwoI	GCNNNNNNNGC	3 cut(s)	763, 1342, 1391
NdeI	CATATG	2 cut(s)	775, 1474
NdeII	GATC	5 cut(s)	190, 196, 202, 208, 1353
NlaIII	CATG	8 cut(s)	29, 37, 62, 341, 356, 432, 539, 557
NlaIV	GGNNCC	2 cut(s)	39, 1074
NmuCI	GTSAC	3 cut(s)	311, 621, 1262
NspI	RCATGY	1 cut(s)	29
PagI	TCATGA	1 cut(s)	553
PdmI	GAANNNNTTC	1 cut(s)	677
PfeI	GAWTC	1 cut(s)	663
PkrI	GCNGC	4 cut(s)	229, 232, 660, 1393
PleI	GAGTC	2 cut(s)	247, 748
PpsI	GAGTC	2 cut(s)	247, 748
Psp6I	CCWGG	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	2 cut(s)	39, 1074
PspPI	GGNCC	2 cut(s)	520, 785
PstI	CTGCAG	1 cut(s)	1396
RsaI	GTAC	7 cut(s)	39, 381, 455, 632, 729, 853, 987
RsaNI	GTAC	7 cut(s)	38, 380, 454, 631, 728, 852, 986
RseI	CAYNNNNRTG	2 cut(s)	357, 1477
SaqAI	TTAA	5 cut(s)	500, 669, 690, 1067, 1127
SatI	GCNGC	4 cut(s)	228, 231, 659, 1392
Sau3AI	GATC	5 cut(s)	190, 196, 202, 208, 1353
Sau96I	GGNCC	2 cut(s)	520, 785
ScaI	AGTACT	1 cut(s)	729
SchI	GAGTC	2 cut(s)	248, 749
ScrFI	CCNGG	1 cut(s)	588
SduI	GDGCHC	2 cut(s)	1101, 1452
SexAI	ACCWGGT	1 cut(s)	586
SfaNI	GCATC	3 cut(s)	104, 265, 645
SfcI	CTRYAG	2 cut(s)	259, 1392
SinI	GGWCC	1 cut(s)	520
SmiMI	CAYNNNNRTG	2 cut(s)	357, 1477
SmlI	CTYRAG	4 cut(s)	323, 863, 876, 1445
SmoI	CTYRAG	4 cut(s)	323, 863, 876, 1445
SpeI	ACTAGT	1 cut(s)	1225
Sse9I	AATT	7 cut(s)	317, 400, 559, 780, 973, 1144, 1324
SsiI	CCGC	3 cut(s)	230, 682, 1420
SspMI	CTAG	1 cut(s)	1226
StyD4I	CCNGG	1 cut(s)	586
StyI	CCWWGG	2 cut(s)	52, 1076
TaaI	ACNGT	6 cut(s)	268, 311, 711, 721, 851, 1310
TasI	AATT	7 cut(s)	317, 400, 559, 780, 973, 1144, 1324
TatI	WGTACW	5 cut(s)	379, 453, 630, 727, 851
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	663
Tru1I	TTAA	5 cut(s)	500, 669, 690, 1067, 1127
Tru9I	TTAA	5 cut(s)	500, 669, 690, 1067, 1127
TscAI	CASTG	7 cut(s)	273, 291, 316, 441, 726, 805, 1457
TseFI	GTSAC	3 cut(s)	311, 621, 1262
TseI	GCWGC	3 cut(s)	227, 658, 1391
Tsp45I	GTSAC	3 cut(s)	311, 621, 1262
TspDTI	ATGAA	5 cut(s)	128, 375, 888, 967, 1461
TspRI	CASTG	7 cut(s)	273, 291, 316, 441, 726, 805, 1457
VpaK11BI	GGWCC	1 cut(s)	520
XagI	CCTNNNNNAGG	1 cut(s)	51
XapI	RAATTY	3 cut(s)	973, 1144, 1324
XceI	RCATGY	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	817
XmnI	GAANNNNTTC	1 cut(s)	677
XspI	CTAG	1 cut(s)	1226
ZrmI	AGTACT	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.