Rroxscaffold_6G00411170

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002191
Physical Location & Seq
Reverse (-)
33698972 .. 33701118
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411170.1

Sequence Viewer

Length: 1458 bp
ATGGAGGCCAATCACCTAAAGCCTCATGCAATCATGGTACCTGTTTCTCTCCAAGGCCATGTCAACCCCTTCACCCAATTGGCCATGAACCTTGCATCAAATGGCTTCACCATCACTTTTGTCAACACTCAATACATCCATCACCAGATAACCAGATCCAAACCCAAGAACAACACTACACAAGAGCAAGAGCAAGATCAAGATGACATCTTTGCGGCGGCGCGTGAGTCCGGCCTTGACATACGCTATAGAACAGTGAGTGATGCTTTCCCACTGTCCTTCAATCGGTTTCAGAACCTTGACCAATTTCTTGAGGGCTATATCCATGTCTTCCCTGCCCATGTTGATGAACTTGTTGGAGATTTGGTACAGTCTGACCCCTCAATCAATTGTTTGATTAGCCAACACACCTTCTACACATGGCCGGTGATGATAGCCAACAAGTACAACCTTATCAATATCTCCTTCTGGACTGAACCAGCTTTAGTCTTAAACATTTACTACCACTTGGACCTCCTCATAAAACATGGTCATTTTGGTTGTCATGATAATTGTGAGGACACCATAGATTACATACCTGGTGTGCAGGCTATTGAACCAAAGGATTTGATGTCACACCTGTACATTACTGATACCTCAGCTCCGATGCTGCGAATCGTTAAGAAGGCGTTCCGCGAAGTTAAGAGGGCAGATTTTATACTGTGTAATACAGTGCAAGAACTTGAAGCAGAGTCTCTTTCAGCCTTGCAAGACAAGCAACCTACATATGCAATTGGCCCTGTCTTCCCCAGTAAACCCACCAAGAATGTGGTGGCTACTAATCTGATGTCCGAGATTGACTGTACACAATGGCTCAAGACCAAGCCTCAAGGTTCAGTTTTGTATGTTTCATTTGGTAGCTATTGTCAACTTACTAAGAATGAGTTTGAGGAAATAGCTCAGGGGCTTTTGCTTAGTAAAGTGAATTTCATTTGGGTACTACGCCCTGACACTATAAGCTATGACAAAGAAAGGTATATTGTTCCCTTTGGATTGGAAGACCAGAGCGATAGAGGGTTAATGGTGCCTTGGTGTTCTCAGATTGAGGTGCTCTCAAATCCAGCAATAGGAGGGTTCTTAACTCATTGTGGATGGAATTCCATACTGGAAAGTATGTGGTTTGGTGTTCCAATGCTGTGTTTTCCTATTGAAACTGACCAAATCACTAATAGGAAACTAGTGGTTGATGATTGGAGGATTGGTCTCAATCTTTGTGACAGGAAGCCAATCACAAGGTTGGAGGTAGCACAGAAGGTCAACCGTCTGATGAGTGGAACTTTGGGTGATGGAATATTGCAGAAGGATATCAAGAACGCAAAGCAGACATTGGAGGATGCTTTGGCTGCAGATGGGTCATCACAACAGAGTTTCCGCCGATTTATTAGTGACGTGAAGGCTAAAATTCAAACACGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

485

Amino Acids

55.12

Weight (kDa)

5.71

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 290 - 412 4.2e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 37
AccB1I GGYRCC 2 cut(s) 37, 1063
AccII CGCG 2 cut(s) 223, 675
AciI CCGC 4 cut(s) 215, 218, 673, 1411
AclWI GGATC 1 cut(s) 150
AcoI YGGCCR 2 cut(s) 81, 422
AcsI RAATTY 3 cut(s) 964, 1135, 1440
AfaI GTAC 6 cut(s) 39, 369, 446, 623, 844, 978
AfiI CCNNNNNNNGG 2 cut(s) 285, 1106
AgsI TTSAA 5 cut(s) 283, 596, 725, 1190, 1445
AhlI ACTAGT 1 cut(s) 1216
AjiI CACGTC 1 cut(s) 1429
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 5 cut(s) 482, 641, 900, 938, 999
AluI AGCT 5 cut(s) 482, 641, 900, 938, 999
Alw21I GWGCWC 1 cut(s) 1092
Alw26I GTCTC 2 cut(s) 738, 1247
AlwI GGATC 1 cut(s) 150
AoxI GGCC 6 cut(s) 6, 55, 81, 232, 422, 775
ApeKI GCWGC 2 cut(s) 649, 1382
ApoI RAATTY 3 cut(s) 964, 1135, 1440
Asp700I GAANNNNTTC 1 cut(s) 668
Asp718I GGTACC 1 cut(s) 37
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 2 cut(s) 511, 776
AsuHPI GGTGA 6 cut(s) 5, 64, 100, 134, 439, 1334
AvaII GGWCC 1 cut(s) 511
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 2 cut(s) 37, 1063
BbsI GAAGAC 3 cut(s) 322, 775, 1044
Bbv12I GWGCWC 1 cut(s) 1092
BbvCI CCTCAGC 1 cut(s) 637
BbvI GCAGC 2 cut(s) 636, 1369
BccI CCATC 5 cut(s) 119, 147, 1125, 1319, 1382
BciT130I CCWGG 1 cut(s) 579
BcoDI GTCTC 2 cut(s) 738, 1247
BcuI ACTAGT 1 cut(s) 1216
BfaI CTAG 1 cut(s) 1217
BfmI CTRYAG 2 cut(s) 247, 1383
BisI GCNGC 4 cut(s) 216, 219, 650, 1383
BlsI GCNGC 4 cut(s) 217, 220, 651, 1384
Bme1390I CCNGG 1 cut(s) 579
Bme18I GGWCC 1 cut(s) 511
BmgBI CACGTC 1 cut(s) 1429
BmgT120I GGNCC 2 cut(s) 511, 776
BmiI GGNNCC 2 cut(s) 39, 1065
BmrFI CCNGG 1 cut(s) 579
BmrI ACTGGG 1 cut(s) 783
BmsI GCATC 4 cut(s) 104, 253, 636, 1363
BmuI ACTGGG 1 cut(s) 783
BpiI GAAGAC 3 cut(s) 322, 775, 1044
BplI GAGNNNNNCTC 2 cut(s) 1076, 1108
Bpu10I CCTNAGC 2 cut(s) 637, 939
BpuEI CTTGAG 3 cut(s) 332, 839, 852
BsaI GGTCTC 1 cut(s) 1247
BsaJI CCNNGG 2 cut(s) 52, 1067
BsaXI ACNNNNNCTCC 6 cut(s) 351, 381, 625, 655, 1225, 1255
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 1106
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 2 cut(s) 789, 1149
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 2 cut(s) 52, 1067
BseGI GGATG 3 cut(s) 135, 1136, 1378
BseLI CCNNNNNNNGG 2 cut(s) 285, 1106
BseMII CTCAG 3 cut(s) 651, 953, 1091
BseNI ACTGG 2 cut(s) 789, 1149
BseRI GAGGAG 1 cut(s) 506
BseXI GCAGC 2 cut(s) 636, 1369
BsgI GTGCAG 1 cut(s) 605
Bsh1236I CGCG 2 cut(s) 223, 675
BshFI GGCC 6 cut(s) 8, 57, 83, 234, 424, 777
BshNI GGYRCC 2 cut(s) 37, 1063
BsiHKAI GWGCWC 1 cut(s) 1092
BsiSI CCGG 2 cut(s) 231, 425
BslI CCNNNNNNNGG 2 cut(s) 285, 1106
BsmAI GTCTC 2 cut(s) 738, 1247
BsnI GGCC 6 cut(s) 8, 57, 83, 234, 424, 777
Bso31I GGTCTC 1 cut(s) 1247
Bsp1286I GDGCHC 1 cut(s) 1092
Bsp1407I TGTACA 2 cut(s) 621, 842
Bsp143I GATC 2 cut(s) 155, 196
BspACI CCGC 4 cut(s) 215, 218, 673, 1411
BspANI GGCC 6 cut(s) 8, 57, 83, 234, 424, 777
BspCNI CTCAG 3 cut(s) 650, 952, 1090
BspFNI CGCG 2 cut(s) 223, 675
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 2 cut(s) 39, 1065
BspMAI CTGCAG 1 cut(s) 1387
BspPI GGATC 1 cut(s) 150
BspT107I GGYRCC 2 cut(s) 37, 1063
BspTNI GGTCTC 1 cut(s) 1247
BsrFI RCCGGY 1 cut(s) 424
BsrGI TGTACA 2 cut(s) 621, 842
BsrI ACTGG 2 cut(s) 789, 1149
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 2 cut(s) 52, 1067
BssMI GATC 2 cut(s) 155, 196
BssT1I CCWWGG 2 cut(s) 52, 1067
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 7 cut(s) 256, 276, 372, 702, 712, 842, 1301
BstAUI TGTACA 2 cut(s) 621, 842
BstC8I GCNNGC 1 cut(s) 588
BstDEI CTNAG 5 cut(s) 637, 915, 939, 953, 1077
BstF5I GGATG 3 cut(s) 135, 1136, 1378
BstFNI CGCG 2 cut(s) 223, 675
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 2 cut(s) 158, 199
BstMAI GTCTC 2 cut(s) 738, 1247
BstMBI GATC 2 cut(s) 155, 196
BstMWI GCNNNNNNNGC 2 cut(s) 754, 1382
BstNI CCWGG 1 cut(s) 579
BstSCI CCNGG 1 cut(s) 577
BstSFI CTRYAG 2 cut(s) 247, 1383
BstUI CGCG 2 cut(s) 223, 675
BstV1I GCAGC 2 cut(s) 636, 1369
BstV2I GAAGAC 3 cut(s) 322, 775, 1044
BstX2I RGATCY 1 cut(s) 155
BstXI CCANNNNNNTGG 1 cut(s) 808
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 6 cut(s) 8, 57, 83, 234, 424, 777
BtrI CACGTC 1 cut(s) 1429
BtsCI GGATG 3 cut(s) 135, 1136, 1378
BtsIMutI CAGTG 3 cut(s) 261, 272, 717
Cac8I GCNNGC 1 cut(s) 588
CciI TCATGA 1 cut(s) 544
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 2 cut(s) 511, 776
CsiI ACCWGGT 1 cut(s) 577
Csp6I GTAC 6 cut(s) 38, 368, 445, 622, 843, 977
CviAII CATG 9 cut(s) 26, 34, 59, 85, 326, 341, 420, 527, 545
CviQI GTAC 6 cut(s) 38, 368, 445, 622, 843, 977
DdeI CTNAG 5 cut(s) 637, 915, 939, 953, 1077
DpnI GATC 2 cut(s) 157, 198
DpnII GATC 2 cut(s) 155, 196
EaeI YGGCCR 2 cut(s) 81, 422
EciI GGCGGA 1 cut(s) 1400
Eco130I CCWWGG 2 cut(s) 52, 1067
Eco31I GGTCTC 1 cut(s) 1247
Eco32I GATATC 1 cut(s) 1345
Eco47I GGWCC 1 cut(s) 511
EcoRI GAATTC 1 cut(s) 1135
EcoRII CCWGG 1 cut(s) 577
EcoRV GATATC 1 cut(s) 1345
EcoT14I CCWWGG 2 cut(s) 52, 1067
ErhI CCWWGG 2 cut(s) 52, 1067
FaeI CATG 9 cut(s) 29, 37, 62, 88, 329, 344, 423, 530, 548
FatI CATG 9 cut(s) 25, 33, 58, 84, 325, 340, 419, 526, 544
FauNDI CATATG 1 cut(s) 766
Fnu4HI GCNGC 4 cut(s) 216, 219, 650, 1383
FokI GGATG 3 cut(s) 122, 1143, 1385
Fsp4HI GCNGC 4 cut(s) 216, 219, 650, 1383
FspBI CTAG 1 cut(s) 1217
GlaI GCGC 1 cut(s) 222
GluI GCNGC 4 cut(s) 216, 219, 650, 1383
HaeIII GGCC 6 cut(s) 8, 57, 83, 234, 424, 777
HapII CCGG 2 cut(s) 231, 425
HhaI GCGC 1 cut(s) 223
Hin1II CATG 9 cut(s) 29, 37, 62, 88, 329, 344, 423, 530, 548
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HincII GTYRAC 4 cut(s) 64, 124, 908, 1297
HindII GTYRAC 4 cut(s) 64, 124, 908, 1297
HinfI GANTC 3 cut(s) 227, 654, 731
HpaII CCGG 2 cut(s) 231, 425
HphI GGTGA 6 cut(s) 5, 64, 100, 134, 439, 1334
Hpy166II GTNNAC 6 cut(s) 64, 124, 794, 845, 908, 1297
Hpy188I TCNGA 7 cut(s) 294, 376, 645, 825, 832, 1080, 1305
Hpy188III TCNNGA 6 cut(s) 200, 311, 469, 545, 856, 1348
Hpy8I GTNNAC 6 cut(s) 64, 124, 794, 845, 908, 1297
HpyAV CCTTC 8 cut(s) 79, 289, 421, 475, 658, 1285, 1333, 1426
HpyCH4III ACNGT 7 cut(s) 256, 276, 372, 702, 712, 842, 1301
HpyCH4IV ACGT 1 cut(s) 1428
HpyCH4V TGCA 8 cut(s) 29, 95, 586, 715, 748, 770, 1336, 1385
HpyF10VI GCNNNNNNNGC 2 cut(s) 754, 1382
HpyF3I CTNAG 5 cut(s) 637, 915, 939, 953, 1077
HpySE526I ACGT 1 cut(s) 1428
Hsp92II CATG 9 cut(s) 29, 37, 62, 88, 329, 344, 423, 530, 548
HspAI GCGC 1 cut(s) 221
KpnI GGTACC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 155, 196
LmnI GCTCC 1 cut(s) 646
Lsp1109I GCAGC 2 cut(s) 636, 1369
LweI GCATC 4 cut(s) 104, 253, 636, 1363
MabI ACCWGGT 1 cut(s) 577
MaeI CTAG 1 cut(s) 1217
MaeII ACGT 1 cut(s) 1428
MaeIII GTNAC 3 cut(s) 612, 1253, 1424
MalI GATC 2 cut(s) 157, 198
MboI GATC 2 cut(s) 155, 196
MboII GAAGA 3 cut(s) 322, 775, 1049
MfeI CAATTG 3 cut(s) 77, 388, 771
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 1092
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 8 cut(s) 77, 305, 388, 550, 771, 964, 1135, 1440
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 2 cut(s) 236, 740
MmeI TCCRAC 2 cut(s) 337, 1257
Mox20I TGGCCA 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 668
MscI TGGCCA 1 cut(s) 83
MseI TTAA 5 cut(s) 491, 660, 681, 1058, 1118
MslI CAYNNNNRTG 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 2 cut(s) 231, 425
MspR9I CCNGG 1 cut(s) 579
MunI CAATTG 3 cut(s) 77, 388, 771
MvaI CCWGG 1 cut(s) 579
MvnI CGCG 2 cut(s) 223, 675
MwoI GCNNNNNNNGC 2 cut(s) 754, 1382
NdeI CATATG 1 cut(s) 766
NdeII GATC 2 cut(s) 155, 196
NlaIII CATG 9 cut(s) 29, 37, 62, 88, 329, 344, 423, 530, 548
NlaIV GGNNCC 2 cut(s) 39, 1065
NmuCI GTSAC 3 cut(s) 612, 1253, 1424
PagI TCATGA 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 668
PfeI GAWTC 1 cut(s) 654
PkrI GCNGC 4 cut(s) 217, 220, 651, 1384
PleI GAGTC 2 cut(s) 235, 739
PpsI GAGTC 2 cut(s) 235, 739
Psp6I CCWGG 1 cut(s) 577
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 2 cut(s) 39, 1065
PspPI GGNCC 2 cut(s) 511, 776
PstI CTGCAG 1 cut(s) 1387
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 6 cut(s) 39, 369, 446, 623, 844, 978
RsaNI GTAC 6 cut(s) 38, 368, 445, 622, 843, 977
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 5 cut(s) 491, 660, 681, 1058, 1118
SatI GCNGC 4 cut(s) 216, 219, 650, 1383
Sau3AI GATC 2 cut(s) 155, 196
Sau96I GGNCC 2 cut(s) 511, 776
SchI GAGTC 2 cut(s) 236, 740
ScrFI CCNGG 1 cut(s) 579
SduI GDGCHC 1 cut(s) 1092
SexAI ACCWGGT 1 cut(s) 577
SfaNI GCATC 4 cut(s) 104, 253, 636, 1363
SfcI CTRYAG 2 cut(s) 247, 1383
SinI GGWCC 1 cut(s) 511
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 3 cut(s) 311, 854, 867
SmoI CTYRAG 3 cut(s) 311, 854, 867
SpeI ACTAGT 1 cut(s) 1216
Sse9I AATT 8 cut(s) 77, 305, 388, 550, 771, 964, 1135, 1440
SsiI CCGC 4 cut(s) 215, 218, 673, 1411
SspI AATATT 1 cut(s) 1332
SspMI CTAG 1 cut(s) 1217
StyD4I CCNGG 1 cut(s) 577
StyI CCWWGG 2 cut(s) 52, 1067
TaaI ACNGT 7 cut(s) 256, 276, 372, 702, 712, 842, 1301
TaiI ACGT 1 cut(s) 1431
TasI AATT 8 cut(s) 77, 305, 388, 550, 771, 964, 1135, 1440
TatI WGTACW 3 cut(s) 444, 621, 842
TauI GCSGC 2 cut(s) 218, 221
TfiI GAWTC 1 cut(s) 654
Tru1I TTAA 5 cut(s) 491, 660, 681, 1058, 1118
Tru9I TTAA 5 cut(s) 491, 660, 681, 1058, 1118
TscAI CASTG 3 cut(s) 261, 279, 717
TseFI GTSAC 3 cut(s) 612, 1253, 1424
TseI GCWGC 2 cut(s) 649, 1382
Tsp45I GTSAC 3 cut(s) 612, 1253, 1424
TspDTI ATGAA 4 cut(s) 101, 363, 879, 958
TspRI CASTG 3 cut(s) 261, 279, 717
VpaK11BI GGWCC 1 cut(s) 511
XapI RAATTY 3 cut(s) 964, 1135, 1440
XcmI CCANNNNNNNNNTGG 2 cut(s) 805, 808
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 1 cut(s) 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.