Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005600.1

Orthogroup ID

OG0002191

Physical Location & Seq

Genomic Coordinates Forward (+)

47369 .. 49115

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005600.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

atggaggccaatcacccaaagcctcatgcaatcatggtacctctttctctccaaggccatgtcaaccccttcacccagttggccatgaaccttgcatcaaatggcttcaccatcacttttgtcaacactcaatacattcatcaccagataaccagatccaaaccgaagaacagcactacacaagagcaagatcaagatcaagatgacatctttgctgcggcgcgtgagtccggccttgacatacgctatagaacagtgaatgatgctttcccactgtccttcaatcggtttcagaaccttgaacaatttcttgagggctatatccatgtcttccctgcccatgttgatgaacttgttggggatttagtacagtctgacccctcaatcaattgtttgattgctgacaccttctacacatggccggtgatgatagccaacaagtacaaccttatcaatatctccttctggactgaaccagctttagtcttaaacatttactaccacttggacctcctcataaaacatggtcattttggttgtcatgataattgtgaggacaccatagattacatacctggtgtgcaggctattgaaccaaaggatttgatgtcacacctgtacattactgatacctcagctccgatgctgcgaatcgttaagaaggcgttccgcgaagttaagagggcagattttatactgtgtaatacagttcaagaacttgaagcagagtctctttcagccttgcaagacaagcaacctacatatgcaattggccccctcttccccagtgaacccaccaagaatgttgtggctactaatctgatgtccgagattgactgtacacaatggctcaaaaccaagcctcaaggttcagttttgtatgtttcatttggtagctattgtcaggttactaagaatgagtttgaggaaatagctcaggggcttttgcttagtaaagtgaatttcatttgggtactacgccctgacactataagctacgacgaagaaaggtatattgttccctttggattggaagaccagagcgatagagggttaatggtgccttggtgttctcaggttgaggtgctctcaaatccagcaataggagggttcttaactcattgtggatggaattccatactggaaagtatgtggtttggtgttccaatgctgtgttttcctattgaaactgaccaaatcactaataggaaactagtggttgatgattggaggattggtctcaatctttgtgacaggaagccaatcacaaggttggaggtagcacaaaaggtcaaccgtctgatgggtggaaatttgggtgatcgactattgcagaaggagatcaagaaggcaaagcagacattggaggaagctttggctgcagatgggtcatcacaacagagtttccaccgatttatcagtgacgtaaaggctaaaattcaaacacgcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

484

Amino Acids

55.05

Weight (kDa)

5.41

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36970
fragaria_vesca	FvH4_6g16230 FvH4_6g16230 FvH4_6g16250
malus_domestica	MD12G1114000.v1.1 MD12G1114100.v1.1 MD12G1114200.v1.1
prunus_persica	Prupe.6G233100_v2.0.a1 Prupe.6G233200_v2.0.a1 Prupe.6G233300_v2.0.a1 Prupe.6G233400_v2.0.a1 Prupe.6G233500_v2.0.a1 Prupe.6G233600_v2.0.a1 Prupe.6G233600_v2.0.a1
pyrus_communis	pycom12g11320 pycom12g11330 pycom12g11340
rosa_chinensis	RchiOBHm_Chr3g0470071 RchiOBHm_Chr3g0470101 RchiOBHm_Chr3g0470111
rosa_laevigata	RLG00000024296 RLG00000024298 RLG00000024299
rosa_multiflora	Rmu_sc0005600.1_g000011 Rmu_sc0005600.1_g000012 Rmu_sc0009114.1_g000016
rosa_roxburghii	Rroxscaffold_6G00411170 Rroxscaffold_6G00411180 Rroxscaffold_6G00411200
rosa_rugosa	Rorug03G0106700 Rorug03G0106700
rosa_samantha	Rh3AG155900 Rh3AG156200 Rh3BG180100 Rh3BG180200 Rh3CG170600 Rh3CG171000 Rh3DG195100
rosa_wichuraiana	Rw3G014680 Rw3G014690 Rw3G014700 Rw3G014760 Rw3G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	37
AccB1I	GGYRCC	2 cut(s)	37, 1060
AccII	CGCG	2 cut(s)	223, 672
AciI	CCGC	2 cut(s)	218, 670
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	2 cut(s)	81, 419
AcsI	RAATTY	4 cut(s)	961, 1132, 1312, 1437
AfaI	GTAC	6 cut(s)	39, 369, 443, 620, 841, 975
AfiI	CCNNNNNNNGG	3 cut(s)	285, 1103, 1303
AgsI	TTSAA	7 cut(s)	283, 302, 593, 713, 722, 1187, 1442
AhlI	ACTAGT	1 cut(s)	1213
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	6 cut(s)	479, 638, 897, 935, 996, 1373
AluI	AGCT	6 cut(s)	479, 638, 897, 935, 996, 1373
Alw21I	GWGCWC	1 cut(s)	1089
Alw26I	GTCTC	2 cut(s)	735, 1244
AlwI	GGATC	1 cut(s)	150
AoxI	GGCC	6 cut(s)	6, 55, 81, 232, 419, 772
ApeKI	GCWGC	3 cut(s)	215, 646, 1379
ApoI	RAATTY	4 cut(s)	961, 1132, 1312, 1437
Asp700I	GAANNNNTTC	2 cut(s)	306, 665
Asp718I	GGTACC	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	508, 773
AsuHPI	GGTGA	6 cut(s)	5, 64, 100, 134, 436, 1331
AvaII	GGWCC	1 cut(s)	508
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	37, 1060
BbsI	GAAGAC	2 cut(s)	322, 1041
Bbv12I	GWGCWC	1 cut(s)	1089
BbvCI	CCTCAGC	1 cut(s)	634
BbvI	GCAGC	3 cut(s)	202, 633, 1366
BccI	CCATC	4 cut(s)	119, 1122, 1297, 1379
BciT130I	CCWGG	1 cut(s)	576
BcoDI	GTCTC	2 cut(s)	735, 1244
BcuI	ACTAGT	1 cut(s)	1213
BfaI	CTAG	1 cut(s)	1214
BfmI	CTRYAG	2 cut(s)	247, 1380
BisI	GCNGC	4 cut(s)	216, 219, 647, 1380
BlsI	GCNGC	4 cut(s)	217, 220, 648, 1381
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	1 cut(s)	508
BmgT120I	GGNCC	2 cut(s)	508, 773
BmiI	GGNNCC	3 cut(s)	39, 775, 1062
BmrFI	CCNGG	1 cut(s)	576
BmrI	ACTGGG	2 cut(s)	70, 780
BmsI	GCATC	3 cut(s)	104, 253, 633
BmuI	ACTGGG	2 cut(s)	70, 780
BpiI	GAAGAC	2 cut(s)	322, 1041
BplI	GAGNNNNNCTC	2 cut(s)	1073, 1105
Bpu10I	CCTNAGC	2 cut(s)	634, 936
BpuEI	CTTGAG	2 cut(s)	332, 849
BsaBI	GATNNNNATC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	1244
BsaJI	CCNNGG	2 cut(s)	52, 1064
BsaXI	ACNNNNNCTCC	4 cut(s)	622, 652, 1222, 1252
Bsc4I	CCNNNNNNNGG	3 cut(s)	285, 1103, 1303
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	3 cut(s)	76, 786, 1146
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	52, 1064
BseGI	GGATG	1 cut(s)	1133
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	3 cut(s)	285, 1103, 1303
BseMII	CTCAG	3 cut(s)	648, 950, 1088
BseNI	ACTGG	3 cut(s)	76, 786, 1146
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	3 cut(s)	202, 633, 1366
BsgI	GTGCAG	1 cut(s)	602
Bsh1236I	CGCG	2 cut(s)	223, 672
BshFI	GGCC	6 cut(s)	8, 57, 83, 234, 421, 774
BshNI	GGYRCC	2 cut(s)	37, 1060
BsiHKAI	GWGCWC	1 cut(s)	1089
BsiSI	CCGG	2 cut(s)	231, 422
BslI	CCNNNNNNNGG	3 cut(s)	285, 1103, 1303
BsmAI	GTCTC	2 cut(s)	735, 1244
BsnI	GGCC	6 cut(s)	8, 57, 83, 234, 421, 774
Bso31I	GGTCTC	1 cut(s)	1244
Bsp1286I	GDGCHC	1 cut(s)	1089
Bsp1407I	TGTACA	2 cut(s)	618, 839
Bsp143I	GATC	5 cut(s)	155, 190, 196, 1321, 1341
BspACI	CCGC	2 cut(s)	218, 670
BspANI	GGCC	6 cut(s)	8, 57, 83, 234, 421, 774
BspCNI	CTCAG	3 cut(s)	647, 949, 1087
BspFNI	CGCG	2 cut(s)	223, 672
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	3 cut(s)	39, 775, 1062
BspMAI	CTGCAG	1 cut(s)	1384
BspPI	GGATC	1 cut(s)	150
BspT107I	GGYRCC	2 cut(s)	37, 1060
BspTNI	GGTCTC	1 cut(s)	1244
BsrFI	RCCGGY	1 cut(s)	421
BsrGI	TGTACA	2 cut(s)	618, 839
BsrI	ACTGG	3 cut(s)	76, 786, 1146
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	52, 1064
BssMI	GATC	5 cut(s)	155, 190, 196, 1321, 1341
BssT1I	CCWWGG	2 cut(s)	52, 1064
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	7 cut(s)	256, 276, 372, 699, 709, 839, 1298
Bst6I	CTCTTC	1 cut(s)	785
BstAUI	TGTACA	2 cut(s)	618, 839
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	5 cut(s)	634, 912, 936, 950, 1074
BstF5I	GGATG	1 cut(s)	1133
BstFNI	CGCG	2 cut(s)	223, 672
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	5 cut(s)	158, 193, 199, 1324, 1344
BstMAI	GTCTC	2 cut(s)	735, 1244
BstMBI	GATC	5 cut(s)	155, 190, 196, 1321, 1341
BstMWI	GCNNNNNNNGC	2 cut(s)	751, 1379
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	2 cut(s)	247, 1380
BstUI	CGCG	2 cut(s)	223, 672
BstV1I	GCAGC	3 cut(s)	202, 633, 1366
BstV2I	GAAGAC	2 cut(s)	322, 1041
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	6 cut(s)	8, 57, 83, 234, 421, 774
BtsCI	GGATG	1 cut(s)	1133
BtsIMutI	CAGTG	4 cut(s)	261, 272, 793, 1426
Cac8I	GCNNGC	1 cut(s)	585
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	508, 773
CsiI	ACCWGGT	1 cut(s)	574
Csp6I	GTAC	6 cut(s)	38, 368, 442, 619, 840, 974
CviAII	CATG	9 cut(s)	26, 34, 59, 85, 326, 341, 417, 524, 542
CviQI	GTAC	6 cut(s)	38, 368, 442, 619, 840, 974
DdeI	CTNAG	5 cut(s)	634, 912, 936, 950, 1074
DpnI	GATC	5 cut(s)	157, 192, 198, 1323, 1343
DpnII	GATC	5 cut(s)	155, 190, 196, 1321, 1341
EaeI	YGGCCR	2 cut(s)	81, 419
Eam1104I	CTCTTC	1 cut(s)	785
EarI	CTCTTC	1 cut(s)	785
Eco130I	CCWWGG	2 cut(s)	52, 1064
Eco31I	GGTCTC	1 cut(s)	1244
Eco47I	GGWCC	1 cut(s)	508
EcoRI	GAATTC	1 cut(s)	1132
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	2 cut(s)	52, 1064
ErhI	CCWWGG	2 cut(s)	52, 1064
FaeI	CATG	9 cut(s)	29, 37, 62, 88, 329, 344, 420, 527, 545
FatI	CATG	9 cut(s)	25, 33, 58, 84, 325, 340, 416, 523, 541
FauNDI	CATATG	1 cut(s)	763
Fnu4HI	GCNGC	4 cut(s)	216, 219, 647, 1380
FokI	GGATG	1 cut(s)	1140
Fsp4HI	GCNGC	4 cut(s)	216, 219, 647, 1380
FspBI	CTAG	1 cut(s)	1214
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	4 cut(s)	216, 219, 647, 1380
HaeIII	GGCC	6 cut(s)	8, 57, 83, 234, 421, 774
HapII	CCGG	2 cut(s)	231, 422
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	9 cut(s)	29, 37, 62, 88, 329, 344, 420, 527, 545
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	3 cut(s)	64, 124, 1294
HindII	GTYRAC	3 cut(s)	64, 124, 1294
HindIII	AAGCTT	1 cut(s)	1371
HinfI	GANTC	3 cut(s)	227, 651, 728
HpaII	CCGG	2 cut(s)	231, 422
HphI	GGTGA	6 cut(s)	5, 64, 100, 134, 436, 1331
Hpy166II	GTNNAC	5 cut(s)	64, 124, 791, 842, 1294
Hpy188I	TCNGA	6 cut(s)	294, 376, 642, 822, 829, 1302
Hpy188III	TCNNGA	7 cut(s)	194, 200, 311, 466, 542, 713, 1345
Hpy8I	GTNNAC	5 cut(s)	64, 124, 791, 842, 1294
Hpy99I	CGWCG	1 cut(s)	1004
HpyAV	CCTTC	7 cut(s)	79, 289, 418, 472, 655, 1330, 1342
HpyCH4III	ACNGT	7 cut(s)	256, 276, 372, 699, 709, 839, 1298
HpyCH4IV	ACGT	1 cut(s)	1425
HpyCH4V	TGCA	7 cut(s)	29, 95, 583, 745, 767, 1333, 1382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	751, 1379
HpyF3I	CTNAG	5 cut(s)	634, 912, 936, 950, 1074
HpySE526I	ACGT	1 cut(s)	1425
Hsp92II	CATG	9 cut(s)	29, 37, 62, 88, 329, 344, 420, 527, 545
HspAI	GCGC	1 cut(s)	221
KpnI	GGTACC	1 cut(s)	41
Kzo9I	GATC	5 cut(s)	155, 190, 196, 1321, 1341
LmnI	GCTCC	1 cut(s)	643
Lsp1109I	GCAGC	3 cut(s)	202, 633, 1366
LweI	GCATC	3 cut(s)	104, 253, 633
MabI	ACCWGGT	1 cut(s)	574
MaeI	CTAG	1 cut(s)	1214
MaeII	ACGT	1 cut(s)	1425
MaeIII	GTNAC	4 cut(s)	609, 907, 1250, 1421
MalI	GATC	5 cut(s)	157, 192, 198, 1323, 1343
MboI	GATC	5 cut(s)	155, 190, 196, 1321, 1341
MboII	GAAGA	5 cut(s)	178, 322, 772, 1016, 1046
MfeI	CAATTG	2 cut(s)	388, 768
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	1089
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	8 cut(s)	305, 388, 547, 768, 961, 1132, 1312, 1437
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	236, 737
MmeI	TCCRAC	1 cut(s)	1254
Mox20I	TGGCCA	1 cut(s)	83
MroXI	GAANNNNTTC	2 cut(s)	306, 665
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	5 cut(s)	488, 657, 678, 1055, 1115
MslI	CAYNNNNRTG	1 cut(s)	345
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	2 cut(s)	231, 422
MspR9I	CCNGG	1 cut(s)	576
MunI	CAATTG	2 cut(s)	388, 768
MvaI	CCWGG	1 cut(s)	576
MvnI	CGCG	2 cut(s)	223, 672
MwoI	GCNNNNNNNGC	2 cut(s)	751, 1379
NdeI	CATATG	1 cut(s)	763
NdeII	GATC	5 cut(s)	155, 190, 196, 1321, 1341
NlaIII	CATG	9 cut(s)	29, 37, 62, 88, 329, 344, 420, 527, 545
NlaIV	GGNNCC	3 cut(s)	39, 775, 1062
NmuCI	GTSAC	3 cut(s)	609, 1250, 1421
PagI	TCATGA	1 cut(s)	541
PdmI	GAANNNNTTC	2 cut(s)	306, 665
PfeI	GAWTC	1 cut(s)	651
PkrI	GCNGC	4 cut(s)	217, 220, 648, 1381
PleI	GAGTC	2 cut(s)	235, 736
PpsI	GAGTC	2 cut(s)	235, 736
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	3 cut(s)	39, 775, 1062
PspPI	GGNCC	2 cut(s)	508, 773
PstI	CTGCAG	1 cut(s)	1384
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	6 cut(s)	39, 369, 443, 620, 841, 975
RsaNI	GTAC	6 cut(s)	38, 368, 442, 619, 840, 974
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	5 cut(s)	488, 657, 678, 1055, 1115
SatI	GCNGC	4 cut(s)	216, 219, 647, 1380
Sau3AI	GATC	5 cut(s)	155, 190, 196, 1321, 1341
Sau96I	GGNCC	2 cut(s)	508, 773
SchI	GAGTC	2 cut(s)	236, 737
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	1 cut(s)	1089
SexAI	ACCWGGT	1 cut(s)	574
SfaNI	GCATC	3 cut(s)	104, 253, 633
SfcI	CTRYAG	2 cut(s)	247, 1380
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	2 cut(s)	311, 864
SmoI	CTYRAG	2 cut(s)	311, 864
SpeI	ACTAGT	1 cut(s)	1213
Sse9I	AATT	8 cut(s)	305, 388, 547, 768, 961, 1132, 1312, 1437
SsiI	CCGC	2 cut(s)	218, 670
SspMI	CTAG	1 cut(s)	1214
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	2 cut(s)	52, 1064
TaaI	ACNGT	7 cut(s)	256, 276, 372, 699, 709, 839, 1298
TaiI	ACGT	1 cut(s)	1428
TaqI	TCGA	1 cut(s)	1324
TasI	AATT	8 cut(s)	305, 388, 547, 768, 961, 1132, 1312, 1437
TatI	WGTACW	4 cut(s)	367, 441, 618, 839
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	651
Tru1I	TTAA	5 cut(s)	488, 657, 678, 1055, 1115
Tru9I	TTAA	5 cut(s)	488, 657, 678, 1055, 1115
TscAI	CASTG	4 cut(s)	261, 279, 793, 1426
TseFI	GTSAC	3 cut(s)	609, 1250, 1421
TseI	GCWGC	3 cut(s)	215, 646, 1379
Tsp45I	GTSAC	3 cut(s)	609, 1250, 1421
TspDTI	ATGAA	5 cut(s)	101, 128, 363, 876, 955
TspRI	CASTG	4 cut(s)	261, 279, 793, 1426
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	4 cut(s)	961, 1132, 1312, 1437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805
XmnI	GAANNNNTTC	2 cut(s)	306, 665
XspI	CTAG	1 cut(s)	1214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.