Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002191

Physical Location & Seq

Genomic Coordinates Reverse (-)

13550277 .. 13551812

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g11340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGAGGACAAAGCCTCAACCCCTCATGCAATCATGGTGCCTCTTCCTCTCCAAGGCCATGTAACCCCATTGACCCATCTGGCCACGAAGCTTGCTTCACAGGGCTTCACCATCACTTTTGTCAACACCCAATATATTCACCACCACATACTCAAGTCACAACCCAACGACAACACAGAAGACGATATCTTTGCCATGGCGCGTAAATCCGGTCTAGACATACGCTACACAACAGTAAGTGATGGATTTCCACTAGCTTTCGACCGAATTCAGAACCTCGACCAATCTCTTGAGGGTGCTTTGCATGTCTTCCCTGCCCATGTGGATGAACTTGTTGGAAATTTAGTCCAATCTGACCCCTCAATCACTTGTTTGATTGTTGATACTTTCCAATCATGGTCAGCAACCATAGCCAATAAGTACAACCTTATCCATATTTCCTTCTGGACTGAACCAGCTCTAGTGTTCAACATCTACTATCACTTGGACCTTCTCAAAAAAAATGGTCATTTCGGTTCTCATGATAATCGCGAGGACATCATTGATTACATACCTGGCGTGAAAACTATTGAACCAAAGGACTTGATGTCACACCTCCAATCAACAGATTTATTTTGCCCAATGCTCCGAACGTTTTACAAGTCATTTCGCGAAGTGAAAAGGGCAGATTTTATTTTGTGTAATACAGTGCAAGAACTTGAATTTGAGTCCCTTTCTGCCTTGCAAGCTAAGCAACCAACATATGCAATTGGCCCTGTCTTCCCCGATAATCTCACCAAGAATATCGTGGCTACCAACCTGATGCCAGAATTTGACTGCATCCATTGGCTCCACGAGAAGCCTCATGGTTCGGTTTTGTTCATTTCATTTGGAAGCTATGCTCAAGTTACAAAAGATGATTTTGAGGAAATAGCTCATGGGCTTTTGCTTAGTAAAGTGAATTTCATCTGGGTACTTCGTTCCGACGCTACAGGTTATGATGAAACGTATATTCTACCAGTCGGATTTGAAGATGAGATTAAAGATAGAGGGTTGATGGTGCCATGGTGTTCTCAGATTGAGGTGCTTTCACATCCAGCAGTAGGAGGGTTCTTAACGCATTGTGGATGGAATTCTATACTGGAAAGTATGCGGTGTGGTGTTCCCATGCTGTGTTTCCCACTAGTGGCTGACCAAATCACTAATAGGAAACTAGTAGTTGATTATTGGGGCATTGGACTCAATCTTTGTGATCGGGTTAAACCCATTAGAAGGGTGGAGGTAGCAGACAAGATCAACCGTCTGATATGTGGAAAATCGGGTGACGGTTTGCAGAAGAAGACCATGAAAATAACTCAAATATTGGCTGATGCAGTGGCTTTAAACGGGTCATCTCAAAAGAACTTATCTCAATTCATTAGTAATGTGAAGGAAAAAATTCAGACACGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

478

Amino Acids

53.81

Weight (kDa)

5.94

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36970
fragaria_vesca	FvH4_6g16230 FvH4_6g16230 FvH4_6g16250
malus_domestica	MD12G1114000.v1.1 MD12G1114100.v1.1 MD12G1114200.v1.1
prunus_persica	Prupe.6G233100_v2.0.a1 Prupe.6G233200_v2.0.a1 Prupe.6G233300_v2.0.a1 Prupe.6G233400_v2.0.a1 Prupe.6G233500_v2.0.a1 Prupe.6G233600_v2.0.a1 Prupe.6G233600_v2.0.a1
pyrus_communis	pycom12g11320 pycom12g11330 pycom12g11340
rosa_chinensis	RchiOBHm_Chr3g0470071 RchiOBHm_Chr3g0470101 RchiOBHm_Chr3g0470111
rosa_laevigata	RLG00000024296 RLG00000024298 RLG00000024299
rosa_multiflora	Rmu_sc0005600.1_g000011 Rmu_sc0005600.1_g000012 Rmu_sc0009114.1_g000016
rosa_roxburghii	Rroxscaffold_6G00411170 Rroxscaffold_6G00411180 Rroxscaffold_6G00411200
rosa_rugosa	Rorug03G0106700 Rorug03G0106700
rosa_samantha	Rh3AG155900 Rh3AG156200 Rh3BG180100 Rh3BG180200 Rh3CG170600 Rh3CG171000 Rh3DG195100
rosa_wichuraiana	Rw3G014680 Rw3G014690 Rw3G014700 Rw3G014760 Rw3G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	37, 1039
AccII	CGCG	3 cut(s)	202, 531, 651
AciI	CCGC	1 cut(s)	1132
AclI	AACGTT	1 cut(s)	632
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	7 cut(s)	267, 340, 701, 809, 940, 1111, 1416
AfaI	GTAC	2 cut(s)	422, 954
AfiI	CCNNNNNNNGG	4 cut(s)	53, 1082, 1165, 1251
AgsI	TTSAA	4 cut(s)	469, 572, 701, 1010
AhdI	GACNNNNNGTC	1 cut(s)	586
AhlI	ACTAGT	2 cut(s)	1162, 1192
AjnI	CCWGG	1 cut(s)	553
AleI	CACNNNNGTG	1 cut(s)	1429
AluBI	AGCT	6 cut(s)	91, 257, 458, 728, 876, 914
AluI	AGCT	6 cut(s)	91, 257, 458, 728, 876, 914
AoxI	GGCC	3 cut(s)	55, 81, 751
ApoI	RAATTY	7 cut(s)	267, 340, 701, 809, 940, 1111, 1416
ArsI	GACNNNNNNTTYG	4 cut(s)	173, 205, 1209, 1241
Asp700I	GAANNNNTTC	1 cut(s)	1416
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	487, 752
AsuHPI	GGTGA	4 cut(s)	100, 131, 766, 1313
AvaII	GGWCC	1 cut(s)	487
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	37, 1039
BauI	CACGAG	1 cut(s)	833
BbsI	GAAGAC	4 cut(s)	186, 301, 751, 1325
BccI	CCATC	5 cut(s)	84, 119, 236, 1030, 1101
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	1 cut(s)	555
BcuI	ACTAGT	2 cut(s)	1162, 1192
BfaI	CTAG	5 cut(s)	215, 254, 461, 1163, 1193
BfmI	CTRYAG	1 cut(s)	969
BlpI	GCTNAGC	1 cut(s)	729
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	1 cut(s)	487
BmeRI	GACNNNNNGTC	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	487, 752
BmiI	GGNNCC	3 cut(s)	39, 830, 1041
BmrFI	CCNGG	1 cut(s)	555
BmsI	GCATC	3 cut(s)	792, 828, 1339
BpiI	GAAGAC	4 cut(s)	186, 301, 751, 1325
Bpu1102I	GCTNAGC	1 cut(s)	729
BpuEI	CTTGAG	3 cut(s)	137, 311, 867
BsaJI	CCNNGG	3 cut(s)	52, 195, 1043
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 1082, 1165, 1251
Bse1I	ACTGG	2 cut(s)	998, 1125
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	52, 195, 1043
BseGI	GGATG	4 cut(s)	331, 819, 1072, 1112
BseLI	CCNNNNNNNGG	4 cut(s)	53, 1082, 1165, 1251
BseMII	CTCAG	1 cut(s)	1067
BseNI	ACTGG	2 cut(s)	998, 1125
Bsh1236I	CGCG	3 cut(s)	202, 531, 651
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	3 cut(s)	57, 83, 753
BshNI	GGYRCC	2 cut(s)	37, 1039
BsiEI	CGRYCG	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	694
BslI	CCNNNNNNNGG	4 cut(s)	53, 1082, 1165, 1251
BsmFI	GGGAC	1 cut(s)	694
BsnI	GGCC	3 cut(s)	57, 83, 753
Bsp143I	GATC	2 cut(s)	1231, 1272
Bsp1720I	GCTNAGC	1 cut(s)	729
Bsp19I	CCATGG	2 cut(s)	195, 1043
Bsp68I	TCGCGA	2 cut(s)	531, 651
BspACI	CCGC	1 cut(s)	1132
BspANI	GGCC	3 cut(s)	57, 83, 753
BspCNI	CTCAG	1 cut(s)	1066
BspFNI	CGCG	3 cut(s)	202, 531, 651
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	3 cut(s)	39, 830, 1041
BspT107I	GGYRCC	2 cut(s)	37, 1039
BsrI	ACTGG	2 cut(s)	998, 1125
BssECI	CCNNGG	3 cut(s)	52, 195, 1043
BssMI	GATC	2 cut(s)	1231, 1272
BssSI	CACGAG	1 cut(s)	833
BssT1I	CCWWGG	3 cut(s)	52, 195, 1043
Bst2BI	CACGAG	1 cut(s)	833
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	4 cut(s)	235, 688, 1280, 1307
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	93, 726
BstDEI	CTNAG	3 cut(s)	729, 929, 1053
BstDSI	CCRYGG	2 cut(s)	195, 1043
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	4 cut(s)	331, 819, 1072, 1112
BstFNI	CGCG	3 cut(s)	202, 531, 651
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	2 cut(s)	1234, 1275
BstMBI	GATC	2 cut(s)	1231, 1272
BstMCI	CGRYCG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 725, 730
BstNI	CCWGG	1 cut(s)	555
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	553
BstSFI	CTRYAG	1 cut(s)	969
BstUI	CGCG	3 cut(s)	202, 531, 651
BstV2I	GAAGAC	4 cut(s)	186, 301, 751, 1325
BsuRI	GGCC	3 cut(s)	57, 83, 753
BtgI	CCRYGG	2 cut(s)	195, 1043
BtsCI	GGATG	4 cut(s)	331, 819, 1072, 1112
BtsI	GCAGTG	1 cut(s)	1359
BtsIMutI	CAGTG	2 cut(s)	693, 1359
BtuMI	TCGCGA	2 cut(s)	531, 651
Cac8I	GCNNGC	2 cut(s)	93, 726
CciI	TCATGA	1 cut(s)	520
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	487, 752
CseI	GACGC	1 cut(s)	974
Csp6I	GTAC	2 cut(s)	421, 953
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviQI	GTAC	2 cut(s)	421, 953
DdeI	CTNAG	3 cut(s)	729, 929, 1053
DpnI	GATC	2 cut(s)	1233, 1274
DpnII	GATC	2 cut(s)	1231, 1272
DraI	TTTAAA	1 cut(s)	1362
DriI	GACNNNNNGTC	1 cut(s)	586
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	48
Eam1105I	GACNNNNNGTC	1 cut(s)	586
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	3 cut(s)	52, 195, 1043
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	487
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoRI	GAATTC	2 cut(s)	267, 1111
EcoRII	CCWGG	1 cut(s)	553
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	3 cut(s)	52, 195, 1043
ErhI	CCWWGG	3 cut(s)	52, 195, 1043
FaqI	GGGAC	1 cut(s)	694
FauNDI	CATATG	1 cut(s)	742
FokI	GGATG	4 cut(s)	338, 806, 1059, 1119
FspBI	CTAG	5 cut(s)	215, 254, 461, 1163, 1193
GlaI	GCGC	1 cut(s)	201
HaeIII	GGCC	3 cut(s)	57, 83, 753
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	1 cut(s)	974
HhaI	GCGC	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	2 cut(s)	707, 1218
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	4 cut(s)	100, 131, 766, 1313
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	8 cut(s)	273, 355, 629, 964, 1004, 1056, 1284, 1422
Hpy188III	TCNNGA	6 cut(s)	215, 290, 445, 521, 530, 650
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	968
HpyAV	CCTTC	4 cut(s)	451, 500, 1245, 1402
HpyCH4III	ACNGT	4 cut(s)	235, 688, 1280, 1307
HpyCH4IV	ACGT	2 cut(s)	632, 986
HpyCH4V	TGCA	8 cut(s)	29, 304, 691, 724, 746, 819, 1312, 1352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 725, 730
HpyF3I	CTNAG	3 cut(s)	729, 929, 1053
HpySE526I	ACGT	2 cut(s)	632, 986
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	1231, 1272
LmnI	GCTCC	2 cut(s)	630, 834
LweI	GCATC	3 cut(s)	792, 828, 1339
MaeI	CTAG	5 cut(s)	215, 254, 461, 1163, 1193
MaeII	ACGT	2 cut(s)	632, 986
MaeIII	GTNAC	5 cut(s)	61, 156, 588, 886, 1301
MalI	GATC	2 cut(s)	1233, 1274
MboI	GATC	2 cut(s)	1231, 1272
MboII	GAAGA	7 cut(s)	35, 191, 301, 751, 1022, 1327, 1330
MfeI	CAATTG	1 cut(s)	747
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	9 cut(s)	267, 340, 701, 747, 809, 940, 1111, 1391, 1416
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	716, 1212
MmeI	TCCRAC	3 cut(s)	316, 982, 987
Mox20I	TGGCCA	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	1416
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	4 cut(s)	1020, 1094, 1239, 1361
MslI	CAYNNNNRTG	2 cut(s)	324, 1429
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	555
MunI	CAATTG	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	555
MvnI	CGCG	3 cut(s)	202, 531, 651
MwoI	GCNNNNNNNGC	3 cut(s)	410, 725, 730
NcoI	CCATGG	2 cut(s)	195, 1043
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	2 cut(s)	1231, 1272
NlaIV	GGNNCC	3 cut(s)	39, 830, 1041
NmuCI	GTSAC	3 cut(s)	156, 588, 1301
NruI	TCGCGA	2 cut(s)	531, 651
NspI	RCATGY	1 cut(s)	308
OliI	CACNNNNGTG	1 cut(s)	1429
PagI	TCATGA	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	1416
PleI	GAGTC	2 cut(s)	715, 1212
PpsI	GAGTC	2 cut(s)	715, 1212
Psp1406I	AACGTT	1 cut(s)	632
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	3 cut(s)	39, 830, 1041
PspPI	GGNCC	2 cut(s)	487, 752
RruI	TCGCGA	2 cut(s)	531, 651
RsaI	GTAC	2 cut(s)	422, 954
RsaNI	GTAC	2 cut(s)	421, 953
RseI	CAYNNNNRTG	2 cut(s)	324, 1429
SaqAI	TTAA	4 cut(s)	1020, 1094, 1239, 1361
Sau3AI	GATC	2 cut(s)	1231, 1272
Sau96I	GGNCC	2 cut(s)	487, 752
SchI	GAGTC	2 cut(s)	716, 1212
ScrFI	CCNGG	1 cut(s)	555
SfaNI	GCATC	3 cut(s)	792, 828, 1339
SfcI	CTRYAG	1 cut(s)	969
SinI	GGWCC	1 cut(s)	487
SmiMI	CAYNNNNRTG	2 cut(s)	324, 1429
SmlI	CTYRAG	3 cut(s)	152, 290, 882
SmoI	CTYRAG	3 cut(s)	152, 290, 882
SpeI	ACTAGT	2 cut(s)	1162, 1192
Sse9I	AATT	9 cut(s)	267, 340, 701, 747, 809, 940, 1111, 1391, 1416
SsiI	CCGC	1 cut(s)	1132
SspI	AATATT	1 cut(s)	1341
SspMI	CTAG	5 cut(s)	215, 254, 461, 1163, 1193
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	3 cut(s)	52, 195, 1043
TaaI	ACNGT	4 cut(s)	235, 688, 1280, 1307
TaiI	ACGT	2 cut(s)	635, 989
TaqI	TCGA	2 cut(s)	261, 279
TaqII	GACCGA	1 cut(s)	279
TasI	AATT	9 cut(s)	267, 340, 701, 747, 809, 940, 1111, 1391, 1416
TatI	WGTACW	1 cut(s)	420
Tru1I	TTAA	4 cut(s)	1020, 1094, 1239, 1361
Tru9I	TTAA	4 cut(s)	1020, 1094, 1239, 1361
TscAI	CASTG	2 cut(s)	693, 1359
TseFI	GTSAC	3 cut(s)	156, 588, 1301
Tsp45I	GTSAC	3 cut(s)	156, 588, 1301
TspDTI	ATGAA	7 cut(s)	342, 850, 855, 934, 996, 1340, 1384
TspRI	CASTG	2 cut(s)	693, 1359
VpaK11BI	GGWCC	1 cut(s)	487
XagI	CCTNNNNNAGG	1 cut(s)	51
XapI	RAATTY	7 cut(s)	267, 340, 701, 809, 940, 1111, 1416
XbaI	TCTAGA	1 cut(s)	214
XceI	RCATGY	1 cut(s)	308
XcmI	CCANNNNNNNNNTGG	2 cut(s)	784, 1252
XmnI	GAANNNNTTC	1 cut(s)	1416
XspI	CTAG	5 cut(s)	215, 254, 461, 1163, 1193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.