Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002191

Physical Location & Seq

Genomic Coordinates Forward (+)

14984023 .. 14985810

Gene Structure 1788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G014760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGAGGCCAATCACCCAAAGCCTCATGCAATCATGGTACCTGTTCCTCTCCAAGGCCATGTCAACCCCTTCACCCACTTGGCCATGAACCTTGCATCAAATGGCTTCACCATCACTTTTGTCAACACTCAATACATTCATCACCAGATAACCAAAAACAACACCAAACAAGAGCAAGATCAAGATGACATCTTTGCGGCGGCGCGTGAGTCCGGCCTTGACATACGCTATAGAACAGTGAGCGATGCTTTCCCACTGTCCTTCAATCGGTTTCAGAACAGTGACCAATTTCTTGAGGGTAGTATCCATGTCTTCCCTGCCCATGTTGATGAACTTGTTGGAGATTTAGTACAATCTGACCCCTCAATCAATTGTTTGATTGCTGACACCTTCTACACATGGCCGGTGATGATAGCCAACAAGTACAACCTTATCAATATCTCCTTCTGGACTGAACCAGCTTTAGTCTTAAACATTTACTACCACTTGGACCTCCTCATAAAACATGGTCATTTTGGTTGTCATGATAATTGTGAGGACACCATAGATTACATACCTGGTGTGCAGGCTATTGAACCAAAGGATTTGATGTCACACCTGTACATTACTGATACCTCAGCTCCGATGCTGCGAATCATTAAGAAGGCGTTCCGCGAAGTTAAGAGGGCAGATTTTATACTGTGTAATACAGTGCAAGTACTTGAAGCAGAGTCTCTTTCAGCCTTGCAAGACAAGCAACCTACATATGCAATTGGCCCTGTCTTCCCCACTGAACCCACCAAGAATGTTGTGGCTACTAATCTGATGTCCGAGATTGACTGTACACAATGGCTCAAGACCAAGCCTCAAGGTTCAGTTTTGTATGTTTCATTTGGTAGCTATTGTCAGGTTACTAAGAATGAGTTTGAGGAAATAGCTCAGGGGCTTTTGCTTAGTAAAGTGAATTTCATTTGGGTACTACGCCCTGACACTATAAGCTATGACGAAGAAAGGTATATTGTTCCCTTTGGATTGGAAGACCGGAGCGATAAAGGGTTAATGGTGCCTTGGTGTTCTCAGGTTGAGGTGCTCTCAAATCCAGCGATAGGAGGGTTCTTAACTCATTGTGGTTGGAATTCCATACTGGAAAGTATGTGGTTTGGTGTTCCAATGCTGTGTTTTCCTATTGAAACTGACCAAATCACTAATAGGAAACTAGTGGTTGATGATTGGAGGATTGGTCTCAATCTATGTGATAGGAAGCCAATCACAAGGTTGGAGGTAGCACAGAAGGTCAACCGTCTGATGGGTGGAAATTTGGGTGATCGACTATTGCAGAAGGAGATCAAGAAGGCAAAGCAGACAGTGGAGGAAGCTTTGGCTGCAGATGGGTCATCACAACAGAGTTTCCGCCGATTTTTTAGTGATGTAAAGGCTAAAATTCAAACACGCATTTCAGACATTAATATTTGCAAGACATTGACGAAGAATATGAAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

493

Amino Acids

55.98

Weight (kDa)

5.8

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	11 - 52	2.9e-06	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	283 - 405	2.3e-17	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36970
fragaria_vesca	FvH4_6g16230 FvH4_6g16230 FvH4_6g16250
malus_domestica	MD12G1114000.v1.1 MD12G1114100.v1.1 MD12G1114200.v1.1
prunus_persica	Prupe.6G233100_v2.0.a1 Prupe.6G233200_v2.0.a1 Prupe.6G233300_v2.0.a1 Prupe.6G233400_v2.0.a1 Prupe.6G233500_v2.0.a1 Prupe.6G233600_v2.0.a1 Prupe.6G233600_v2.0.a1
pyrus_communis	pycom12g11320 pycom12g11330 pycom12g11340
rosa_chinensis	RchiOBHm_Chr3g0470071 RchiOBHm_Chr3g0470101 RchiOBHm_Chr3g0470111
rosa_laevigata	RLG00000024296 RLG00000024298 RLG00000024299
rosa_multiflora	Rmu_sc0005600.1_g000011 Rmu_sc0005600.1_g000012 Rmu_sc0009114.1_g000016
rosa_roxburghii	Rroxscaffold_6G00411170 Rroxscaffold_6G00411180 Rroxscaffold_6G00411200
rosa_rugosa	Rorug03G0106700 Rorug03G0106700
rosa_samantha	Rh3AG155900 Rh3AG156200 Rh3BG180100 Rh3BG180200 Rh3CG170600 Rh3CG171000 Rh3DG195100
rosa_wichuraiana	Rw3G014680 Rw3G014690 Rw3G014700 Rw3G014760 Rw3G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	37
AccB1I	GGYRCC	2 cut(s)	37, 1042
AccII	CGCG	2 cut(s)	205, 654
AciI	CCGC	4 cut(s)	197, 200, 652, 1390
AcoI	YGGCCR	2 cut(s)	81, 401
AcsI	RAATTY	4 cut(s)	943, 1114, 1294, 1419
AfaI	GTAC	7 cut(s)	39, 351, 425, 602, 699, 823, 957
AfiI	CCNNNNNNNGG	4 cut(s)	53, 267, 1085, 1285
AgsI	TTSAA	5 cut(s)	265, 575, 704, 1169, 1424
AhlI	ACTAGT	1 cut(s)	1195
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	6 cut(s)	461, 620, 879, 917, 978, 1355
AluI	AGCT	6 cut(s)	461, 620, 879, 917, 978, 1355
Alw21I	GWGCWC	1 cut(s)	1071
Alw26I	GTCTC	2 cut(s)	717, 1226
AoxI	GGCC	6 cut(s)	6, 55, 81, 214, 401, 754
ApeKI	GCWGC	2 cut(s)	628, 1361
ApoI	RAATTY	4 cut(s)	943, 1114, 1294, 1419
AseI	ATTAAT	1 cut(s)	1443
Asp700I	GAANNNNTTC	1 cut(s)	647
Asp718I	GGTACC	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	2 cut(s)	490, 755
AsuHPI	GGTGA	6 cut(s)	5, 64, 100, 134, 418, 1313
AvaII	GGWCC	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	37, 1042
BbsI	GAAGAC	3 cut(s)	304, 754, 1023
Bbv12I	GWGCWC	1 cut(s)	1071
BbvCI	CCTCAGC	1 cut(s)	616
BbvI	GCAGC	2 cut(s)	615, 1348
BccI	CCATC	3 cut(s)	119, 1279, 1361
BciT130I	CCWGG	1 cut(s)	558
BciVI	GTATCC	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	717, 1226
BcuI	ACTAGT	1 cut(s)	1195
BfaI	CTAG	1 cut(s)	1196
BfmI	CTRYAG	2 cut(s)	229, 1362
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	4 cut(s)	198, 201, 629, 1362
BlsI	GCNGC	4 cut(s)	199, 202, 630, 1363
BmcAI	AGTACT	1 cut(s)	699
Bme1390I	CCNGG	1 cut(s)	558
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	490, 755
BmiI	GGNNCC	2 cut(s)	39, 1044
BmrFI	CCNGG	1 cut(s)	558
BmsI	GCATC	3 cut(s)	104, 235, 615
BpiI	GAAGAC	3 cut(s)	304, 754, 1023
BplI	GAGNNNNNCTC	2 cut(s)	1055, 1087
Bpu10I	CCTNAGC	2 cut(s)	616, 918
BpuEI	CTTGAG	3 cut(s)	314, 818, 831
BsaI	GGTCTC	1 cut(s)	1226
BsaJI	CCNNGG	2 cut(s)	52, 1046
BsaWI	WCCGGW	1 cut(s)	1020
BsaXI	ACNNNNNCTCC	6 cut(s)	333, 363, 604, 634, 1204, 1234
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 267, 1085, 1285
Bse118I	RCCGGY	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	1128
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	52, 1046
BseLI	CCNNNNNNNGG	4 cut(s)	53, 267, 1085, 1285
BseMII	CTCAG	3 cut(s)	630, 932, 1070
BseNI	ACTGG	1 cut(s)	1128
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	2 cut(s)	615, 1348
BsgI	GTGCAG	1 cut(s)	584
Bsh1236I	CGCG	2 cut(s)	205, 654
BshFI	GGCC	6 cut(s)	8, 57, 83, 216, 403, 756
BshNI	GGYRCC	2 cut(s)	37, 1042
BsiHKAI	GWGCWC	1 cut(s)	1071
BsiSI	CCGG	3 cut(s)	213, 404, 1021
BslI	CCNNNNNNNGG	4 cut(s)	53, 267, 1085, 1285
BsmAI	GTCTC	2 cut(s)	717, 1226
BsnI	GGCC	6 cut(s)	8, 57, 83, 216, 403, 756
Bso31I	GGTCTC	1 cut(s)	1226
Bsp1286I	GDGCHC	1 cut(s)	1071
Bsp1407I	TGTACA	2 cut(s)	600, 821
Bsp143I	GATC	3 cut(s)	178, 1303, 1323
BspACI	CCGC	4 cut(s)	197, 200, 652, 1390
BspANI	GGCC	6 cut(s)	8, 57, 83, 216, 403, 756
BspCNI	CTCAG	3 cut(s)	629, 931, 1069
BspFNI	CGCG	2 cut(s)	205, 654
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	39, 1044
BspMAI	CTGCAG	1 cut(s)	1366
BspT107I	GGYRCC	2 cut(s)	37, 1042
BspTNI	GGTCTC	1 cut(s)	1226
BsrFI	RCCGGY	1 cut(s)	403
BsrGI	TGTACA	2 cut(s)	600, 821
BsrI	ACTGG	1 cut(s)	1128
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	52, 1046
BssMI	GATC	3 cut(s)	178, 1303, 1323
BssT1I	CCWWGG	2 cut(s)	52, 1046
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	8 cut(s)	238, 258, 281, 681, 691, 821, 1280, 1345
BstAUI	TGTACA	2 cut(s)	600, 821
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	5 cut(s)	616, 894, 918, 932, 1056
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstFNI	CGCG	2 cut(s)	205, 654
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	3 cut(s)	181, 1306, 1326
BstMAI	GTCTC	2 cut(s)	717, 1226
BstMBI	GATC	3 cut(s)	178, 1303, 1323
BstMWI	GCNNNNNNNGC	2 cut(s)	733, 1361
BstNI	CCWGG	1 cut(s)	558
BstSCI	CCNGG	1 cut(s)	556
BstSFI	CTRYAG	2 cut(s)	229, 1362
BstUI	CGCG	2 cut(s)	205, 654
BstV1I	GCAGC	2 cut(s)	615, 1348
BstV2I	GAAGAC	3 cut(s)	304, 754, 1023
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	6 cut(s)	8, 57, 83, 216, 403, 756
BtgZI	GCGATG	1 cut(s)	258
BtsIMutI	CAGTG	6 cut(s)	243, 254, 286, 696, 768, 1350
Cac8I	GCNNGC	1 cut(s)	567
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	2 cut(s)	490, 755
CsiI	ACCWGGT	1 cut(s)	556
Csp6I	GTAC	7 cut(s)	38, 350, 424, 601, 698, 822, 956
CviAII	CATG	9 cut(s)	26, 34, 59, 85, 308, 323, 399, 506, 524
CviQI	GTAC	7 cut(s)	38, 350, 424, 601, 698, 822, 956
DdeI	CTNAG	5 cut(s)	616, 894, 918, 932, 1056
DpnI	GATC	3 cut(s)	180, 1305, 1325
DpnII	GATC	3 cut(s)	178, 1303, 1323
EaeI	YGGCCR	2 cut(s)	81, 401
EciI	GGCGGA	1 cut(s)	1379
Eco130I	CCWWGG	2 cut(s)	52, 1046
Eco31I	GGTCTC	1 cut(s)	1226
Eco47I	GGWCC	1 cut(s)	490
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	1114
EcoRII	CCWGG	1 cut(s)	556
EcoT14I	CCWWGG	2 cut(s)	52, 1046
ErhI	CCWWGG	2 cut(s)	52, 1046
FaeI	CATG	9 cut(s)	29, 37, 62, 88, 311, 326, 402, 509, 527
FatI	CATG	9 cut(s)	25, 33, 58, 84, 307, 322, 398, 505, 523
FauNDI	CATATG	1 cut(s)	745
Fnu4HI	GCNGC	4 cut(s)	198, 201, 629, 1362
Fsp4HI	GCNGC	4 cut(s)	198, 201, 629, 1362
FspBI	CTAG	1 cut(s)	1196
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	4 cut(s)	198, 201, 629, 1362
HaeIII	GGCC	6 cut(s)	8, 57, 83, 216, 403, 756
HapII	CCGG	3 cut(s)	213, 404, 1021
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	9 cut(s)	29, 37, 62, 88, 311, 326, 402, 509, 527
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HincII	GTYRAC	3 cut(s)	64, 124, 1276
HindII	GTYRAC	3 cut(s)	64, 124, 1276
HindIII	AAGCTT	1 cut(s)	1353
HinfI	GANTC	3 cut(s)	209, 633, 710
HpaII	CCGG	3 cut(s)	213, 404, 1021
HphI	GGTGA	6 cut(s)	5, 64, 100, 134, 418, 1313
Hpy166II	GTNNAC	4 cut(s)	64, 124, 824, 1276
Hpy188I	TCNGA	7 cut(s)	276, 358, 624, 804, 811, 1284, 1438
Hpy188III	TCNNGA	6 cut(s)	182, 293, 448, 524, 835, 1327
Hpy8I	GTNNAC	4 cut(s)	64, 124, 824, 1276
HpyAV	CCTTC	8 cut(s)	79, 271, 400, 454, 637, 1264, 1312, 1324
HpyCH4III	ACNGT	8 cut(s)	238, 258, 281, 681, 691, 821, 1280, 1345
HpyCH4V	TGCA	9 cut(s)	29, 95, 565, 694, 727, 749, 1315, 1364, 1452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	733, 1361
HpyF3I	CTNAG	5 cut(s)	616, 894, 918, 932, 1056
Hsp92II	CATG	9 cut(s)	29, 37, 62, 88, 311, 326, 402, 509, 527
HspAI	GCGC	1 cut(s)	203
KpnI	GGTACC	1 cut(s)	41
Kzo9I	GATC	3 cut(s)	178, 1303, 1323
LmnI	GCTCC	2 cut(s)	625, 1023
Lsp1109I	GCAGC	2 cut(s)	615, 1348
LweI	GCATC	3 cut(s)	104, 235, 615
MabI	ACCWGGT	1 cut(s)	556
MaeI	CTAG	1 cut(s)	1196
MaeIII	GTNAC	3 cut(s)	281, 591, 889
MalI	GATC	3 cut(s)	180, 1305, 1325
MboI	GATC	3 cut(s)	178, 1303, 1323
MboII	GAAGA	5 cut(s)	304, 754, 998, 1028, 1477
MfeI	CAATTG	2 cut(s)	370, 750
MhlI	GDGCHC	1 cut(s)	1071
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	8 cut(s)	287, 370, 529, 750, 943, 1114, 1294, 1419
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	218, 719
MmeI	TCCRAC	3 cut(s)	319, 1091, 1236
Mox20I	TGGCCA	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	6 cut(s)	470, 639, 660, 1037, 1097, 1443
MslI	CAYNNNNRTG	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	3 cut(s)	213, 404, 1021
MspR9I	CCNGG	1 cut(s)	558
MunI	CAATTG	2 cut(s)	370, 750
MvaI	CCWGG	1 cut(s)	558
MvnI	CGCG	2 cut(s)	205, 654
MwoI	GCNNNNNNNGC	2 cut(s)	733, 1361
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	3 cut(s)	178, 1303, 1323
NlaIII	CATG	9 cut(s)	29, 37, 62, 88, 311, 326, 402, 509, 527
NlaIV	GGNNCC	2 cut(s)	39, 1044
NmuCI	GTSAC	2 cut(s)	281, 591
PagI	TCATGA	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	1 cut(s)	633
PkrI	GCNGC	4 cut(s)	199, 202, 630, 1363
PleI	GAGTC	2 cut(s)	217, 718
PpsI	GAGTC	2 cut(s)	217, 718
PshBI	ATTAAT	1 cut(s)	1443
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	2 cut(s)	39, 1044
PspPI	GGNCC	2 cut(s)	490, 755
PstI	CTGCAG	1 cut(s)	1366
RsaI	GTAC	7 cut(s)	39, 351, 425, 602, 699, 823, 957
RsaNI	GTAC	7 cut(s)	38, 350, 424, 601, 698, 822, 956
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	6 cut(s)	470, 639, 660, 1037, 1097, 1443
SatI	GCNGC	4 cut(s)	198, 201, 629, 1362
Sau3AI	GATC	3 cut(s)	178, 1303, 1323
Sau96I	GGNCC	2 cut(s)	490, 755
ScaI	AGTACT	1 cut(s)	699
SchI	GAGTC	2 cut(s)	218, 719
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	1 cut(s)	1071
SexAI	ACCWGGT	1 cut(s)	556
SfaNI	GCATC	3 cut(s)	104, 235, 615
SfcI	CTRYAG	2 cut(s)	229, 1362
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	3 cut(s)	293, 833, 846
SmoI	CTYRAG	3 cut(s)	293, 833, 846
SpeI	ACTAGT	1 cut(s)	1195
Sse9I	AATT	8 cut(s)	287, 370, 529, 750, 943, 1114, 1294, 1419
SsiI	CCGC	4 cut(s)	197, 200, 652, 1390
SspI	AATATT	1 cut(s)	1447
SspMI	CTAG	1 cut(s)	1196
StyD4I	CCNGG	1 cut(s)	556
StyI	CCWWGG	2 cut(s)	52, 1046
TaaI	ACNGT	8 cut(s)	238, 258, 281, 681, 691, 821, 1280, 1345
TaqI	TCGA	1 cut(s)	1306
TasI	AATT	8 cut(s)	287, 370, 529, 750, 943, 1114, 1294, 1419
TatI	WGTACW	5 cut(s)	349, 423, 600, 697, 821
TauI	GCSGC	2 cut(s)	200, 203
TfiI	GAWTC	1 cut(s)	633
Tru1I	TTAA	6 cut(s)	470, 639, 660, 1037, 1097, 1443
Tru9I	TTAA	6 cut(s)	470, 639, 660, 1037, 1097, 1443
TscAI	CASTG	6 cut(s)	243, 261, 286, 696, 775, 1350
TseFI	GTSAC	2 cut(s)	281, 591
TseI	GCWGC	2 cut(s)	628, 1361
Tsp45I	GTSAC	2 cut(s)	281, 591
TspDTI	ATGAA	5 cut(s)	101, 128, 345, 858, 937
TspRI	CASTG	6 cut(s)	243, 261, 286, 696, 775, 1350
VpaK11BI	GGWCC	1 cut(s)	490
VspI	ATTAAT	1 cut(s)	1443
XagI	CCTNNNNNAGG	1 cut(s)	51
XapI	RAATTY	4 cut(s)	943, 1114, 1294, 1419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	1 cut(s)	1196
ZrmI	AGTACT	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.