Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002191

Physical Location & Seq

Genomic Coordinates Reverse (-)

23534361 .. 23536263

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G233200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGCATGCACACACTGAGAGAGCCGTGGAGGACAAGCATTCACAGCCTCATGCTATCATGGTGCCTATGCCTCTCCAAGGCCATCTTCTCCCACATACCCATCTGGCCATGAAGCTTGCATCAAATGGTTTCACCATCACTTTTGTCAACACCCAACACATTCACCACCAGATATCCAAATCCCAACCCAATGACACTGAAGATCAAGATGACATCTTTGCCACAGCACGCAAGTCCGGCCTAGACATACGCTACAAGACCGTGAGTGATGGTTTTCCACTAGCCTTCAACCGATTTCAGAACCACAACCAAGCTGTTGAGGGCCTATTGTATGTCTTCCCTGCCCATGTTGATGAACTTGTTGGAAATTTAGTCCAATCTGACCCCTCGGTCACTTGCTTGATTGTTGATACCTTCCACCCATGGTCAGCAACCATAGCCAACAAATACAACCTTGTCAATATTTCCTTCTGGACTGAACCAGCTCTAGTCTTAAGCATCTACTATCACTTGGACCTCCTCAGAGAACGTGGTCATTATGGTTCACATGATAATCGAGAGGACACCGTTGATTATATACCGGGGGTGCAGGCTATTGAACCAAAGGACTTGATGTCACACCTCCAAGAAGCTGATATATCAACACCGATGCACCGAGCCCTACACAAGGCATTCCATGAAGTGCAAAGGGCAGATTTTATTTTGTGTAATACAGTACAAGAACTTGAATCAAACACCCTTTCAGCCTTGCAAGAGAAGCAACACACATATGCAATTGGCCCTGTTTCCCCCAATAATCCCACAAAAAGTATTGTGGCCACCAATCTGATGTCAGAGTTTGACTGCACAGAATGGCTCAACACCAAGCCTAATGGTTCAGTTTTGTTTGTTTCATTTGGTAGCTATGTTCTAGTTACTAAAAATGATATTGAAGAAATAGCTCATGGGCTCTTGCTTAGTAAAGTGAGTTTCATCTGGGTACTTCGCCCTAATACTACAAGTTATGATGAAACCTATATCCTACCTGTTGGATTTGAGAATGAGATTAAAGATAGAGGGTTGATGGTGCCATGGTGCTCTCAGATTGAGGTGCTTTCACATCCAGCAACAGGAGGGTTCTTGACTCATTGTGGATGGAACTCAATACTTGAAAGTATGTGGTGTGGTGTTCCCATGCTGTGCTTCCCTCTGTGGACTGATCAAGTGACCAATAGGAAACTAGTCGTTGATGATTGGGGGATTGGATTAAATCTCTGTGATAGGGTGAAACCCATCACAAGGGTGGAGGTAGCAGAGAAGATCAACCGTCTGATGAGTGGAAAATTGGGTGATGGATTGCAGAAGCAGAGCAAGAAGGTTAAGCAAACATTGGAGGATGCATTAGCTGTAAATGGATCATCACAAAAGAATTTATCTCAATTCATTGGTGATGTAAAGGCTGAAATTCAAAAACGAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

487

Amino Acids

54.69

Weight (kDa)

5.92

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36970
fragaria_vesca	FvH4_6g16230 FvH4_6g16230 FvH4_6g16250
malus_domestica	MD12G1114000.v1.1 MD12G1114100.v1.1 MD12G1114200.v1.1
prunus_persica	Prupe.6G233100_v2.0.a1 Prupe.6G233200_v2.0.a1 Prupe.6G233300_v2.0.a1 Prupe.6G233400_v2.0.a1 Prupe.6G233500_v2.0.a1 Prupe.6G233600_v2.0.a1 Prupe.6G233600_v2.0.a1
pyrus_communis	pycom12g11320 pycom12g11330 pycom12g11340
rosa_chinensis	RchiOBHm_Chr3g0470071 RchiOBHm_Chr3g0470101 RchiOBHm_Chr3g0470111
rosa_laevigata	RLG00000024296 RLG00000024298 RLG00000024299
rosa_multiflora	Rmu_sc0005600.1_g000011 Rmu_sc0005600.1_g000012 Rmu_sc0009114.1_g000016
rosa_roxburghii	Rroxscaffold_6G00411170 Rroxscaffold_6G00411180 Rroxscaffold_6G00411200
rosa_rugosa	Rorug03G0106700 Rorug03G0106700
rosa_samantha	Rh3AG155900 Rh3AG156200 Rh3BG180100 Rh3BG180200 Rh3CG170600 Rh3CG171000 Rh3DG195100
rosa_wichuraiana	Rw3G014680 Rw3G014690 Rw3G014700 Rw3G014760 Rw3G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	389
AccB1I	GGYRCC	2 cut(s)	61, 1066
AclWI	GGATC	1 cut(s)	1402
AcoI	YGGCCR	2 cut(s)	105, 816
AcsI	RAATTY	3 cut(s)	367, 1408, 1443
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	2 cut(s)	717, 981
AfiI	CCNNNNNNNGG	4 cut(s)	77, 667, 1109, 1278
AflII	CTTAAG	1 cut(s)	493
AgsI	TTSAA	6 cut(s)	289, 599, 728, 932, 1151, 1448
AhdI	GACNNNNNGTC	1 cut(s)	613
AhlI	ACTAGT	1 cut(s)	1219
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AleI	CACNNNNGTG	1 cut(s)	1280
AluBI	AGCT	7 cut(s)	115, 314, 485, 632, 903, 941, 1385
AluI	AGCT	7 cut(s)	115, 314, 485, 632, 903, 941, 1385
Alw21I	GWGCWC	1 cut(s)	1079
AlwI	GGATC	1 cut(s)	1402
AoxI	GGCC	6 cut(s)	79, 105, 238, 322, 778, 816
ApoI	RAATTY	3 cut(s)	367, 1408, 1443
AspS9I	GGNCC	3 cut(s)	322, 514, 779
AsuC2I	CCSGG	1 cut(s)	582
AsuHPI	GGTGA	5 cut(s)	124, 155, 1276, 1340, 1439
AvaII	GGWCC	1 cut(s)	514
BalI	TGGCCA	2 cut(s)	107, 818
BanI	GGYRCC	2 cut(s)	61, 1066
BanII	GRGCYC	2 cut(s)	661, 951
BbsI	GAAGAC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	1079
BccI	CCATC	8 cut(s)	90, 108, 143, 263, 1057, 1128, 1280, 1325
BceAI	ACGGC	1 cut(s)	8
BclI	TGATCA	1 cut(s)	1198
BcnI	CCSGG	1 cut(s)	582
BcuI	ACTAGT	1 cut(s)	1219
BfaI	CTAG	5 cut(s)	242, 281, 488, 911, 1220
BfrI	CTTAAG	1 cut(s)	493
Bme1390I	CCNGG	1 cut(s)	582
Bme18I	GGWCC	1 cut(s)	514
BmeRI	GACNNNNNGTC	1 cut(s)	613
BmgT120I	GGNCC	3 cut(s)	322, 514, 779
BmiI	GGNNCC	2 cut(s)	63, 1068
BmrFI	CCNGG	1 cut(s)	582
BmsI	GCATC	4 cut(s)	128, 507, 639, 1366
BpiI	GAAGAC	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	582
BsaJI	CCNNGG	6 cut(s)	24, 76, 387, 422, 581, 1070
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 667, 1109, 1278
BseDI	CCNNGG	6 cut(s)	24, 76, 387, 422, 581, 1070
BseGI	GGATG	3 cut(s)	1099, 1139, 1381
BseLI	CCNNNNNNNGG	4 cut(s)	77, 667, 1109, 1278
BseMII	CTCAG	3 cut(s)	6, 535, 1094
BseRI	GAGGAG	1 cut(s)	509
BsgI	GTGCAG	2 cut(s)	608, 829
BshFI	GGCC	6 cut(s)	81, 107, 240, 324, 780, 818
BshNI	GGYRCC	2 cut(s)	61, 1066
BsiHKAI	GWGCWC	1 cut(s)	1079
BsiSI	CCGG	2 cut(s)	237, 581
BslI	CCNNNNNNNGG	4 cut(s)	77, 667, 1109, 1278
BsmI	GAATGC	2 cut(s)	37, 671
BsnI	GGCC	6 cut(s)	81, 107, 240, 324, 780, 818
Bsp1286I	GDGCHC	3 cut(s)	661, 951, 1079
Bsp143I	GATC	4 cut(s)	202, 1198, 1299, 1394
Bsp19I	CCATGG	2 cut(s)	422, 1070
BspANI	GGCC	6 cut(s)	81, 107, 240, 324, 780, 818
BspCNI	CTCAG	3 cut(s)	7, 534, 1093
BspLI	GGNNCC	2 cut(s)	63, 1068
BspPI	GGATC	1 cut(s)	1402
BspT107I	GGYRCC	2 cut(s)	61, 1066
BspTI	CTTAAG	1 cut(s)	493
BssECI	CCNNGG	6 cut(s)	24, 76, 387, 422, 581, 1070
BssMI	GATC	4 cut(s)	202, 1198, 1299, 1394
BssT1I	CCWWGG	3 cut(s)	76, 422, 1070
Bst4CI	ACNGT	4 cut(s)	262, 568, 715, 1307
BstAFI	CTTAAG	1 cut(s)	493
BstC8I	GCNNGC	4 cut(s)	6, 117, 229, 591
BstDEI	CTNAG	4 cut(s)	15, 521, 956, 1080
BstDSI	CCRYGG	3 cut(s)	24, 422, 1070
BstENI	CCTNNNNNAGG	2 cut(s)	75, 665
BstF5I	GGATG	3 cut(s)	1099, 1139, 1381
BstKTI	GATC	4 cut(s)	205, 1201, 1302, 1397
BstMBI	GATC	4 cut(s)	202, 1198, 1299, 1394
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 237, 437, 757
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	580
BstV2I	GAAGAC	1 cut(s)	328
BsuRI	GGCC	6 cut(s)	81, 107, 240, 324, 780, 818
BtgI	CCRYGG	3 cut(s)	24, 422, 1070
BtsCI	GGATG	3 cut(s)	1099, 1139, 1381
BtsIMutI	CAGTG	2 cut(s)	12, 195
Cac8I	GCNNGC	4 cut(s)	6, 117, 229, 591
Cfr13I	GGNCC	3 cut(s)	322, 514, 779
Csp6I	GTAC	2 cut(s)	716, 980
CviQI	GTAC	2 cut(s)	716, 980
DdeI	CTNAG	4 cut(s)	15, 521, 956, 1080
DpnI	GATC	4 cut(s)	204, 1200, 1301, 1396
DpnII	GATC	4 cut(s)	202, 1198, 1299, 1394
DrdI	GACNNNNNNGTC	1 cut(s)	389
DriI	GACNNNNNGTC	1 cut(s)	613
DseDI	GACNNNNNNGTC	1 cut(s)	389
EaeI	YGGCCR	2 cut(s)	105, 816
Eam1105I	GACNNNNNGTC	1 cut(s)	613
Eco130I	CCWWGG	3 cut(s)	76, 422, 1070
Eco24I	GRGCYC	2 cut(s)	661, 951
Eco32I	GATATC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	219
EcoNI	CCTNNNNNAGG	2 cut(s)	75, 665
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRV	GATATC	1 cut(s)	174
EcoT14I	CCWWGG	3 cut(s)	76, 422, 1070
EcoT22I	ATGCAT	2 cut(s)	6, 1381
EcoT38I	GRGCYC	2 cut(s)	661, 951
ErhI	CCWWGG	3 cut(s)	76, 422, 1070
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FauNDI	CATATG	1 cut(s)	769
FbaI	TGATCA	1 cut(s)	1198
FokI	GGATG	3 cut(s)	1086, 1146, 1388
FriOI	GRGCYC	2 cut(s)	661, 951
FspBI	CTAG	5 cut(s)	242, 281, 488, 911, 1220
HaeIII	GGCC	6 cut(s)	81, 107, 240, 324, 780, 818
HapII	CCGG	2 cut(s)	237, 581
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	2 cut(s)	728, 1123
HpaII	CCGG	2 cut(s)	237, 581
HphI	GGTGA	5 cut(s)	124, 155, 1276, 1340, 1439
Hpy166II	GTNNAC	3 cut(s)	148, 545, 1194
Hpy188I	TCNGA	7 cut(s)	300, 382, 524, 828, 835, 1083, 1311
Hpy188III	TCNNGA	4 cut(s)	206, 472, 557, 1120
Hpy8I	GTNNAC	3 cut(s)	148, 545, 1194
HpyAV	CCTTC	4 cut(s)	295, 424, 478, 1348
HpyCH4III	ACNGT	4 cut(s)	262, 568, 715, 1307
HpyCH4IV	ACGT	1 cut(s)	529
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 237, 437, 757
HpyF3I	CTNAG	4 cut(s)	15, 521, 956, 1080
HpySE526I	ACGT	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	1198
Kzo9I	GATC	4 cut(s)	202, 1198, 1299, 1394
LweI	GCATC	4 cut(s)	128, 507, 639, 1366
MaeI	CTAG	5 cut(s)	242, 281, 488, 911, 1220
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	4 cut(s)	391, 615, 913, 1204
MalI	GATC	4 cut(s)	204, 1200, 1301, 1396
MboI	GATC	4 cut(s)	202, 1198, 1299, 1394
MboII	GAAGA	5 cut(s)	77, 212, 328, 944, 1309
MfeI	CAATTG	1 cut(s)	774
MhlI	GDGCHC	3 cut(s)	661, 951, 1079
MlsI	TGGCCA	2 cut(s)	107, 818
MluCI	AATT	6 cut(s)	367, 774, 1322, 1408, 1418, 1443
MluNI	TGGCCA	2 cut(s)	107, 818
MlyI	GAGTC	1 cut(s)	1117
MmeI	TCCRAC	2 cut(s)	343, 1009
Mox20I	TGGCCA	2 cut(s)	107, 818
Mph1103I	ATGCAT	2 cut(s)	6, 1381
MscI	TGGCCA	2 cut(s)	107, 818
MseI	TTAA	4 cut(s)	494, 1047, 1247, 1359
MslI	CAYNNNNRTG	3 cut(s)	351, 768, 1280
Msp20I	TGGCCA	2 cut(s)	107, 818
MspCI	CTTAAG	1 cut(s)	493
MspI	CCGG	2 cut(s)	237, 581
MspR9I	CCNGG	1 cut(s)	582
MunI	CAATTG	1 cut(s)	774
Mva1269I	GAATGC	2 cut(s)	37, 671
MwoI	GCNNNNNNNGC	4 cut(s)	43, 237, 437, 757
NciI	CCSGG	1 cut(s)	582
NcoI	CCATGG	2 cut(s)	422, 1070
NdeI	CATATG	1 cut(s)	769
NdeII	GATC	4 cut(s)	202, 1198, 1299, 1394
NlaIV	GGNNCC	2 cut(s)	63, 1068
NmuCI	GTSAC	3 cut(s)	391, 615, 1204
NsiI	ATGCAT	2 cut(s)	6, 1381
NspI	RCATGY	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	1280
PaeI	GCATGC	1 cut(s)	8
PctI	GAATGC	2 cut(s)	37, 671
PfeI	GAWTC	1 cut(s)	728
PleI	GAGTC	1 cut(s)	1117
PpsI	GAGTC	1 cut(s)	1117
PspN4I	GGNNCC	2 cut(s)	63, 1068
PspPI	GGNCC	3 cut(s)	322, 514, 779
RsaI	GTAC	2 cut(s)	717, 981
RsaNI	GTAC	2 cut(s)	716, 980
RseI	CAYNNNNRTG	3 cut(s)	351, 768, 1280
SaqAI	TTAA	4 cut(s)	494, 1047, 1247, 1359
Sau3AI	GATC	4 cut(s)	202, 1198, 1299, 1394
Sau96I	GGNCC	3 cut(s)	322, 514, 779
SchI	GAGTC	1 cut(s)	1117
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	3 cut(s)	661, 951, 1079
SfaNI	GCATC	4 cut(s)	128, 507, 639, 1366
SinI	GGWCC	1 cut(s)	514
SmiMI	CAYNNNNRTG	3 cut(s)	351, 768, 1280
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
SpeI	ACTAGT	1 cut(s)	1219
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	6 cut(s)	367, 774, 1322, 1408, 1418, 1443
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	5 cut(s)	242, 281, 488, 911, 1220
StyD4I	CCNGG	1 cut(s)	580
StyI	CCWWGG	3 cut(s)	76, 422, 1070
TaaI	ACNGT	4 cut(s)	262, 568, 715, 1307
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	1 cut(s)	556
TaqII	GACCGA	1 cut(s)	379
TasI	AATT	6 cut(s)	367, 774, 1322, 1408, 1418, 1443
TatI	WGTACW	1 cut(s)	715
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	4 cut(s)	494, 1047, 1247, 1359
Tru9I	TTAA	4 cut(s)	494, 1047, 1247, 1359
TscAI	CASTG	2 cut(s)	19, 202
TseFI	GTSAC	3 cut(s)	391, 615, 1204
Tsp45I	GTSAC	3 cut(s)	391, 615, 1204
TspDTI	ATGAA	7 cut(s)	125, 369, 693, 882, 961, 1023, 1411
TspRI	CASTG	2 cut(s)	19, 202
Vha464I	CTTAAG	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	514
XagI	CCTNNNNNAGG	2 cut(s)	75, 665
XapI	RAATTY	3 cut(s)	367, 1408, 1443
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1279
XspI	CTAG	5 cut(s)	242, 281, 488, 911, 1220
Zsp2I	ATGCAT	2 cut(s)	6, 1381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.