RLG00000024296

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002191
Physical Location & Seq
Reverse (-)
34213785 .. 34215531
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024296

Sequence Viewer

Length: 1455 bp
ATGGAGGCCAATCACCCAAAGCCTCATGCAATCATGGTACCTCTTTCTCTCCAAGGCCATGTCAACCCCTTCGCCCAGTTGGCCATGAACCTTGCATCAAATGGCTTCACCATCACTTTTGTCAACACTCAATACGTTCATCACCAGATAACCAGATCCAAACCCAAGAACAACACTACACAAGAACAAGATCAAGATCAAGATGACATCTTTGCGGCGGCGCGTGAGTCCGGCCTTGACATACGCTATAGAACAGTGAGTGATGCTTTCCCACTGTCCTTCAATCGGTTTCAGAACCTTGACCAATTTCTTGAGGGCTATATCCATGTCTTCCCTGCCCATGTTGATGAACTTGTTGGAGATTTAGTACAGTCTGACCCCTCAATCAATTGTTTGATTGCTGACACCTTCTACACATGGCCGGTGATGATAGCCAACAAGTACAACCTTATCAATATCTCCTTCTGGACTGAACCAGCTTTAGTCTTAAACATTTACTACCACTCGGACCTCCTCATAAAACATGGTCATTTTGGTTGTCATGATAAGTGTGAGGACACCATAGATTACATACCTGGTGTGCAGGCTATTGAACCAAAGGACTTGATGTCACACCTATACATTACTGATACCTCAGCTCCGATGCTGCGAATCGTTAAGAAGGCGTTCCGCGAAGTTAAAAGGGCAGATTTTATACTGTGTAATACAGTTCAAGAACTAGAAGCAGAGTCTCTTTCAGCCTTGCAAGACAAGCAACCTACATATGCAATTGGCCCTGTCTTCCCCAGTGAACCCACCAAGAATGTTGTGGCTACAAATCTGATGTCCGAGATTGACTGTACACAATGGCTCAAAACCAAGCCTCAAGGTTCAGTTTTGTATGTTTCATTTGGTAGCTATTGTCAGCTTACTAAGAATGAGTTTGAGGAAATAGCTCAGGGGCTTTTGCTTAGTGAAGTGAATTTCATTTGGGTACTACGGCCTGACACTATAAGCTATGACGAAGAAAGGTATATTGTTCCCTTTGGATTGGAAGACCAGAGCGATAGAGGGTTAATGGTGCCTTGGTGTTCTCAGGTTGAGGTGCTCTCAAATCCAGCAATAGGAGGGTTCTTAACTCATTGTGGATGGAATTCCATACTGGAAAGTATGTGGTTTGGTGTTCCAATGCTGTGTTTTCCTATTGAAACTGACCAAATCACTAATAGGAGACTAGTGGTTGATGATTGGAGGATTGGTCTCAATCTTTGTGACAGGAAGCCAATCACAAGGTTGGAGGTAGCACAGAAGGTCAACCGTCTGATGAGTGGAAATTTGGGTGATCGAATATTGCAGAAGGAGATCAAGAAGGCAAAGCAGACATTAGAGGATGCTTTGGCTGCAGATGGGTCATCACAACAGAGTTTCCGCCGATTTATTAGTGACGTAAAGGCTAAAATTCAAATACGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

485

Amino Acids

55.06

Weight (kDa)

5.35

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 289 - 411 2e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 37
AccB1I GGYRCC 2 cut(s) 37, 1060
AccII CGCG 2 cut(s) 223, 672
AciI CCGC 4 cut(s) 215, 218, 670, 1408
AclWI GGATC 1 cut(s) 150
AcoI YGGCCR 2 cut(s) 81, 419
AcsI RAATTY 4 cut(s) 961, 1132, 1312, 1437
AfaI GTAC 5 cut(s) 39, 369, 443, 841, 975
AfiI CCNNNNNNNGG 2 cut(s) 285, 1103
AgsI TTSAA 5 cut(s) 283, 593, 713, 1187, 1442
AhdI GACNNNNNGTC 1 cut(s) 607
AhlI ACTAGT 1 cut(s) 1213
AjnI CCWGG 1 cut(s) 574
AluBI AGCT 6 cut(s) 479, 638, 897, 907, 935, 996
AluI AGCT 6 cut(s) 479, 638, 897, 907, 935, 996
Alw21I GWGCWC 1 cut(s) 1089
Alw26I GTCTC 3 cut(s) 735, 1204, 1244
AlwI GGATC 1 cut(s) 150
AoxI GGCC 7 cut(s) 6, 55, 81, 232, 419, 772, 980
ApeKI GCWGC 2 cut(s) 646, 1379
ApoI RAATTY 4 cut(s) 961, 1132, 1312, 1437
ArsI GACNNNNNNTTYG 2 cut(s) 809, 841
Asp700I GAANNNNTTC 1 cut(s) 665
Asp718I GGTACC 1 cut(s) 37
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 2 cut(s) 508, 773
AsuHPI GGTGA 5 cut(s) 5, 100, 134, 436, 1331
AvaII GGWCC 1 cut(s) 508
BalI TGGCCA 1 cut(s) 83
BanI GGYRCC 2 cut(s) 37, 1060
BbsI GAAGAC 3 cut(s) 322, 772, 1041
Bbv12I GWGCWC 1 cut(s) 1089
BbvCI CCTCAGC 1 cut(s) 634
BbvI GCAGC 2 cut(s) 633, 1366
BccI CCATC 3 cut(s) 119, 1122, 1379
BceAI ACGGC 1 cut(s) 995
BciT130I CCWGG 1 cut(s) 576
BcoDI GTCTC 3 cut(s) 735, 1204, 1244
BcuI ACTAGT 1 cut(s) 1213
BfaI CTAG 2 cut(s) 719, 1214
BfmI CTRYAG 2 cut(s) 247, 1380
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 4 cut(s) 216, 219, 647, 1380
BlsI GCNGC 4 cut(s) 217, 220, 648, 1381
Bme1390I CCNGG 1 cut(s) 576
Bme18I GGWCC 1 cut(s) 508
BmeRI GACNNNNNGTC 1 cut(s) 607
BmgT120I GGNCC 2 cut(s) 508, 773
BmiI GGNNCC 2 cut(s) 39, 1062
BmrFI CCNGG 1 cut(s) 576
BmrI ACTGGG 2 cut(s) 70, 780
BmsI GCATC 4 cut(s) 104, 253, 633, 1360
BmuI ACTGGG 2 cut(s) 70, 780
BpiI GAAGAC 3 cut(s) 322, 772, 1041
BplI GAGNNNNNCTC 2 cut(s) 1073, 1105
Bpu10I CCTNAGC 2 cut(s) 634, 936
BpuEI CTTGAG 2 cut(s) 332, 849
BsaBI GATNNNNATC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 1244
BsaJI CCNNGG 2 cut(s) 52, 1064
BsaXI ACNNNNNCTCC 6 cut(s) 351, 381, 622, 652, 1222, 1252
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 1103
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 3 cut(s) 76, 786, 1146
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 1 cut(s) 576
BseDI CCNNGG 2 cut(s) 52, 1064
BseGI GGATG 2 cut(s) 1133, 1375
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 285, 1103
BseMII CTCAG 3 cut(s) 648, 950, 1088
BseNI ACTGG 3 cut(s) 76, 786, 1146
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 2 cut(s) 633, 1366
BsgI GTGCAG 1 cut(s) 602
Bsh1236I CGCG 2 cut(s) 223, 672
BshFI GGCC 7 cut(s) 8, 57, 83, 234, 421, 774, 982
BshNI GGYRCC 2 cut(s) 37, 1060
BsiHKAI GWGCWC 1 cut(s) 1089
BsiSI CCGG 2 cut(s) 231, 422
BslI CCNNNNNNNGG 2 cut(s) 285, 1103
BsmAI GTCTC 3 cut(s) 735, 1204, 1244
BsnI GGCC 7 cut(s) 8, 57, 83, 234, 421, 774, 982
Bso31I GGTCTC 1 cut(s) 1244
Bsp1286I GDGCHC 1 cut(s) 1089
Bsp1407I TGTACA 1 cut(s) 839
Bsp143I GATC 5 cut(s) 155, 190, 196, 1321, 1341
BspACI CCGC 4 cut(s) 215, 218, 670, 1408
BspANI GGCC 7 cut(s) 8, 57, 83, 234, 421, 774, 982
BspCNI CTCAG 3 cut(s) 647, 949, 1087
BspFNI CGCG 2 cut(s) 223, 672
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 39, 1062
BspMAI CTGCAG 1 cut(s) 1384
BspPI GGATC 1 cut(s) 150
BspT107I GGYRCC 2 cut(s) 37, 1060
BspTNI GGTCTC 1 cut(s) 1244
BsrFI RCCGGY 1 cut(s) 421
BsrGI TGTACA 1 cut(s) 839
BsrI ACTGG 3 cut(s) 76, 786, 1146
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 2 cut(s) 52, 1064
BssMI GATC 5 cut(s) 155, 190, 196, 1321, 1341
BssT1I CCWWGG 2 cut(s) 52, 1064
Bst2UI CCWGG 1 cut(s) 576
Bst4CI ACNGT 7 cut(s) 256, 276, 372, 699, 709, 839, 1298
BstAUI TGTACA 1 cut(s) 839
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 5 cut(s) 634, 912, 936, 950, 1074
BstF5I GGATG 2 cut(s) 1133, 1375
BstFNI CGCG 2 cut(s) 223, 672
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 5 cut(s) 158, 193, 199, 1324, 1344
BstMAI GTCTC 3 cut(s) 735, 1204, 1244
BstMBI GATC 5 cut(s) 155, 190, 196, 1321, 1341
BstMWI GCNNNNNNNGC 3 cut(s) 80, 751, 1379
BstNI CCWGG 1 cut(s) 576
BstSCI CCNGG 1 cut(s) 574
BstSFI CTRYAG 2 cut(s) 247, 1380
BstUI CGCG 2 cut(s) 223, 672
BstV1I GCAGC 2 cut(s) 633, 1366
BstV2I GAAGAC 3 cut(s) 322, 772, 1041
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 7 cut(s) 8, 57, 83, 234, 421, 774, 982
BtsCI GGATG 2 cut(s) 1133, 1375
BtsIMutI CAGTG 3 cut(s) 261, 272, 793
Cac8I GCNNGC 1 cut(s) 585
CciI TCATGA 1 cut(s) 541
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 2 cut(s) 508, 773
CsiI ACCWGGT 1 cut(s) 574
Csp6I GTAC 5 cut(s) 38, 368, 442, 840, 974
CviAII CATG 9 cut(s) 26, 34, 59, 85, 326, 341, 417, 524, 542
CviQI GTAC 5 cut(s) 38, 368, 442, 840, 974
DdeI CTNAG 5 cut(s) 634, 912, 936, 950, 1074
DpnI GATC 5 cut(s) 157, 192, 198, 1323, 1343
DpnII GATC 5 cut(s) 155, 190, 196, 1321, 1341
DriI GACNNNNNGTC 1 cut(s) 607
EaeI YGGCCR 2 cut(s) 81, 419
Eam1105I GACNNNNNGTC 1 cut(s) 607
EciI GGCGGA 1 cut(s) 1397
Eco130I CCWWGG 2 cut(s) 52, 1064
Eco31I GGTCTC 1 cut(s) 1244
Eco47I GGWCC 1 cut(s) 508
EcoRI GAATTC 1 cut(s) 1132
EcoRII CCWGG 1 cut(s) 574
EcoT14I CCWWGG 2 cut(s) 52, 1064
ErhI CCWWGG 2 cut(s) 52, 1064
FaeI CATG 9 cut(s) 29, 37, 62, 88, 329, 344, 420, 527, 545
FatI CATG 9 cut(s) 25, 33, 58, 84, 325, 340, 416, 523, 541
FauNDI CATATG 1 cut(s) 763
Fnu4HI GCNGC 4 cut(s) 216, 219, 647, 1380
FokI GGATG 2 cut(s) 1140, 1382
Fsp4HI GCNGC 4 cut(s) 216, 219, 647, 1380
FspBI CTAG 2 cut(s) 719, 1214
GlaI GCGC 1 cut(s) 222
GluI GCNGC 4 cut(s) 216, 219, 647, 1380
HaeIII GGCC 7 cut(s) 8, 57, 83, 234, 421, 774, 982
HapII CCGG 2 cut(s) 231, 422
HhaI GCGC 1 cut(s) 223
Hin1II CATG 9 cut(s) 29, 37, 62, 88, 329, 344, 420, 527, 545
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HincII GTYRAC 3 cut(s) 64, 124, 1294
HindII GTYRAC 3 cut(s) 64, 124, 1294
HinfI GANTC 3 cut(s) 227, 651, 728
HpaII CCGG 2 cut(s) 231, 422
HphI GGTGA 5 cut(s) 5, 100, 134, 436, 1331
Hpy166II GTNNAC 5 cut(s) 64, 124, 791, 842, 1294
Hpy188I TCNGA 7 cut(s) 294, 376, 508, 642, 822, 829, 1302
Hpy188III TCNNGA 7 cut(s) 194, 200, 311, 466, 542, 713, 1345
Hpy8I GTNNAC 5 cut(s) 64, 124, 791, 842, 1294
HpyAV CCTTC 8 cut(s) 79, 289, 418, 472, 655, 1282, 1330, 1342
HpyCH4III ACNGT 7 cut(s) 256, 276, 372, 699, 709, 839, 1298
HpyCH4IV ACGT 2 cut(s) 135, 1425
HpyCH4V TGCA 7 cut(s) 29, 95, 583, 745, 767, 1333, 1382
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 751, 1379
HpyF3I CTNAG 5 cut(s) 634, 912, 936, 950, 1074
HpySE526I ACGT 2 cut(s) 135, 1425
Hsp92II CATG 9 cut(s) 29, 37, 62, 88, 329, 344, 420, 527, 545
HspAI GCGC 1 cut(s) 221
KpnI GGTACC 1 cut(s) 41
Kzo9I GATC 5 cut(s) 155, 190, 196, 1321, 1341
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 2 cut(s) 633, 1366
LweI GCATC 4 cut(s) 104, 253, 633, 1360
MabI ACCWGGT 1 cut(s) 574
MaeI CTAG 2 cut(s) 719, 1214
MaeII ACGT 2 cut(s) 135, 1425
MaeIII GTNAC 3 cut(s) 609, 1250, 1421
MalI GATC 5 cut(s) 157, 192, 198, 1323, 1343
MboI GATC 5 cut(s) 155, 190, 196, 1321, 1341
MboII GAAGA 4 cut(s) 322, 772, 1016, 1046
MfeI CAATTG 2 cut(s) 388, 768
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 1089
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 7 cut(s) 305, 388, 768, 961, 1132, 1312, 1437
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 2 cut(s) 236, 737
MmeI TCCRAC 2 cut(s) 337, 1254
Mox20I TGGCCA 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 665
MscI TGGCCA 1 cut(s) 83
MseI TTAA 5 cut(s) 488, 657, 678, 1055, 1115
MslI CAYNNNNRTG 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 83
MspI CCGG 2 cut(s) 231, 422
MspR9I CCNGG 1 cut(s) 576
MunI CAATTG 2 cut(s) 388, 768
MvaI CCWGG 1 cut(s) 576
MvnI CGCG 2 cut(s) 223, 672
MwoI GCNNNNNNNGC 3 cut(s) 80, 751, 1379
NdeI CATATG 1 cut(s) 763
NdeII GATC 5 cut(s) 155, 190, 196, 1321, 1341
NlaIII CATG 9 cut(s) 29, 37, 62, 88, 329, 344, 420, 527, 545
NlaIV GGNNCC 2 cut(s) 39, 1062
NmuCI GTSAC 3 cut(s) 609, 1250, 1421
PagI TCATGA 1 cut(s) 541
PdmI GAANNNNTTC 1 cut(s) 665
PfeI GAWTC 1 cut(s) 651
PkrI GCNGC 4 cut(s) 217, 220, 648, 1381
PleI GAGTC 2 cut(s) 235, 736
PpsI GAGTC 2 cut(s) 235, 736
Psp6I CCWGG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 574
PspN4I GGNNCC 2 cut(s) 39, 1062
PspPI GGNCC 2 cut(s) 508, 773
PstI CTGCAG 1 cut(s) 1384
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 5 cut(s) 39, 369, 443, 841, 975
RsaNI GTAC 5 cut(s) 38, 368, 442, 840, 974
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 5 cut(s) 488, 657, 678, 1055, 1115
SatI GCNGC 4 cut(s) 216, 219, 647, 1380
Sau3AI GATC 5 cut(s) 155, 190, 196, 1321, 1341
Sau96I GGNCC 2 cut(s) 508, 773
SchI GAGTC 2 cut(s) 236, 737
ScrFI CCNGG 1 cut(s) 576
SduI GDGCHC 1 cut(s) 1089
SexAI ACCWGGT 1 cut(s) 574
SfaNI GCATC 4 cut(s) 104, 253, 633, 1360
SfcI CTRYAG 2 cut(s) 247, 1380
SinI GGWCC 1 cut(s) 508
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 2 cut(s) 311, 864
SmoI CTYRAG 2 cut(s) 311, 864
SpeI ACTAGT 1 cut(s) 1213
Sse9I AATT 7 cut(s) 305, 388, 768, 961, 1132, 1312, 1437
SsiI CCGC 4 cut(s) 215, 218, 670, 1408
SspI AATATT 1 cut(s) 1329
SspMI CTAG 2 cut(s) 719, 1214
StyD4I CCNGG 1 cut(s) 574
StyI CCWWGG 2 cut(s) 52, 1064
TaaI ACNGT 7 cut(s) 256, 276, 372, 699, 709, 839, 1298
TaiI ACGT 2 cut(s) 138, 1428
TaqI TCGA 1 cut(s) 1324
TasI AATT 7 cut(s) 305, 388, 768, 961, 1132, 1312, 1437
TatI WGTACW 3 cut(s) 367, 441, 839
TauI GCSGC 2 cut(s) 218, 221
TfiI GAWTC 1 cut(s) 651
Tru1I TTAA 5 cut(s) 488, 657, 678, 1055, 1115
Tru9I TTAA 5 cut(s) 488, 657, 678, 1055, 1115
TscAI CASTG 3 cut(s) 261, 279, 793
TseFI GTSAC 3 cut(s) 609, 1250, 1421
TseI GCWGC 2 cut(s) 646, 1379
Tsp45I GTSAC 3 cut(s) 609, 1250, 1421
TspDTI ATGAA 5 cut(s) 101, 128, 363, 876, 955
TspRI CASTG 3 cut(s) 261, 279, 793
VpaK11BI GGWCC 1 cut(s) 508
XapI RAATTY 4 cut(s) 961, 1132, 1312, 1437
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XmnI GAANNNNTTC 1 cut(s) 665
XspI CTAG 2 cut(s) 719, 1214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.