RchiOBHm_Chr3g0470101

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
16080982 .. 16082920
1939 bp
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UTR
Exon/CDS
Intron
PRQ43592

Sequence Viewer

Length: 1518 bp
ATGGAGGCCAATCACCCAAAGCCACATGCAATCATGGTACCTGTTCCTCTCCAAGGCCATGTCAACCCCTTCACCCACTTGGCCGTGAACCTTGCATCAAATGGCTTCACCATCACTTTTGTCAACACTCAATACATTCATCACCAGATAACCAAATCCAAAACAAAAAACAACACTACACAAGAGCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATGACATCTTTGCAGCGGCGCGTGAGTCCGGCCTTGACATACGCTATAGAACAGTGAGCGATGCTTTCCCACTGCCCTTCAATCGGTTTCAGAACAGTGACCAATTTCTTGAGGGTAGTATCCATGTCTTCCCTGCCCATGTTGATGAACTTGTTGGAGATTTAGTACAATCTGACCCCTCAATCAATTGTTTGATTGCTGACACCTTCTACACATGGCCACTGATGATAGCCAACAAGTACAACCTTATCAATATCTCCTTCTGGACTGAACCAGCTTTAGTCTTAAACATTTACTACCACTTGGACCTCCTCATAAAACATGGTCATTTTGGTTGTCATGATAATTGTGAGGACACCATAGATTACATACCTGGTGTGCAGGCTATTGAACCAAAGGATTTGATGTCACACCTGTACATTACTGATACCTCAGCTCCGATGCTGCGAATCATTAAGAAGGCGTTCCGCGAAGTTAAGAGGGCAGATTTTATACTGTGTAATACAGTGCAAGTACTTGAAGCAGAGTCTCTTTCAGCCTTGCAAGACAAGCAACCTACATATGCAATTGGCCCTGTCTTCCCCACTGAACCCACCAAGAATGTTGTGGCTACTAATCTGATGTCCGAGATTGACTGTACACAATGGCTCAAGACCAAGCCTCAAGGTTCAGTTTTGTATGTTTCATTTGGTAGCTATTGTCAGGTTACTAAGAATGAGTTTGAGGAAATAGCTCAGGGGCTTTTGCTTAGTAAAGTGAATTTCATTTGGGTACTACGCCCTGACACTATAAGCTATGACAAAGAAAGGTATATTGTTCCCTTTGGATTGGAAGACCAGAGCGATAGAGGGTTAATGGTGCCTTGGTGTTCTCAGGTTGAGGTGCTCTCAAATCCAGCGATAGGAGGGTTCTTAACTCATTGTGGATGGAATTCCATACTGGAAAGTATGTGGTTTGGTGTTCCAATGCTGTGTTTTCCTATTGAAACTGACCAAATCACTAATAGGAAACTAGTGGTTGATGATTGGAGGATTGGTCTCAATCTTTGTGACAGGAAGCCAATCACAAGGTTGGAGGTAGCACAGAAGGTCAACCGTCTGATGGGTGGAAATTTGGGTGAGCGACTATTGCAGAAGGAGATCAAGAAGGCAAAGCAGACATTGGAGGAAGCTTTGGCTGCAGATGGGTCATCACAACAGAGTTTCCGCCGATTTATTAGTGATGTAAAGGCTAAAATTCAAACACGCATTTCAGACATTAATATTTGCAAGACATTGACGAAGAATATGAAAATATAA
Functional Annotation

Protein Analysis

505

Amino Acids

57.36

Weight (kDa)

5.64

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 11 - 55 3.8e-06 Glycosyltransferase, N-terminal domain
UDPGT PF00201 295 - 417 2e-17 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 37
AccB1I GGYRCC 2 cut(s) 37, 1078
AccII CGCG 2 cut(s) 241, 690
AciI CCGC 3 cut(s) 236, 688, 1426
AcoI YGGCCR 2 cut(s) 81, 437
AcsI RAATTY 4 cut(s) 979, 1150, 1330, 1455
AfaI GTAC 7 cut(s) 39, 387, 461, 638, 735, 859, 993
AfiI CCNNNNNNNGG 4 cut(s) 53, 303, 1121, 1321
AgsI TTSAA 5 cut(s) 301, 611, 740, 1205, 1460
AhlI ACTAGT 1 cut(s) 1231
AjnI CCWGG 1 cut(s) 592
AluBI AGCT 6 cut(s) 497, 656, 915, 953, 1014, 1391
AluI AGCT 6 cut(s) 497, 656, 915, 953, 1014, 1391
Alw21I GWGCWC 1 cut(s) 1107
Alw26I GTCTC 2 cut(s) 753, 1262
AoxI GGCC 6 cut(s) 6, 55, 81, 250, 437, 790
ApeKI GCWGC 3 cut(s) 233, 664, 1397
ApoI RAATTY 4 cut(s) 979, 1150, 1330, 1455
AseI ATTAAT 1 cut(s) 1479
Asp700I GAANNNNTTC 1 cut(s) 683
Asp718I GGTACC 1 cut(s) 37
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 2 cut(s) 526, 791
AsuHPI GGTGA 5 cut(s) 5, 64, 100, 134, 1349
AvaII GGWCC 1 cut(s) 526
BalI TGGCCA 1 cut(s) 439
BanI GGYRCC 2 cut(s) 37, 1078
BbsI GAAGAC 3 cut(s) 340, 790, 1059
Bbv12I GWGCWC 1 cut(s) 1107
BbvCI CCTCAGC 1 cut(s) 652
BbvI GCAGC 3 cut(s) 245, 651, 1384
BccI CCATC 4 cut(s) 119, 1140, 1315, 1397
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 594
BciVI GTATCC 1 cut(s) 350
BcoDI GTCTC 2 cut(s) 753, 1262
BcuI ACTAGT 1 cut(s) 1231
BfaI CTAG 1 cut(s) 1232
BfmI CTRYAG 2 cut(s) 265, 1398
BfuI GTATCC 1 cut(s) 350
BisI GCNGC 4 cut(s) 234, 237, 665, 1398
BlsI GCNGC 4 cut(s) 235, 238, 666, 1399
BmcAI AGTACT 1 cut(s) 735
Bme1390I CCNGG 1 cut(s) 594
Bme18I GGWCC 1 cut(s) 526
BmgT120I GGNCC 2 cut(s) 526, 791
BmiI GGNNCC 2 cut(s) 39, 1080
BmrFI CCNGG 1 cut(s) 594
BmsI GCATC 3 cut(s) 104, 271, 651
BpiI GAAGAC 3 cut(s) 340, 790, 1059
BplI GAGNNNNNCTC 2 cut(s) 1091, 1123
Bpu10I CCTNAGC 2 cut(s) 652, 954
BpuEI CTTGAG 3 cut(s) 350, 854, 867
BsaBI GATNNNNATC 4 cut(s) 195, 201, 207, 213
BsaI GGTCTC 1 cut(s) 1262
BsaJI CCNNGG 2 cut(s) 52, 1082
BsaXI ACNNNNNCTCC 6 cut(s) 369, 399, 640, 670, 1240, 1270
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 303, 1121, 1321
Bse1I ACTGG 1 cut(s) 1164
Bse8I GATNNNNATC 4 cut(s) 195, 201, 207, 213
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 2 cut(s) 52, 1082
BseGI GGATG 1 cut(s) 1151
BseJI GATNNNNATC 4 cut(s) 195, 201, 207, 213
BseLI CCNNNNNNNGG 4 cut(s) 53, 303, 1121, 1321
BseMII CTCAG 3 cut(s) 666, 968, 1106
BseNI ACTGG 1 cut(s) 1164
BseRI GAGGAG 1 cut(s) 521
BseXI GCAGC 3 cut(s) 245, 651, 1384
BsgI GTGCAG 1 cut(s) 620
Bsh1236I CGCG 2 cut(s) 241, 690
BshFI GGCC 6 cut(s) 8, 57, 83, 252, 439, 792
BshNI GGYRCC 2 cut(s) 37, 1078
BsiHKAI GWGCWC 1 cut(s) 1107
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 4 cut(s) 53, 303, 1121, 1321
BsmAI GTCTC 2 cut(s) 753, 1262
BsnI GGCC 6 cut(s) 8, 57, 83, 252, 439, 792
Bso31I GGTCTC 1 cut(s) 1262
Bsp1286I GDGCHC 1 cut(s) 1107
Bsp1407I TGTACA 2 cut(s) 636, 857
Bsp143I GATC 6 cut(s) 190, 196, 202, 208, 214, 1359
BspACI CCGC 3 cut(s) 236, 688, 1426
BspANI GGCC 6 cut(s) 8, 57, 83, 252, 439, 792
BspCNI CTCAG 3 cut(s) 665, 967, 1105
BspFNI CGCG 2 cut(s) 241, 690
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 2 cut(s) 39, 1080
BspMAI CTGCAG 1 cut(s) 1402
BspT107I GGYRCC 2 cut(s) 37, 1078
BspTNI GGTCTC 1 cut(s) 1262
BsrGI TGTACA 2 cut(s) 636, 857
BsrI ACTGG 1 cut(s) 1164
BssECI CCNNGG 2 cut(s) 52, 1082
BssMI GATC 6 cut(s) 190, 196, 202, 208, 214, 1359
BssT1I CCWWGG 2 cut(s) 52, 1082
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 6 cut(s) 274, 317, 717, 727, 857, 1316
BstAUI TGTACA 2 cut(s) 636, 857
BstC8I GCNNGC 1 cut(s) 603
BstDEI CTNAG 5 cut(s) 652, 930, 954, 968, 1092
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 1151
BstFNI CGCG 2 cut(s) 241, 690
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 6 cut(s) 193, 199, 205, 211, 217, 1362
BstMAI GTCTC 2 cut(s) 753, 1262
BstMBI GATC 6 cut(s) 190, 196, 202, 208, 214, 1359
BstMWI GCNNNNNNNGC 3 cut(s) 769, 1348, 1397
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 592
BstSFI CTRYAG 2 cut(s) 265, 1398
BstUI CGCG 2 cut(s) 241, 690
BstV1I GCAGC 3 cut(s) 245, 651, 1384
BstV2I GAAGAC 3 cut(s) 340, 790, 1059
BsuI GTATCC 1 cut(s) 350
BsuRI GGCC 6 cut(s) 8, 57, 83, 252, 439, 792
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 1 cut(s) 1151
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 6 cut(s) 279, 290, 322, 440, 732, 804
Cac8I GCNNGC 1 cut(s) 603
CciI TCATGA 1 cut(s) 559
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 526, 791
CsiI ACCWGGT 1 cut(s) 592
Csp6I GTAC 7 cut(s) 38, 386, 460, 637, 734, 858, 992
CviAII CATG 8 cut(s) 26, 34, 59, 344, 359, 435, 542, 560
CviQI GTAC 7 cut(s) 38, 386, 460, 637, 734, 858, 992
DdeI CTNAG 5 cut(s) 652, 930, 954, 968, 1092
DpnI GATC 6 cut(s) 192, 198, 204, 210, 216, 1361
DpnII GATC 6 cut(s) 190, 196, 202, 208, 214, 1359
EaeI YGGCCR 2 cut(s) 81, 437
EciI GGCGGA 1 cut(s) 1415
Eco130I CCWWGG 2 cut(s) 52, 1082
Eco31I GGTCTC 1 cut(s) 1262
Eco47I GGWCC 1 cut(s) 526
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 1150
EcoRII CCWGG 1 cut(s) 592
EcoT14I CCWWGG 2 cut(s) 52, 1082
ErhI CCWWGG 2 cut(s) 52, 1082
FaeI CATG 8 cut(s) 29, 37, 62, 347, 362, 438, 545, 563
FatI CATG 8 cut(s) 25, 33, 58, 343, 358, 434, 541, 559
FauNDI CATATG 1 cut(s) 781
Fnu4HI GCNGC 4 cut(s) 234, 237, 665, 1398
FokI GGATG 1 cut(s) 1158
Fsp4HI GCNGC 4 cut(s) 234, 237, 665, 1398
FspBI CTAG 1 cut(s) 1232
GlaI GCGC 1 cut(s) 240
GluI GCNGC 4 cut(s) 234, 237, 665, 1398
HaeIII GGCC 6 cut(s) 8, 57, 83, 252, 439, 792
HapII CCGG 1 cut(s) 249
HhaI GCGC 1 cut(s) 241
Hin1II CATG 8 cut(s) 29, 37, 62, 347, 362, 438, 545, 563
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 3 cut(s) 64, 124, 1312
HindII GTYRAC 3 cut(s) 64, 124, 1312
HindIII AAGCTT 1 cut(s) 1389
HinfI GANTC 3 cut(s) 245, 669, 746
HpaII CCGG 1 cut(s) 249
HphI GGTGA 5 cut(s) 5, 64, 100, 134, 1349
Hpy166II GTNNAC 5 cut(s) 64, 88, 124, 860, 1312
Hpy188I TCNGA 7 cut(s) 312, 394, 660, 840, 847, 1320, 1474
Hpy8I GTNNAC 5 cut(s) 64, 88, 124, 860, 1312
HpyAV CCTTC 8 cut(s) 79, 307, 436, 490, 673, 1300, 1348, 1360
HpyCH4III ACNGT 6 cut(s) 274, 317, 717, 727, 857, 1316
HpyF10VI GCNNNNNNNGC 3 cut(s) 769, 1348, 1397
HpyF3I CTNAG 5 cut(s) 652, 930, 954, 968, 1092
Hsp92II CATG 8 cut(s) 29, 37, 62, 347, 362, 438, 545, 563
HspAI GCGC 1 cut(s) 239
KpnI GGTACC 1 cut(s) 41
Kzo9I GATC 6 cut(s) 190, 196, 202, 208, 214, 1359
LmnI GCTCC 1 cut(s) 661
Lsp1109I GCAGC 3 cut(s) 245, 651, 1384
LweI GCATC 3 cut(s) 104, 271, 651
MabI ACCWGGT 1 cut(s) 592
MaeI CTAG 1 cut(s) 1232
MaeIII GTNAC 4 cut(s) 317, 627, 925, 1268
MalI GATC 6 cut(s) 192, 198, 204, 210, 216, 1361
MboI GATC 6 cut(s) 190, 196, 202, 208, 214, 1359
MboII GAAGA 4 cut(s) 340, 790, 1064, 1513
MfeI CAATTG 2 cut(s) 406, 786
MhlI GDGCHC 1 cut(s) 1107
MlsI TGGCCA 1 cut(s) 439
MluCI AATT 8 cut(s) 323, 406, 565, 786, 979, 1150, 1330, 1455
MluNI TGGCCA 1 cut(s) 439
MlyI GAGTC 2 cut(s) 254, 755
MmeI TCCRAC 2 cut(s) 355, 1272
Mox20I TGGCCA 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 683
MscI TGGCCA 1 cut(s) 439
MseI TTAA 6 cut(s) 506, 675, 696, 1073, 1133, 1479
MslI CAYNNNNRTG 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 439
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 594
MunI CAATTG 2 cut(s) 406, 786
MvaI CCWGG 1 cut(s) 594
MvnI CGCG 2 cut(s) 241, 690
MwoI GCNNNNNNNGC 3 cut(s) 769, 1348, 1397
NdeI CATATG 1 cut(s) 781
NdeII GATC 6 cut(s) 190, 196, 202, 208, 214, 1359
NlaIII CATG 8 cut(s) 29, 37, 62, 347, 362, 438, 545, 563
NlaIV GGNNCC 2 cut(s) 39, 1080
NmuCI GTSAC 3 cut(s) 317, 627, 1268
NspI RCATGY 1 cut(s) 29
PagI TCATGA 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 683
PfeI GAWTC 1 cut(s) 669
PkrI GCNGC 4 cut(s) 235, 238, 666, 1399
PleI GAGTC 2 cut(s) 253, 754
PpsI GAGTC 2 cut(s) 253, 754
PshBI ATTAAT 1 cut(s) 1479
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 2 cut(s) 39, 1080
PspPI GGNCC 2 cut(s) 526, 791
PstI CTGCAG 1 cut(s) 1402
RsaI GTAC 7 cut(s) 39, 387, 461, 638, 735, 859, 993
RsaNI GTAC 7 cut(s) 38, 386, 460, 637, 734, 858, 992
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 6 cut(s) 506, 675, 696, 1073, 1133, 1479
SatI GCNGC 4 cut(s) 234, 237, 665, 1398
Sau3AI GATC 6 cut(s) 190, 196, 202, 208, 214, 1359
Sau96I GGNCC 2 cut(s) 526, 791
ScaI AGTACT 1 cut(s) 735
SchI GAGTC 2 cut(s) 254, 755
ScrFI CCNGG 1 cut(s) 594
SduI GDGCHC 1 cut(s) 1107
SexAI ACCWGGT 1 cut(s) 592
SfaNI GCATC 3 cut(s) 104, 271, 651
SfcI CTRYAG 2 cut(s) 265, 1398
SinI GGWCC 1 cut(s) 526
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 3 cut(s) 329, 869, 882
SmoI CTYRAG 3 cut(s) 329, 869, 882
SpeI ACTAGT 1 cut(s) 1231
Sse9I AATT 8 cut(s) 323, 406, 565, 786, 979, 1150, 1330, 1455
SsiI CCGC 3 cut(s) 236, 688, 1426
SspI AATATT 1 cut(s) 1483
SspMI CTAG 1 cut(s) 1232
StyD4I CCNGG 1 cut(s) 592
StyI CCWWGG 2 cut(s) 52, 1082
TaaI ACNGT 6 cut(s) 274, 317, 717, 727, 857, 1316
TasI AATT 8 cut(s) 323, 406, 565, 786, 979, 1150, 1330, 1455
TatI WGTACW 5 cut(s) 385, 459, 636, 733, 857
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 1 cut(s) 669
Tru1I TTAA 6 cut(s) 506, 675, 696, 1073, 1133, 1479
Tru9I TTAA 6 cut(s) 506, 675, 696, 1073, 1133, 1479
TscAI CASTG 6 cut(s) 279, 297, 322, 447, 732, 811
TseFI GTSAC 3 cut(s) 317, 627, 1268
TseI GCWGC 3 cut(s) 233, 664, 1397
Tsp45I GTSAC 3 cut(s) 317, 627, 1268
TspDTI ATGAA 4 cut(s) 128, 381, 894, 973
TspRI CASTG 6 cut(s) 279, 297, 322, 447, 732, 811
VpaK11BI GGWCC 1 cut(s) 526
VspI ATTAAT 1 cut(s) 1479
XagI CCTNNNNNAGG 1 cut(s) 51
XapI RAATTY 4 cut(s) 979, 1150, 1330, 1455
XceI RCATGY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 823
XmnI GAANNNNTTC 1 cut(s) 683
XspI CTAG 1 cut(s) 1232
ZrmI AGTACT 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.