Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005600.1

Orthogroup ID

OG0002191

Physical Location & Seq

Genomic Coordinates Forward (+)

43621 .. 45373

Gene Structure 1753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005600.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

atggaggccaatcacccaaagcctcatgcaatcatggtacctgttcctctccaaggccatgtcaaccccttcacccacttggccatgaaccttgcatcaaatggcatcaccatcacttttgtcaacactcgatacattcatcaccagataaccaaatccaaaaccaaaaacaacaccaaacaagagcaagatcaagatgacatctttgcggcggcgcgtgagtccggccttgacatacgctatagaacagtgagtgacgctttcccactgtccttcaatcggtttcagaacagtgaccaatttcttgagggtagtatccatgtcttccctgcccatgttgatgaacttgttggagatttagtacaatctgacccctcaatcaattgtttgattgctgacaccttctacacatggccggagatgatagccaacaagtacaaccttatcaatatctccttctggactgaaccagctttagtcttaaacatttactaccacttggacctcctcataaaacatggtcattttggttgtcatgataattgtgaggacaccatagattacatacctggtgtgcaggctattgaaccaaaggatttgatgtcacacctgtacattactgatacctcagctccgatgctgcgaatcattaagaaggcgttccgcgaagttaagagggcagattttatactgtgtaatacagtgcaagtacttgaagcagagtctctttcagccttgcaagacaagcaacctacatatgcaattggccccctcttccccagtgaacccaccaagaatgttgtggctactaatctgatgtccgagattgactgtacacaatggctcaaaaccaagcctcaaggttcagttttgtatgtttcatttggtagctattgtcaggttactaagaatgagtttgaggaaatagctcaggggcttttgcttagtaaagtgaatttcatttgggtactacgccctgacactataagctacgacgaagaaaggtatattgttccctttggattggaagaccagagcgatagagggttaatggtgccttggtgttctcaggttgaggtgctctcaaatccagcaataggagggttcttaactcattgcggatggaattccatactggaaagtatgtggtttggtgttccaatgctgtgttttcctattgaaactgaccaaatcactaataggaaactagtggttgatgattggaggattggtctcaatctttgtgacaggaagccaatcacaaggttggaggtagcacaaaaggtcaaccgtctgatgggtggaaatttgggtgatcgactattgcagaaggagatcaagaaggcaaagcagacattggaggaagctttggctgcagatgggtcatcacaacagagtttccaccgatttatcagtgacgtaaaggctaaaattcaaacacgcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

482

Amino Acids

54.71

Weight (kDa)

5.69

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36970
fragaria_vesca	FvH4_6g16230 FvH4_6g16230 FvH4_6g16250
malus_domestica	MD12G1114000.v1.1 MD12G1114100.v1.1 MD12G1114200.v1.1
prunus_persica	Prupe.6G233100_v2.0.a1 Prupe.6G233200_v2.0.a1 Prupe.6G233300_v2.0.a1 Prupe.6G233400_v2.0.a1 Prupe.6G233500_v2.0.a1 Prupe.6G233600_v2.0.a1 Prupe.6G233600_v2.0.a1
pyrus_communis	pycom12g11320 pycom12g11330 pycom12g11340
rosa_chinensis	RchiOBHm_Chr3g0470071 RchiOBHm_Chr3g0470101 RchiOBHm_Chr3g0470111
rosa_laevigata	RLG00000024296 RLG00000024298 RLG00000024299
rosa_multiflora	Rmu_sc0005600.1_g000011 Rmu_sc0005600.1_g000012 Rmu_sc0009114.1_g000016
rosa_roxburghii	Rroxscaffold_6G00411170 Rroxscaffold_6G00411180 Rroxscaffold_6G00411200
rosa_rugosa	Rorug03G0106700 Rorug03G0106700
rosa_samantha	Rh3AG155900 Rh3AG156200 Rh3BG180100 Rh3BG180200 Rh3CG170600 Rh3CG171000 Rh3DG195100
rosa_wichuraiana	Rw3G014680 Rw3G014690 Rw3G014700 Rw3G014760 Rw3G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	37
AccB1I	GGYRCC	2 cut(s)	37, 1054
AccII	CGCG	2 cut(s)	217, 666
AciI	CCGC	4 cut(s)	209, 212, 664, 1119
AcoI	YGGCCR	2 cut(s)	81, 413
AcsI	RAATTY	4 cut(s)	955, 1126, 1306, 1431
AfaI	GTAC	7 cut(s)	39, 363, 437, 614, 711, 835, 969
AfiI	CCNNNNNNNGG	4 cut(s)	53, 279, 1097, 1297
AgsI	TTSAA	5 cut(s)	277, 587, 716, 1181, 1436
AhlI	ACTAGT	1 cut(s)	1207
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	6 cut(s)	473, 632, 891, 929, 990, 1367
AluI	AGCT	6 cut(s)	473, 632, 891, 929, 990, 1367
Alw21I	GWGCWC	1 cut(s)	1083
Alw26I	GTCTC	2 cut(s)	729, 1238
AoxI	GGCC	6 cut(s)	6, 55, 81, 226, 413, 766
ApeKI	GCWGC	2 cut(s)	640, 1373
ApoI	RAATTY	4 cut(s)	955, 1126, 1306, 1431
Asp700I	GAANNNNTTC	1 cut(s)	659
Asp718I	GGTACC	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	2 cut(s)	502, 767
AsuHPI	GGTGA	5 cut(s)	5, 64, 100, 134, 1325
AvaII	GGWCC	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	37, 1054
BbsI	GAAGAC	2 cut(s)	316, 1035
Bbv12I	GWGCWC	1 cut(s)	1083
BbvCI	CCTCAGC	1 cut(s)	628
BbvI	GCAGC	2 cut(s)	627, 1360
BccI	CCATC	4 cut(s)	119, 1116, 1291, 1373
BciT130I	CCWGG	1 cut(s)	570
BciVI	GTATCC	1 cut(s)	326
BcoDI	GTCTC	2 cut(s)	729, 1238
BcuI	ACTAGT	1 cut(s)	1207
BfaI	CTAG	1 cut(s)	1208
BfmI	CTRYAG	2 cut(s)	241, 1374
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	4 cut(s)	210, 213, 641, 1374
BlsI	GCNGC	4 cut(s)	211, 214, 642, 1375
BmcAI	AGTACT	1 cut(s)	711
Bme1390I	CCNGG	1 cut(s)	570
Bme18I	GGWCC	1 cut(s)	502
BmgT120I	GGNCC	2 cut(s)	502, 767
BmiI	GGNNCC	3 cut(s)	39, 769, 1056
BmrFI	CCNGG	1 cut(s)	570
BmrI	ACTGGG	1 cut(s)	774
BmsI	GCATC	3 cut(s)	104, 114, 627
BmuI	ACTGGG	1 cut(s)	774
BpiI	GAAGAC	2 cut(s)	316, 1035
BplI	GAGNNNNNCTC	2 cut(s)	1067, 1099
Bpu10I	CCTNAGC	2 cut(s)	628, 930
BpuEI	CTTGAG	2 cut(s)	326, 843
BsaI	GGTCTC	1 cut(s)	1238
BsaJI	CCNNGG	2 cut(s)	52, 1058
BsaXI	ACNNNNNCTCC	6 cut(s)	345, 375, 616, 646, 1216, 1246
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 279, 1097, 1297
Bse1I	ACTGG	2 cut(s)	780, 1140
Bse3DI	GCAATG	1 cut(s)	1114
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	52, 1058
BseGI	GGATG	1 cut(s)	1127
BseLI	CCNNNNNNNGG	4 cut(s)	53, 279, 1097, 1297
BseMI	GCAATG	1 cut(s)	1114
BseMII	CTCAG	3 cut(s)	642, 944, 1082
BseNI	ACTGG	2 cut(s)	780, 1140
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	2 cut(s)	627, 1360
BsgI	GTGCAG	1 cut(s)	596
Bsh1236I	CGCG	2 cut(s)	217, 666
BshFI	GGCC	6 cut(s)	8, 57, 83, 228, 415, 768
BshNI	GGYRCC	2 cut(s)	37, 1054
BsiHKAI	GWGCWC	1 cut(s)	1083
BsiSI	CCGG	2 cut(s)	225, 416
BslI	CCNNNNNNNGG	4 cut(s)	53, 279, 1097, 1297
BsmAI	GTCTC	2 cut(s)	729, 1238
BsnI	GGCC	6 cut(s)	8, 57, 83, 228, 415, 768
Bso31I	GGTCTC	1 cut(s)	1238
Bsp1286I	GDGCHC	1 cut(s)	1083
Bsp1407I	TGTACA	2 cut(s)	612, 833
Bsp143I	GATC	3 cut(s)	190, 1315, 1335
BspACI	CCGC	4 cut(s)	209, 212, 664, 1119
BspANI	GGCC	6 cut(s)	8, 57, 83, 228, 415, 768
BspCNI	CTCAG	3 cut(s)	641, 943, 1081
BspFNI	CGCG	2 cut(s)	217, 666
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	3 cut(s)	39, 769, 1056
BspMAI	CTGCAG	1 cut(s)	1378
BspT107I	GGYRCC	2 cut(s)	37, 1054
BspTNI	GGTCTC	1 cut(s)	1238
BsrDI	GCAATG	1 cut(s)	1114
BsrGI	TGTACA	2 cut(s)	612, 833
BsrI	ACTGG	2 cut(s)	780, 1140
BssECI	CCNNGG	2 cut(s)	52, 1058
BssMI	GATC	3 cut(s)	190, 1315, 1335
BssT1I	CCWWGG	2 cut(s)	52, 1058
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	7 cut(s)	250, 270, 293, 693, 703, 833, 1292
Bst6I	CTCTTC	1 cut(s)	779
BstAUI	TGTACA	2 cut(s)	612, 833
BstC8I	GCNNGC	1 cut(s)	579
BstDEI	CTNAG	5 cut(s)	628, 906, 930, 944, 1068
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	1127
BstFNI	CGCG	2 cut(s)	217, 666
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	3 cut(s)	193, 1318, 1338
BstMAI	GTCTC	2 cut(s)	729, 1238
BstMBI	GATC	3 cut(s)	190, 1315, 1335
BstMWI	GCNNNNNNNGC	2 cut(s)	745, 1373
BstNI	CCWGG	1 cut(s)	570
BstSCI	CCNGG	1 cut(s)	568
BstSFI	CTRYAG	2 cut(s)	241, 1374
BstUI	CGCG	2 cut(s)	217, 666
BstV1I	GCAGC	2 cut(s)	627, 1360
BstV2I	GAAGAC	2 cut(s)	316, 1035
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	6 cut(s)	8, 57, 83, 228, 415, 768
BtsCI	GGATG	1 cut(s)	1127
BtsIMutI	CAGTG	6 cut(s)	255, 266, 298, 708, 787, 1420
Cac8I	GCNNGC	1 cut(s)	579
CciI	TCATGA	1 cut(s)	535
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	502, 767
CseI	GACGC	1 cut(s)	266
CsiI	ACCWGGT	1 cut(s)	568
Csp6I	GTAC	7 cut(s)	38, 362, 436, 613, 710, 834, 968
CviAII	CATG	9 cut(s)	26, 34, 59, 85, 320, 335, 411, 518, 536
CviQI	GTAC	7 cut(s)	38, 362, 436, 613, 710, 834, 968
DdeI	CTNAG	5 cut(s)	628, 906, 930, 944, 1068
DpnI	GATC	3 cut(s)	192, 1317, 1337
DpnII	GATC	3 cut(s)	190, 1315, 1335
EaeI	YGGCCR	2 cut(s)	81, 413
Eam1104I	CTCTTC	1 cut(s)	779
EarI	CTCTTC	1 cut(s)	779
Eco130I	CCWWGG	2 cut(s)	52, 1058
Eco31I	GGTCTC	1 cut(s)	1238
Eco47I	GGWCC	1 cut(s)	502
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	1126
EcoRII	CCWGG	1 cut(s)	568
EcoT14I	CCWWGG	2 cut(s)	52, 1058
ErhI	CCWWGG	2 cut(s)	52, 1058
FaeI	CATG	9 cut(s)	29, 37, 62, 88, 323, 338, 414, 521, 539
FatI	CATG	9 cut(s)	25, 33, 58, 84, 319, 334, 410, 517, 535
FauNDI	CATATG	1 cut(s)	757
Fnu4HI	GCNGC	4 cut(s)	210, 213, 641, 1374
FokI	GGATG	1 cut(s)	1134
Fsp4HI	GCNGC	4 cut(s)	210, 213, 641, 1374
FspBI	CTAG	1 cut(s)	1208
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	4 cut(s)	210, 213, 641, 1374
HaeIII	GGCC	6 cut(s)	8, 57, 83, 228, 415, 768
HapII	CCGG	2 cut(s)	225, 416
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	9 cut(s)	29, 37, 62, 88, 323, 338, 414, 521, 539
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	3 cut(s)	64, 124, 1288
HindII	GTYRAC	3 cut(s)	64, 124, 1288
HindIII	AAGCTT	1 cut(s)	1365
HinfI	GANTC	3 cut(s)	221, 645, 722
HpaII	CCGG	2 cut(s)	225, 416
HphI	GGTGA	5 cut(s)	5, 64, 100, 134, 1325
Hpy166II	GTNNAC	5 cut(s)	64, 124, 785, 836, 1288
Hpy188I	TCNGA	6 cut(s)	288, 370, 636, 816, 823, 1296
Hpy188III	TCNNGA	5 cut(s)	194, 305, 460, 536, 1339
Hpy8I	GTNNAC	5 cut(s)	64, 124, 785, 836, 1288
Hpy99I	CGWCG	1 cut(s)	998
HpyAV	CCTTC	7 cut(s)	79, 283, 412, 466, 649, 1324, 1336
HpyCH4III	ACNGT	7 cut(s)	250, 270, 293, 693, 703, 833, 1292
HpyCH4IV	ACGT	1 cut(s)	1419
HpyCH4V	TGCA	8 cut(s)	29, 95, 577, 706, 739, 761, 1327, 1376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	745, 1373
HpyF3I	CTNAG	5 cut(s)	628, 906, 930, 944, 1068
HpySE526I	ACGT	1 cut(s)	1419
Hsp92II	CATG	9 cut(s)	29, 37, 62, 88, 323, 338, 414, 521, 539
HspAI	GCGC	1 cut(s)	215
KpnI	GGTACC	1 cut(s)	41
Kzo9I	GATC	3 cut(s)	190, 1315, 1335
LmnI	GCTCC	1 cut(s)	637
Lsp1109I	GCAGC	2 cut(s)	627, 1360
LweI	GCATC	3 cut(s)	104, 114, 627
MabI	ACCWGGT	1 cut(s)	568
MaeI	CTAG	1 cut(s)	1208
MaeII	ACGT	1 cut(s)	1419
MaeIII	GTNAC	6 cut(s)	254, 293, 603, 901, 1244, 1415
MalI	GATC	3 cut(s)	192, 1317, 1337
MboI	GATC	3 cut(s)	190, 1315, 1335
MboII	GAAGA	4 cut(s)	316, 766, 1010, 1040
MfeI	CAATTG	2 cut(s)	382, 762
MhlI	GDGCHC	1 cut(s)	1083
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	8 cut(s)	299, 382, 541, 762, 955, 1126, 1306, 1431
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	230, 731
MmeI	TCCRAC	2 cut(s)	331, 1248
Mox20I	TGGCCA	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	659
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	5 cut(s)	482, 651, 672, 1049, 1109
MslI	CAYNNNNRTG	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	2 cut(s)	225, 416
MspR9I	CCNGG	1 cut(s)	570
MunI	CAATTG	2 cut(s)	382, 762
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	2 cut(s)	217, 666
MwoI	GCNNNNNNNGC	2 cut(s)	745, 1373
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	3 cut(s)	190, 1315, 1335
NlaIII	CATG	9 cut(s)	29, 37, 62, 88, 323, 338, 414, 521, 539
NlaIV	GGNNCC	3 cut(s)	39, 769, 1056
NmuCI	GTSAC	5 cut(s)	254, 293, 603, 1244, 1415
PagI	TCATGA	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	1 cut(s)	645
PkrI	GCNGC	4 cut(s)	211, 214, 642, 1375
PleI	GAGTC	2 cut(s)	229, 730
PpsI	GAGTC	2 cut(s)	229, 730
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	3 cut(s)	39, 769, 1056
PspPI	GGNCC	2 cut(s)	502, 767
PstI	CTGCAG	1 cut(s)	1378
RsaI	GTAC	7 cut(s)	39, 363, 437, 614, 711, 835, 969
RsaNI	GTAC	7 cut(s)	38, 362, 436, 613, 710, 834, 968
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	5 cut(s)	482, 651, 672, 1049, 1109
SatI	GCNGC	4 cut(s)	210, 213, 641, 1374
Sau3AI	GATC	3 cut(s)	190, 1315, 1335
Sau96I	GGNCC	2 cut(s)	502, 767
ScaI	AGTACT	1 cut(s)	711
SchI	GAGTC	2 cut(s)	230, 731
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	1 cut(s)	1083
SexAI	ACCWGGT	1 cut(s)	568
SfaNI	GCATC	3 cut(s)	104, 114, 627
SfcI	CTRYAG	2 cut(s)	241, 1374
SinI	GGWCC	1 cut(s)	502
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	2 cut(s)	305, 858
SmoI	CTYRAG	2 cut(s)	305, 858
SpeI	ACTAGT	1 cut(s)	1207
Sse9I	AATT	8 cut(s)	299, 382, 541, 762, 955, 1126, 1306, 1431
SsiI	CCGC	4 cut(s)	209, 212, 664, 1119
SspMI	CTAG	1 cut(s)	1208
StyD4I	CCNGG	1 cut(s)	568
StyI	CCWWGG	2 cut(s)	52, 1058
TaaI	ACNGT	7 cut(s)	250, 270, 293, 693, 703, 833, 1292
TaiI	ACGT	1 cut(s)	1422
TaqI	TCGA	2 cut(s)	130, 1318
TasI	AATT	8 cut(s)	299, 382, 541, 762, 955, 1126, 1306, 1431
TatI	WGTACW	5 cut(s)	361, 435, 612, 709, 833
TauI	GCSGC	2 cut(s)	212, 215
TfiI	GAWTC	1 cut(s)	645
Tru1I	TTAA	5 cut(s)	482, 651, 672, 1049, 1109
Tru9I	TTAA	5 cut(s)	482, 651, 672, 1049, 1109
TscAI	CASTG	6 cut(s)	255, 273, 298, 708, 787, 1420
TseFI	GTSAC	5 cut(s)	254, 293, 603, 1244, 1415
TseI	GCWGC	2 cut(s)	640, 1373
Tsp45I	GTSAC	5 cut(s)	254, 293, 603, 1244, 1415
TspDTI	ATGAA	5 cut(s)	101, 128, 357, 870, 949
TspRI	CASTG	6 cut(s)	255, 273, 298, 708, 787, 1420
VpaK11BI	GGWCC	1 cut(s)	502
XagI	CCTNNNNNAGG	1 cut(s)	51
XapI	RAATTY	4 cut(s)	955, 1126, 1306, 1431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	799
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	1 cut(s)	1208
ZrmI	AGTACT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.