FvH4_6g19053

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003953
Physical Location & Seq
Forward (+)
12623865 .. 12625282
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19053.t1

Sequence Viewer

Length: 846 bp
ATGGATTGGATTCGTTATGCAGTAAGCTGCAAAGTTGATTCACTGACTCTAGTTTATGTTGATCAGATCTATGATCAGAAAAACCAAACAGAAATTCCTGCTTGCGTGTTTGCTTGCGGGTCTTTGAGGTCTTTAATTGTGAACATGATGTGGGTAATTCTTAAAGCTTCCTTGTTTTCTACATCTTTTACCTCTAATCTCGTATGCTTGAGGTTAACCAACGTTACTGTAGAAGATGATGAGGGTTTTTGCAAATGGGTCTCATACTCGTGCATATCTCTGAAGATATTGGACCTTGCTAGGGTTAGAGGGTTAAAATCTATCACCATTGAAAGCCCGTCTTTGGAATCATTTAGGATTTACTCTACTCATTCTTGTAAGCTTATCAATGTTGGAATCTCTGGTGATAAGCTTGAAAAGATAGATATGCTGTGGTACCGTAGTATGCCTAAAGTGAATTGCTTGAATATTTTTGCTCCGAATCTTAAGAAACTGAAATGGGAGGGGAGTATGATGAACCATCAAAATCTGGGGGATCTCAGTTGTGTAAATGAAGTTGAGATTTCTTTAACCTCTAATGGAGTAGAAGACTTGGACAGCATTTGTCATCAGTTCTTGTGGAGTATCCGCAGGGTTAAAGTTCTTATTCTGGATATACGGACTTTAGAGGGATCTGGATTTGATAGGACATACTGGGAACTCCAAGACCTTGATTTTATTTCTGAGCTAGAGGCTAGTCAGTCCAGTCTGATAAAGAAGTTGAGGACAGCCAGAGGTACTACCAATGCCATGCATAACAGTGTTTCAGAAATTGGGATAAACACAGGCAACACTGGTTTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

282

Amino Acids

31.8

Weight (kDa)

6.12

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 2 - 189 3.1e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 435
AciI CCGC 2 cut(s) 117, 628
AclI AACGTT 1 cut(s) 222
AclWI GGATC 2 cut(s) 543, 679
AcsI RAATTY 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 2 cut(s) 437, 778
AfiI CCNNNNNNNGG 2 cut(s) 301, 343
AflII CTTAAG 1 cut(s) 485
AgsI TTSAA 3 cut(s) 332, 416, 466
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 5 cut(s) 27, 167, 382, 412, 727
AluI AGCT 5 cut(s) 27, 167, 382, 412, 727
Alw26I GTCTC 1 cut(s) 265
AlwI GGATC 2 cut(s) 543, 679
ApeKI GCWGC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 93
Asp718I GGTACC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 2 cut(s) 316, 416
AvaII GGWCC 1 cut(s) 292
BaeI ACNNNNGTAYC 2 cut(s) 427, 460
BanI GGYRCC 1 cut(s) 435
BauI CACGAG 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 594
BbvI GCAGC 1 cut(s) 14
BccI CCATC 1 cut(s) 528
BciVI GTATCC 1 cut(s) 635
BclI TGATCA 2 cut(s) 61, 73
BcoDI GTCTC 1 cut(s) 265
BfaI CTAG 4 cut(s) 50, 300, 728, 735
BfmI CTRYAG 1 cut(s) 228
BfrI CTTAAG 1 cut(s) 485
BfuI GTATCC 1 cut(s) 635
BglII AGATCT 1 cut(s) 66
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 437
BmrI ACTGGG 1 cut(s) 703
BmuI ACTGGG 1 cut(s) 703
BpiI GAAGAC 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 265
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 343
Bse1I ACTGG 3 cut(s) 698, 744, 838
BseLI CCNNNNNNNGG 2 cut(s) 301, 343
BseMII CTCAG 2 cut(s) 553, 714
BseNI ACTGG 3 cut(s) 698, 744, 838
BseXI GCAGC 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 435
BslI CCNNNNNNNGG 2 cut(s) 301, 343
BsmAI GTCTC 1 cut(s) 265
Bso31I GGTCTC 1 cut(s) 265
Bsp143I GATC 5 cut(s) 61, 66, 73, 535, 671
BspACI CCGC 2 cut(s) 117, 628
BspCNI CTCAG 2 cut(s) 552, 715
BspLI GGNNCC 1 cut(s) 437
BspPI GGATC 2 cut(s) 543, 679
BspT107I GGYRCC 1 cut(s) 435
BspTI CTTAAG 1 cut(s) 485
BspTNI GGTCTC 1 cut(s) 265
BsrI ACTGG 3 cut(s) 698, 744, 838
BssMI GATC 5 cut(s) 61, 66, 73, 535, 671
BssSI CACGAG 1 cut(s) 268
Bst2BI CACGAG 1 cut(s) 268
Bst4CI ACNGT 3 cut(s) 229, 440, 800
BstAFI CTTAAG 1 cut(s) 485
BstC8I GCNNGC 2 cut(s) 103, 115
BstDEI CTNAG 2 cut(s) 539, 723
BstKTI GATC 5 cut(s) 64, 69, 76, 538, 674
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 5 cut(s) 61, 66, 73, 535, 671
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 14
BstV2I GAAGAC 1 cut(s) 594
BstX2I RGATCY 3 cut(s) 66, 535, 671
BstYI RGATCY 3 cut(s) 66, 535, 671
BsuI GTATCC 1 cut(s) 635
BtsIMutI CAGTG 3 cut(s) 41, 805, 831
Cac8I GCNNGC 2 cut(s) 103, 115
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 2 cut(s) 436, 777
CviAII CATG 2 cut(s) 145, 790
CviJI RGCY 8 cut(s) 27, 167, 336, 382, 412, 727, 734, 770
CviKI_1 RGCY 8 cut(s) 27, 167, 336, 382, 412, 727, 734, 770
CviQI GTAC 2 cut(s) 436, 777
DdeI CTNAG 2 cut(s) 539, 723
DpnI GATC 5 cut(s) 63, 68, 75, 537, 673
DpnII GATC 5 cut(s) 61, 66, 73, 535, 671
Eco31I GGTCTC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 302
EcoT22I ATGCAT 1 cut(s) 795
FaeI CATG 2 cut(s) 148, 793
FalI AAGNNNNNCTT 2 cut(s) 325, 357
FatI CATG 2 cut(s) 144, 789
FauI CCCGC 1 cut(s) 110
FbaI TGATCA 2 cut(s) 61, 73
Fnu4HI GCNGC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 4 cut(s) 50, 300, 728, 735
GluI GCNGC 1 cut(s) 28
Hin1II CATG 2 cut(s) 148, 793
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HindIII AAGCTT 3 cut(s) 165, 380, 410
HinfI GANTC 6 cut(s) 10, 38, 46, 347, 396, 481
HpaI GTTAAC 1 cut(s) 216
HphI GGTGA 2 cut(s) 316, 416
Hpy166II GTNNAC 2 cut(s) 142, 216
Hpy188I TCNGA 7 cut(s) 66, 78, 282, 480, 724, 750, 808
Hpy188III TCNNGA 2 cut(s) 650, 675
Hpy8I GTNNAC 2 cut(s) 142, 216
HpyCH4III ACNGT 3 cut(s) 229, 440, 800
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 5 cut(s) 20, 30, 252, 273, 793
HpyF3I CTNAG 2 cut(s) 539, 723
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 2 cut(s) 148, 793
KpnI GGTACC 1 cut(s) 439
Ksp22I TGATCA 2 cut(s) 61, 73
KspAI GTTAAC 1 cut(s) 216
Kzo9I GATC 5 cut(s) 61, 66, 73, 535, 671
LmnI GCTCC 1 cut(s) 481
Lsp1109I GCAGC 1 cut(s) 14
MaeI CTAG 4 cut(s) 50, 300, 728, 735
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 223
MalI GATC 5 cut(s) 63, 68, 75, 537, 673
MboI GATC 5 cut(s) 61, 66, 73, 535, 671
MboII GAAGA 3 cut(s) 245, 295, 599
MflI RGATCY 3 cut(s) 66, 535, 671
MluCI AATT 5 cut(s) 93, 135, 156, 457, 810
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 373
Mph1103I ATGCAT 1 cut(s) 795
MseI TTAA 8 cut(s) 134, 162, 215, 314, 486, 569, 636, 844
MslI CAYNNNNRTG 2 cut(s) 268, 798
MspCI CTTAAG 1 cut(s) 485
NdeII GATC 5 cut(s) 61, 66, 73, 535, 671
NlaIII CATG 2 cut(s) 148, 793
NlaIV GGNNCC 1 cut(s) 437
NsiI ATGCAT 1 cut(s) 795
PfeI GAWTC 5 cut(s) 10, 38, 347, 396, 481
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp1406I AACGTT 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 437
PspPI GGNCC 1 cut(s) 292
PsuI RGATCY 3 cut(s) 66, 535, 671
RsaI GTAC 2 cut(s) 437, 778
RsaNI GTAC 2 cut(s) 436, 777
RseI CAYNNNNRTG 2 cut(s) 268, 798
SaqAI TTAA 8 cut(s) 134, 162, 215, 314, 486, 569, 636, 844
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 5 cut(s) 61, 66, 73, 535, 671
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 2 cut(s) 268, 798
SmlI CTYRAG 2 cut(s) 208, 485
SmoI CTYRAG 2 cut(s) 208, 485
Sse9I AATT 5 cut(s) 93, 135, 156, 457, 810
SsiI CCGC 2 cut(s) 117, 628
SspI AATATT 1 cut(s) 469
SspMI CTAG 4 cut(s) 50, 300, 728, 735
TaaI ACNGT 3 cut(s) 229, 440, 800
TaiI ACGT 1 cut(s) 225
TasI AATT 5 cut(s) 93, 135, 156, 457, 810
TfiI GAWTC 5 cut(s) 10, 38, 347, 396, 481
Tru1I TTAA 8 cut(s) 134, 162, 215, 314, 486, 569, 636, 844
Tru9I TTAA 8 cut(s) 134, 162, 215, 314, 486, 569, 636, 844
TscAI CASTG 3 cut(s) 48, 805, 838
TseI GCWGC 1 cut(s) 27
TspDTI ATGAA 2 cut(s) 530, 567
TspGWI ACGGA 1 cut(s) 673
TspRI CASTG 3 cut(s) 48, 805, 838
Vha464I CTTAAG 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 1 cut(s) 93
XspI CTAG 4 cut(s) 50, 300, 728, 735
Zsp2I ATGCAT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.