FvH4_6g22710

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
16323995 .. 16326281
2287 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22710.t2

Sequence Viewer

Length: 1587 bp
ATGGCTGAAATTCAGGTTGCTATAGACAGATTCAGTGAACTCCCACTGGAAATCGCCCATCACATTTTGTCCTTCCTTCCAATAGCTGATGTTACTCGGGTGAGCAGCTTGTCCAAAAGATGTAGTCGCCTTCGTCTGTCAAACCCCACAGTGAACTTCCATTCGTTTCCCTCTGAGTCCACCCTCACATTTCAGAAGAGGTTAAAGTTGTGGAACTCCTTGGATCGCTTCCTGGTACAACGACGAAACAACAAGGTAAAATCCTTTTTCATTTATTGGAATCCTGAATACCATTTTGCTGAAACCGAAATGGAATGTCACTGTGTTCTTGAGAAACGACGAATCCTGGGTTGGATTCAAAACGCGTTACGTTGTGATGTTGAAAAGCTTACTGTTTACTTTCGAACTCAGATGCCAACTGTAGGCAATCTACATGGTAATAATACAGATTTCCCTTCTTCTATGTTTCTTTGTGAGTCTTTGAGGTACTTAACCCTACACATGAAGTCTGCAACTTTTGAGGCTCCCTCCTTTTCTACTTCTCCTACCTCTAATCTGGTGTACTTGAATTTGGGACATGTAACTATAAAAGATGGTAAAAGGTTCTGCAAATGGGTCTCCTACTGTTGTAGGTTTATTAAGGATTTGAGGCTGGAACAGGTTTATGGGTTGGAAGACATAACCATTGAAAGTTCCTCTTTGGAGTCATTCTCGGTCCGGTTTCCCTGTTATTTTGACATTGATCGCCTTGCAATATCTGGTGATAGAATTAAAGATATAGATATAGATTGGGACTATGATCCAACCCGGAACAACAATACTAGTGTGTTGTATATTTCGGCTCCAAATCTGAAGTATCTGACATGGTATGGGAATATATTGAATCATCAGCATCTTGGGGAAATGCATCGTTTGGAACAAGTTGAGATTTCTCTTTCTTCTTATCATGTAAATGACTTGGATCGCGTTTGTGAGCAGCTTTTGCACAGTATAAGCAGTGTGAAATATCTTCGTCTAGATCAAGTGACTGCTAAGATAGTGTTCAGGGAAGGTTTCACTCCTGCCCCATTGGGCAATGTTTGCAACTTGCGTATGTGGATTTGGTGCAATATTGATGATAAACTTGTGGCAGCCATGACCTCTCTTTTTAGGGCTGTGCCTAATTTGACTACTTTGTCTGTATCATCATATCCTGAGTATCCTTTTCTTGGTGGTGGTACTAATTTATCTGGATTTGATAAGGGATACTGGGAACTCCAGCGCTTTGATTTTGTTCGTAATTTAGAGCAGGTAACCATGGAGCTTACCTCTGGGTCCAATGGATATGAATTAGCTAAGTATCTGCTTGAGCATGCTTGTAATTTGAAGATGATGTTGGTTATTACTACACCCGATCAGTCAAGTTTAGTACCGGAAATAAGGAGAAGCAACCGTACTTCCAATGCTACAGTGGACATCCTAGAAAAACGGAGACGCAACCGTACTTCCAATACTACACCCGATCATTCAAGTGTAGGATATGATTTAGTCAAGATTGCCTCATCATCGTGTTTAATGACCAAATCCCATGTCGAAATGAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

529

Amino Acids

60.97

Weight (kDa)

7.88

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 44 4.6e-06 F-box domain
LRR_At5g56370 PF24758 117 - 313 4.5e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1174
Acc36I ACCTGC 1 cut(s) 1279
AccII CGCG 2 cut(s) 365, 966
AclWI GGATC 3 cut(s) 231, 794, 969
AcsI RAATTY 2 cut(s) 9, 568
AcuI CTGAAG 1 cut(s) 872
AfaI GTAC 7 cut(s) 237, 488, 563, 1219, 1410, 1435, 1483
AfeI AGCGCT 1 cut(s) 1262
AfiI CCNNNNNNNGG 2 cut(s) 422, 1208
AflIII ACRYGT 2 cut(s) 363, 577
AgsI TTSAA 7 cut(s) 359, 383, 568, 689, 883, 1366, 1509
AhlI ACTAGT 1 cut(s) 821
AjnI CCWGG 2 cut(s) 231, 345
AjuI GAANNNNNNNTTGG 4 cut(s) 334, 366, 1358, 1390
AluBI AGCT 6 cut(s) 86, 108, 388, 979, 1303, 1334
AluI AGCT 6 cut(s) 86, 108, 388, 979, 1303, 1334
Alw26I GTCTC 2 cut(s) 622, 1465
AlwI GGATC 3 cut(s) 231, 794, 969
Ama87I CYCGRG 1 cut(s) 96
Aor51HI AGCGCT 1 cut(s) 1262
ApeKI GCWGC 3 cut(s) 105, 976, 1130
ApoI RAATTY 2 cut(s) 9, 568
ArsI GACNNNNNNTTYG 2 cut(s) 1554, 1586
AspLEI GCGC 1 cut(s) 1263
AspS9I GGNCC 2 cut(s) 715, 1314
AsuC2I CCSGG 1 cut(s) 808
AsuHPI GGTGA 2 cut(s) 112, 773
AsuII TTCGAA 1 cut(s) 403
AvaI CYCGRG 1 cut(s) 96
AvaII GGWCC 2 cut(s) 715, 1314
BarI GAAGNNNNNNTAC 2 cut(s) 1417, 1449
BbsI GAAGAC 1 cut(s) 681
BbvI GCAGC 3 cut(s) 117, 988, 1142
BccI CCATC 2 cut(s) 66, 587
BciT130I CCWGG 2 cut(s) 233, 347
BciVI GTATCC 2 cut(s) 1209, 1238
BcnI CCSGG 1 cut(s) 808
BcoDI GTCTC 2 cut(s) 622, 1465
BcuI ACTAGT 1 cut(s) 821
BfaI CTAG 3 cut(s) 822, 1016, 1460
BfmI CTRYAG 3 cut(s) 21, 420, 1446
BfoI RGCGCY 1 cut(s) 1264
BfuAI ACCTGC 1 cut(s) 1279
BfuI GTATCC 2 cut(s) 1209, 1238
BisI GCNGC 3 cut(s) 106, 977, 1131
BlsI GCNGC 3 cut(s) 107, 978, 1132
Bme1390I CCNGG 3 cut(s) 233, 347, 808
Bme18I GGWCC 2 cut(s) 715, 1314
BmeT110I CYCGRG 1 cut(s) 96
BmgT120I GGNCC 2 cut(s) 715, 1314
BmiI GGNNCC 3 cut(s) 525, 843, 1315
BmrFI CCNGG 3 cut(s) 233, 347, 808
BmrI ACTGGG 1 cut(s) 1258
BmsI GCATC 3 cut(s) 402, 901, 916
BmuI ACTGGG 1 cut(s) 1258
BpiI GAAGAC 1 cut(s) 681
BplI GAGNNNNNCTC 6 cut(s) 512, 544, 695, 727, 1292, 1324
BpmI CTGGAG 1 cut(s) 1241
Bpu14I TTCGAA 1 cut(s) 403
BpuEI CTTGAG 2 cut(s) 350, 1367
BpuMI CCSGG 1 cut(s) 808
BsaI GGTCTC 1 cut(s) 622
BsaJI CCNNGG 3 cut(s) 219, 346, 1296
BsaWI WCCGGW 2 cut(s) 717, 1411
Bsc4I CCNNNNNNNGG 2 cut(s) 422, 1208
Bse1I ACTGG 2 cut(s) 51, 1253
Bse3DI GCAATG 1 cut(s) 1081
BseBI CCWGG 2 cut(s) 233, 347
BseDI CCNNGG 3 cut(s) 219, 346, 1296
BseGI GGATG 1 cut(s) 1455
BseLI CCNNNNNNNGG 2 cut(s) 422, 1208
BseMI GCAATG 1 cut(s) 1081
BseMII CTCAG 3 cut(s) 165, 422, 1185
BseNI ACTGG 2 cut(s) 51, 1253
BseXI GCAGC 3 cut(s) 117, 988, 1142
Bsh1236I CGCG 2 cut(s) 365, 966
BsiHKCI CYCGRG 1 cut(s) 96
BsiSI CCGG 3 cut(s) 718, 808, 1412
BslFI GGGAC 2 cut(s) 588, 806
BslI CCNNNNNNNGG 2 cut(s) 422, 1208
BsmAI GTCTC 2 cut(s) 622, 1465
BsmBI CGTCTC 1 cut(s) 1465
BsmFI GGGAC 2 cut(s) 588, 806
Bso31I GGTCTC 1 cut(s) 622
BsoBI CYCGRG 1 cut(s) 96
Bsp119I TTCGAA 1 cut(s) 403
Bsp143I GATC 7 cut(s) 223, 742, 799, 961, 1018, 1393, 1501
Bsp19I CCATGG 1 cut(s) 1296
BspCNI CTCAG 3 cut(s) 166, 421, 1186
BspFNI CGCG 2 cut(s) 365, 966
BspLI GGNNCC 3 cut(s) 525, 843, 1315
BspMI ACCTGC 1 cut(s) 1279
BspPI GGATC 3 cut(s) 231, 794, 969
BspT104I TTCGAA 1 cut(s) 403
BspTNI GGTCTC 1 cut(s) 622
BsrDI GCAATG 1 cut(s) 1081
BsrI ACTGG 2 cut(s) 51, 1253
BssECI CCNNGG 3 cut(s) 219, 346, 1296
BssMI GATC 7 cut(s) 223, 742, 799, 961, 1018, 1393, 1501
BssT1I CCWWGG 2 cut(s) 219, 1296
Bst2UI CCWGG 2 cut(s) 233, 347
Bst4CI ACNGT 9 cut(s) 151, 323, 394, 421, 626, 989, 1433, 1450, 1481
Bst6I CTCTTC 1 cut(s) 191
BstAPI GCANNNNNTGC 2 cut(s) 982, 1080
BstBI TTCGAA 1 cut(s) 403
BstC8I GCNNGC 1 cut(s) 1353
BstDEI CTNAG 5 cut(s) 174, 408, 1032, 1194, 1335
BstDSI CCRYGG 1 cut(s) 1296
BstEII GGTNACC 1 cut(s) 1291
BstF5I GGATG 1 cut(s) 1455
BstFNI CGCG 2 cut(s) 365, 966
BstH2I RGCGCY 1 cut(s) 1264
BstHHI GCGC 1 cut(s) 1263
BstKTI GATC 7 cut(s) 226, 745, 802, 964, 1021, 1396, 1504
BstMAI GTCTC 2 cut(s) 622, 1465
BstMBI GATC 7 cut(s) 223, 742, 799, 961, 1018, 1393, 1501
BstMWI GCNNNNNNNGC 2 cut(s) 982, 1080
BstNI CCWGG 2 cut(s) 233, 347
BstNSI RCATGY 2 cut(s) 581, 1355
BstPI GGTNACC 1 cut(s) 1291
BstSCI CCNGG 3 cut(s) 231, 345, 806
BstSFI CTRYAG 3 cut(s) 21, 420, 1446
BstUI CGCG 2 cut(s) 365, 966
BstV1I GCAGC 3 cut(s) 117, 988, 1142
BstV2I GAAGAC 1 cut(s) 681
BsuI GTATCC 2 cut(s) 1209, 1238
BtgI CCRYGG 1 cut(s) 1296
BtsCI GGATG 1 cut(s) 1455
BtsI GCAGTG 1 cut(s) 1003
BtsIMutI CAGTG 6 cut(s) 40, 44, 156, 319, 1003, 1455
BveI ACCTGC 1 cut(s) 1279
Cac8I GCNNGC 1 cut(s) 1353
CfoI GCGC 1 cut(s) 1263
Cfr13I GGNCC 2 cut(s) 715, 1314
CpoI CGGWCCG 1 cut(s) 715
CseI GACGC 1 cut(s) 1482
Csp6I GTAC 7 cut(s) 236, 487, 562, 1218, 1409, 1434, 1482
CspI CGGWCCG 1 cut(s) 715
CviAII CATG 9 cut(s) 434, 502, 578, 864, 947, 1135, 1297, 1352, 1568
CviQI GTAC 7 cut(s) 236, 487, 562, 1218, 1409, 1434, 1482
DdeI CTNAG 5 cut(s) 174, 408, 1032, 1194, 1335
DpnI GATC 7 cut(s) 225, 744, 801, 963, 1020, 1395, 1503
DpnII GATC 7 cut(s) 223, 742, 799, 961, 1018, 1393, 1501
DrdI GACNNNNNNGTC 1 cut(s) 1174
DseDI GACNNNNNNGTC 1 cut(s) 1174
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco130I CCWWGG 2 cut(s) 219, 1296
Eco31I GGTCTC 1 cut(s) 622
Eco47I GGWCC 2 cut(s) 715, 1314
Eco47III AGCGCT 1 cut(s) 1262
Eco57I CTGAAG 1 cut(s) 872
Eco88I CYCGRG 1 cut(s) 96
Eco91I GGTNACC 1 cut(s) 1291
EcoO65I GGTNACC 1 cut(s) 1291
EcoRII CCWGG 2 cut(s) 231, 345
EcoT14I CCWWGG 2 cut(s) 219, 1296
EcoT22I ATGCAT 1 cut(s) 909
ErhI CCWWGG 2 cut(s) 219, 1296
Esp3I CGTCTC 1 cut(s) 1465
FaeI CATG 9 cut(s) 437, 505, 581, 867, 950, 1138, 1300, 1355, 1571
FalI AAGNNNNNCTT 2 cut(s) 682, 714
FaqI GGGAC 2 cut(s) 588, 806
FatI CATG 9 cut(s) 433, 501, 577, 863, 946, 1134, 1296, 1351, 1567
Fnu4HI GCNGC 3 cut(s) 106, 977, 1131
FokI GGATG 1 cut(s) 1442
Fsp4HI GCNGC 3 cut(s) 106, 977, 1131
FspBI CTAG 3 cut(s) 822, 1016, 1460
GlaI GCGC 1 cut(s) 1262
GluI GCNGC 3 cut(s) 106, 977, 1131
GsuI CTGGAG 1 cut(s) 1241
HaeII RGCGCY 1 cut(s) 1264
HapII CCGG 3 cut(s) 718, 808, 1412
HgaI GACGC 1 cut(s) 1482
HhaI GCGC 1 cut(s) 1263
Hin1II CATG 9 cut(s) 437, 505, 581, 867, 950, 1138, 1300, 1355, 1571
Hin6I GCGC 1 cut(s) 1261
HinP1I GCGC 1 cut(s) 1261
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 8 cut(s) 30, 176, 280, 342, 355, 476, 704, 883
HpaII CCGG 3 cut(s) 718, 808, 1412
HphI GGTGA 2 cut(s) 112, 773
Hpy166II GTNNAC 6 cut(s) 38, 154, 180, 397, 562, 1453
Hpy188I TCNGA 5 cut(s) 175, 195, 411, 852, 861
Hpy188III TCNNGA 6 cut(s) 284, 329, 1016, 1193, 1230, 1531
Hpy8I GTNNAC 6 cut(s) 38, 154, 180, 397, 562, 1453
Hpy99I CGWCG 2 cut(s) 246, 342
HpyAV CCTTC 5 cut(s) 82, 86, 140, 465, 1043
HpyCH4III ACNGT 9 cut(s) 151, 323, 394, 421, 626, 989, 1433, 1450, 1481
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 7 cut(s) 512, 609, 752, 907, 985, 1083, 1107
HpyF10VI GCNNNNNNNGC 2 cut(s) 982, 1080
HpyF3I CTNAG 5 cut(s) 174, 408, 1032, 1194, 1335
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 9 cut(s) 437, 505, 581, 867, 950, 1138, 1300, 1355, 1571
HspAI GCGC 1 cut(s) 1261
Kzo9I GATC 7 cut(s) 223, 742, 799, 961, 1018, 1393, 1501
LmnI GCTCC 3 cut(s) 529, 847, 1300
Lsp1109I GCAGC 3 cut(s) 117, 988, 1142
LweI GCATC 3 cut(s) 402, 901, 916
MaeI CTAG 3 cut(s) 822, 1016, 1460
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 6 cut(s) 91, 317, 366, 580, 1024, 1291
MalI GATC 7 cut(s) 225, 744, 801, 963, 1020, 1395, 1503
MboI GATC 7 cut(s) 223, 742, 799, 961, 1018, 1393, 1501
MboII GAAGA 6 cut(s) 208, 450, 686, 930, 1001, 1378
MluCI AATT 8 cut(s) 9, 568, 768, 1162, 1222, 1279, 1328, 1360
MluI ACGCGT 1 cut(s) 363
MlyI GAGTC 3 cut(s) 185, 485, 713
MmeI TCCRAC 3 cut(s) 332, 651, 827
Mph1103I ATGCAT 1 cut(s) 909
MseI TTAA 5 cut(s) 203, 491, 639, 771, 1553
MslI CAYNNNNRTG 3 cut(s) 951, 1509, 1546
MspI CCGG 3 cut(s) 718, 808, 1412
MspR9I CCNGG 3 cut(s) 233, 347, 808
MvaI CCWGG 2 cut(s) 233, 347
MvnI CGCG 2 cut(s) 365, 966
MwoI GCNNNNNNNGC 2 cut(s) 982, 1080
NciI CCSGG 1 cut(s) 808
NcoI CCATGG 1 cut(s) 1296
NdeII GATC 7 cut(s) 223, 742, 799, 961, 1018, 1393, 1501
NlaIII CATG 9 cut(s) 437, 505, 581, 867, 950, 1138, 1300, 1355, 1571
NlaIV GGNNCC 3 cut(s) 525, 843, 1315
NmuCI GTSAC 2 cut(s) 317, 1024
NsiI ATGCAT 1 cut(s) 909
NspI RCATGY 2 cut(s) 581, 1355
NspV TTCGAA 1 cut(s) 403
PaeI GCATGC 1 cut(s) 1355
PciI ACATGT 1 cut(s) 577
PfeI GAWTC 5 cut(s) 30, 280, 342, 355, 883
PkrI GCNGC 3 cut(s) 107, 978, 1132
PleI GAGTC 3 cut(s) 184, 484, 712
PpsI GAGTC 3 cut(s) 184, 484, 712
PscI ACATGT 1 cut(s) 577
Psp6I CCWGG 2 cut(s) 231, 345
PspEI GGTNACC 1 cut(s) 1291
PspGI CCWGG 2 cut(s) 231, 345
PspN4I GGNNCC 3 cut(s) 525, 843, 1315
PspPI GGNCC 2 cut(s) 715, 1314
RsaI GTAC 7 cut(s) 237, 488, 563, 1219, 1410, 1435, 1483
RsaNI GTAC 7 cut(s) 236, 487, 562, 1218, 1409, 1434, 1482
RseI CAYNNNNRTG 3 cut(s) 951, 1509, 1546
Rsr2I CGGWCCG 1 cut(s) 715
RsrII CGGWCCG 1 cut(s) 715
SaqAI TTAA 5 cut(s) 203, 491, 639, 771, 1553
SatI GCNGC 3 cut(s) 106, 977, 1131
Sau3AI GATC 7 cut(s) 223, 742, 799, 961, 1018, 1393, 1501
Sau96I GGNCC 2 cut(s) 715, 1314
SchI GAGTC 3 cut(s) 185, 485, 713
ScrFI CCNGG 3 cut(s) 233, 347, 808
SfaNI GCATC 3 cut(s) 402, 901, 916
SfcI CTRYAG 3 cut(s) 21, 420, 1446
SfuI TTCGAA 1 cut(s) 403
SinI GGWCC 2 cut(s) 715, 1314
SmiMI CAYNNNNRTG 3 cut(s) 951, 1509, 1546
SmlI CTYRAG 2 cut(s) 329, 1346
SmoI CTYRAG 2 cut(s) 329, 1346
SpeI ACTAGT 1 cut(s) 821
SphI GCATGC 1 cut(s) 1355
Sse9I AATT 8 cut(s) 9, 568, 768, 1162, 1222, 1279, 1328, 1360
SspI AATATT 1 cut(s) 1111
SspMI CTAG 3 cut(s) 822, 1016, 1460
StyD4I CCNGG 3 cut(s) 231, 345, 806
StyI CCWWGG 2 cut(s) 219, 1296
TaaI ACNGT 9 cut(s) 151, 323, 394, 421, 626, 989, 1433, 1450, 1481
TaiI ACGT 1 cut(s) 373
TaqI TCGA 2 cut(s) 403, 1572
TaqII GACCGA 1 cut(s) 703
TasI AATT 8 cut(s) 9, 568, 768, 1162, 1222, 1279, 1328, 1360
TatI WGTACW 1 cut(s) 561
TfiI GAWTC 5 cut(s) 30, 280, 342, 355, 883
Tru1I TTAA 5 cut(s) 203, 491, 639, 771, 1553
Tru9I TTAA 5 cut(s) 203, 491, 639, 771, 1553
TscAI CASTG 6 cut(s) 40, 51, 156, 326, 1003, 1455
TseFI GTSAC 2 cut(s) 317, 1024
TseI GCWGC 3 cut(s) 105, 976, 1130
Tsp45I GTSAC 2 cut(s) 317, 1024
TspDTI ATGAA 3 cut(s) 259, 518, 1341
TspGWI ACGGA 1 cut(s) 1483
TspRI CASTG 6 cut(s) 40, 51, 156, 326, 1003, 1455
VpaK11BI GGWCC 2 cut(s) 715, 1314
XapI RAATTY 2 cut(s) 9, 568
XbaI TCTAGA 1 cut(s) 1015
XceI RCATGY 2 cut(s) 581, 1355
XcmI CCANNNNNNNNNTGG 1 cut(s) 1447
XspI CTAG 3 cut(s) 822, 1016, 1460
Zsp2I ATGCAT 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.