FvH4_6g19370

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003953
Physical Location & Seq
Reverse (-)
12920991 .. 12924301
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19370.t1

Sequence Viewer

Length: 972 bp
ATGGACTTATGTCTCCCTTTCCCATGTTGTGTCTTCGACTGTGAGTCTTTGAGGTCTTTAATTGTCGACATGAGGTGTACTGTTCTTAAAGCTTCATCATTTGCTACATCTCACGTCTCTAATCTGGTATGCATGATGTTAACAAATATTACTTTTGAAGATGATAAGGGGTTTTGCAAATGGGTCTCAATCTCCTGCAGATTCCTTAAGGAATTGCTTATTGATCATGTTAATGGGTTGGAAAATATCACCATTGAAAGTTCGTCCTTGGAATCATTCAGTCGGAACTCTGGCAGCTCCTGCAGAGCATTGCAACTTACTTGTCCAAATCTAAAGCGTCTGAAGTGGGTTGGATATTATCTTCCTATTAACTTGTTCATGGGAGAATTCAACTGCTTAGAAGAAGTCGAAATTTCGTTTAGCAATCCTGAAGTTGATTATGCAAGAGCTGACTTCATTAGTGCCCGTGATAATCTGTTGCGCAGTATGTGCAGTGTTAAAGCTCTTGTTCTTGATCCAATTACTGTAGAGATTCTATTCAAGGGTGGTTCTCCACATGCACCATTCTTGAACCTTTGGAGCTTGCATGTTCGAATTCATGAAAGTATTTGTAATGCTACAGGCCCTGCTCTGGCCGCTCTTCTCAACGGAGCGTCAAATTTGAATACTTTGGATATATCATCCAAATCACCTAAAATTTCTAATGGAATTCAATCATTTGGATACGCTAAGGGATATTGGGCAAAACCAGGCCTCCTTGATTTTACATCTCAGCTGAAAGAGGTAACCCTGGAGCTCACCAATGGTTCTAATGGAATTGCATTAGCGTGGCATATTCTTGAGCATGCTCAGAATTTGAAAAAGATGATCATTATTTGTTTCCCCATTTTGCCGCATCATTATAATTTTTTGATGAAGTTGGAGGGAACCAAGATTATTTCCAACGCCACAATTACGATTCAGAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

324

Amino Acids

35.99

Weight (kDa)

6.74

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 903
Acc16I TGCGCA 1 cut(s) 482
AccBSI CCGCTC 1 cut(s) 638
AccI GTMKAC 1 cut(s) 66
AciI CCGC 2 cut(s) 636, 893
AclWI GGATC 1 cut(s) 509
AcoI YGGCCR 1 cut(s) 633
AcsI RAATTY 7 cut(s) 386, 411, 594, 658, 696, 708, 853
AcuI CTGAAG 2 cut(s) 362, 450
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 631
AflII CTTAAG 1 cut(s) 206
AgsI TTSAA 8 cut(s) 158, 257, 391, 541, 571, 664, 713, 859
AhdI GACNNNNNGTC 1 cut(s) 43
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 2 cut(s) 748, 789
AluBI AGCT 7 cut(s) 92, 297, 449, 503, 582, 775, 796
AluI AGCT 7 cut(s) 92, 297, 449, 503, 582, 775, 796
Alw21I GWGCWC 1 cut(s) 798
Alw26I GTCTC 3 cut(s) 17, 121, 190
AlwI GGATC 1 cut(s) 509
AlwNI CAGNNNCTG 2 cut(s) 300, 626
AoxI GGCC 3 cut(s) 622, 633, 751
ApeKI GCWGC 1 cut(s) 294
ApoI RAATTY 7 cut(s) 386, 411, 594, 658, 696, 708, 853
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 623
AsuHPI GGTGA 3 cut(s) 241, 681, 790
AsuII TTCGAA 1 cut(s) 592
BaeGI GKGCMC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 798
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 798
BbvI GCAGC 1 cut(s) 306
BciT130I CCWGG 2 cut(s) 750, 791
BciVI GTATCC 1 cut(s) 716
BclI TGATCA 2 cut(s) 223, 867
BcoDI GTCTC 3 cut(s) 17, 121, 190
BfmI CTRYAG 4 cut(s) 196, 301, 525, 618
BfrI CTTAAG 1 cut(s) 206
BfuI GTATCC 1 cut(s) 716
BisI GCNGC 3 cut(s) 295, 636, 893
BlsI GCNGC 3 cut(s) 296, 637, 894
Bme1390I CCNGG 2 cut(s) 750, 791
BmeRI GACNNNNNGTC 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 623
BmiI GGNNCC 1 cut(s) 928
BmrFI CCNGG 2 cut(s) 750, 791
BmsI GCATC 1 cut(s) 904
BoxI GACNNNNGTC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 812
Bpu10I CCTNAGC 1 cut(s) 729
Bpu14I TTCGAA 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 860
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 267, 789
BsaXI ACNNNNNCTCC 2 cut(s) 738, 768
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse3DI GCAATG 1 cut(s) 308
BseBI CCWGG 2 cut(s) 750, 791
BseDI CCNNGG 2 cut(s) 267, 789
BseGI GGATG 1 cut(s) 680
BseLI CCNNNNNNNGG 1 cut(s) 631
BseMI GCAATG 1 cut(s) 308
BseMII CTCAG 2 cut(s) 785, 863
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 1 cut(s) 306
BsgI GTGCAG 1 cut(s) 511
BshFI GGCC 3 cut(s) 624, 635, 753
BsiHKAI GWGCWC 1 cut(s) 798
BslI CCNNNNNNNGG 1 cut(s) 631
BsmAI GTCTC 3 cut(s) 17, 121, 190
BsmBI CGTCTC 1 cut(s) 121
BsnI GGCC 3 cut(s) 624, 635, 753
Bso31I GGTCTC 1 cut(s) 190
Bsp119I TTCGAA 1 cut(s) 592
Bsp1286I GDGCHC 2 cut(s) 466, 798
Bsp143I GATC 3 cut(s) 223, 514, 867
BspACI CCGC 2 cut(s) 636, 893
BspANI GGCC 3 cut(s) 624, 635, 753
BspCNI CTCAG 2 cut(s) 784, 862
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 928
BspMAI CTGCAG 2 cut(s) 200, 305
BspPI GGATC 1 cut(s) 509
BspQI GCTCTTC 1 cut(s) 645
BspT104I TTCGAA 1 cut(s) 592
BspTI CTTAAG 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 190
BsrBI CCGCTC 1 cut(s) 638
BsrDI GCAATG 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 267, 789
BssMI GATC 3 cut(s) 223, 514, 867
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 750, 791
Bst4CI ACNGT 3 cut(s) 41, 82, 526
Bst6I CTCTTC 1 cut(s) 645
BstAFI CTTAAG 1 cut(s) 206
BstAPI GCANNNNNTGC 2 cut(s) 300, 489
BstBI TTCGAA 1 cut(s) 592
BstC8I GCNNGC 2 cut(s) 584, 846
BstDEI CTNAG 4 cut(s) 397, 729, 771, 849
BstEII GGTNACC 1 cut(s) 784
BstF5I GGATG 1 cut(s) 680
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 3 cut(s) 226, 517, 870
BstMAI GTCTC 3 cut(s) 17, 121, 190
BstMBI GATC 3 cut(s) 223, 514, 867
BstMWI GCNNNNNNNGC 3 cut(s) 300, 489, 635
BstNI CCWGG 2 cut(s) 750, 791
BstNSI RCATGY 3 cut(s) 560, 590, 848
BstPAI GACNNNNGTC 1 cut(s) 9
BstPI GGTNACC 1 cut(s) 784
BstSCI CCNGG 2 cut(s) 748, 789
BstSFI CTRYAG 4 cut(s) 196, 301, 525, 618
BstSLI GKGCMC 1 cut(s) 466
BstV1I GCAGC 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 25
BsuI GTATCC 1 cut(s) 716
BsuRI GGCC 3 cut(s) 624, 635, 753
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 680
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 1 cut(s) 499
Cac8I GCNNGC 2 cut(s) 584, 846
CaiI CAGNNNCTG 2 cut(s) 300, 626
CciI TCATGA 1 cut(s) 598
CfoI GCGC 1 cut(s) 483
Cfr13I GGNCC 1 cut(s) 623
CseI GACGC 2 cut(s) 326, 642
Csp6I GTAC 1 cut(s) 78
CviAII CATG 9 cut(s) 24, 70, 133, 227, 379, 557, 587, 599, 845
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 4 cut(s) 397, 729, 771, 849
DpnI GATC 3 cut(s) 225, 516, 869
DpnII GATC 3 cut(s) 223, 514, 867
DriI GACNNNNNGTC 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 633
Eam1104I CTCTTC 1 cut(s) 645
Eam1105I GACNNNNNGTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 645
Ecl136II GAGCTC 1 cut(s) 796
Eco130I CCWWGG 1 cut(s) 267
Eco147I AGGCCT 1 cut(s) 753
Eco24I GRGCYC 1 cut(s) 798
Eco31I GGTCTC 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 796
Eco57I CTGAAG 2 cut(s) 362, 450
Eco91I GGTNACC 1 cut(s) 784
EcoICRI GAGCTC 1 cut(s) 796
EcoO109I RGGNCCY 1 cut(s) 623
EcoO65I GGTNACC 1 cut(s) 784
EcoRI GAATTC 3 cut(s) 386, 594, 708
EcoRII CCWGG 2 cut(s) 748, 789
EcoT14I CCWWGG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 798
ErhI CCWWGG 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 9 cut(s) 27, 73, 136, 230, 382, 560, 590, 602, 848
FatI CATG 9 cut(s) 23, 69, 132, 226, 378, 556, 586, 598, 844
FbaI TGATCA 2 cut(s) 223, 867
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 295, 636, 893
FokI GGATG 1 cut(s) 667
FriOI GRGCYC 1 cut(s) 798
Fsp4HI GCNGC 3 cut(s) 295, 636, 893
FspI TGCGCA 1 cut(s) 482
GlaI GCGC 1 cut(s) 482
GluI GCNGC 3 cut(s) 295, 636, 893
GsuI CTGGAG 1 cut(s) 812
HaeIII GGCC 3 cut(s) 624, 635, 753
HgaI GACGC 2 cut(s) 326, 642
HhaI GCGC 1 cut(s) 483
Hin1II CATG 9 cut(s) 27, 73, 136, 230, 382, 560, 590, 602, 848
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HincII GTYRAC 2 cut(s) 67, 141
HindII GTYRAC 2 cut(s) 67, 141
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 5 cut(s) 44, 201, 272, 532, 958
HpaI GTTAAC 1 cut(s) 141
HphI GGTGA 3 cut(s) 241, 681, 790
Hpy166II GTNNAC 3 cut(s) 67, 78, 141
Hpy188I TCNGA 4 cut(s) 285, 342, 852, 963
Hpy188III TCNNGA 5 cut(s) 428, 512, 568, 599, 839
Hpy8I GTNNAC 3 cut(s) 67, 78, 141
HpyCH4III ACNGT 3 cut(s) 41, 82, 526
HpyCH4IV ACGT 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 3 cut(s) 300, 489, 635
HpyF3I CTNAG 4 cut(s) 397, 729, 771, 849
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 9 cut(s) 27, 73, 136, 230, 382, 560, 590, 602, 848
HspAI GCGC 1 cut(s) 481
Ksp22I TGATCA 2 cut(s) 223, 867
KspAI GTTAAC 1 cut(s) 141
Kzo9I GATC 3 cut(s) 223, 514, 867
LguI GCTCTTC 1 cut(s) 645
LmnI GCTCC 4 cut(s) 302, 579, 650, 793
Lsp1109I GCAGC 1 cut(s) 306
LweI GCATC 1 cut(s) 904
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 784
MalI GATC 3 cut(s) 225, 516, 869
MbiI CCGCTC 1 cut(s) 638
MboI GATC 3 cut(s) 223, 514, 867
MboII GAAGA 5 cut(s) 25, 170, 353, 413, 632
MhlI GDGCHC 2 cut(s) 466, 798
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 5 cut(s) 219, 263, 331, 900, 966
MnlI CCTC 5 cut(s) 45, 66, 764, 775, 916
Mph1103I ATGCAT 1 cut(s) 134
MseI TTAA 7 cut(s) 59, 87, 140, 207, 231, 369, 498
MslI CAYNNNNRTG 2 cut(s) 231, 826
MspA1I CMGCKG 1 cut(s) 775
MspCI CTTAAG 1 cut(s) 206
MspR9I CCNGG 2 cut(s) 750, 791
MvaI CCWGG 2 cut(s) 750, 791
MwoI GCNNNNNNNGC 3 cut(s) 300, 489, 635
NdeII GATC 3 cut(s) 223, 514, 867
NlaIII CATG 9 cut(s) 27, 73, 136, 230, 382, 560, 590, 602, 848
NlaIV GGNNCC 1 cut(s) 928
NsbI TGCGCA 1 cut(s) 482
NsiI ATGCAT 1 cut(s) 134
NspI RCATGY 3 cut(s) 560, 590, 848
NspV TTCGAA 1 cut(s) 592
PaeI GCATGC 1 cut(s) 848
PagI TCATGA 1 cut(s) 598
PceI AGGCCT 1 cut(s) 753
PciSI GCTCTTC 1 cut(s) 645
PfeI GAWTC 4 cut(s) 201, 272, 532, 958
PkrI GCNGC 3 cut(s) 296, 637, 894
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PshAI GACNNNNGTC 1 cut(s) 9
PsiI TTATAA 1 cut(s) 903
Psp124BI GAGCTC 1 cut(s) 798
Psp6I CCWGG 2 cut(s) 748, 789
PspEI GGTNACC 1 cut(s) 784
PspGI CCWGG 2 cut(s) 748, 789
PspN4I GGNNCC 1 cut(s) 928
PspPI GGNCC 1 cut(s) 623
PstI CTGCAG 2 cut(s) 200, 305
PstNI CAGNNNCTG 2 cut(s) 300, 626
PvuII CAGCTG 1 cut(s) 775
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 2 cut(s) 231, 826
SacI GAGCTC 1 cut(s) 798
SalI GTCGAC 1 cut(s) 65
SapI GCTCTTC 1 cut(s) 645
SaqAI TTAA 7 cut(s) 59, 87, 140, 207, 231, 369, 498
SatI GCNGC 3 cut(s) 295, 636, 893
Sau3AI GATC 3 cut(s) 223, 514, 867
Sau96I GGNCC 1 cut(s) 623
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 2 cut(s) 750, 791
SduI GDGCHC 2 cut(s) 466, 798
SfaNI GCATC 1 cut(s) 904
SfcI CTRYAG 4 cut(s) 196, 301, 525, 618
SfuI TTCGAA 1 cut(s) 592
SmiMI CAYNNNNRTG 2 cut(s) 231, 826
SmlI CTYRAG 2 cut(s) 206, 839
SmoI CTYRAG 2 cut(s) 206, 839
SphI GCATGC 1 cut(s) 848
SseBI AGGCCT 1 cut(s) 753
SsiI CCGC 2 cut(s) 636, 893
SspI AATATT 1 cut(s) 148
SstI GAGCTC 1 cut(s) 798
StuI AGGCCT 1 cut(s) 753
StyD4I CCNGG 2 cut(s) 748, 789
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 3 cut(s) 41, 82, 526
TaiI ACGT 1 cut(s) 117
TaqI TCGA 4 cut(s) 36, 66, 408, 592
TatI WGTACW 1 cut(s) 77
TauI GCSGC 2 cut(s) 638, 895
TfiI GAWTC 4 cut(s) 201, 272, 532, 958
Tru1I TTAA 7 cut(s) 59, 87, 140, 207, 231, 369, 498
Tru9I TTAA 7 cut(s) 59, 87, 140, 207, 231, 369, 498
TscAI CASTG 1 cut(s) 499
TseI GCWGC 1 cut(s) 294
TspDTI ATGAA 6 cut(s) 84, 367, 445, 587, 615, 929
TspGWI ACGGA 1 cut(s) 663
TspRI CASTG 1 cut(s) 499
Vha464I CTTAAG 1 cut(s) 206
XapI RAATTY 7 cut(s) 386, 411, 594, 658, 696, 708, 853
XceI RCATGY 3 cut(s) 560, 590, 848
XmiI GTMKAC 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.