Rorug03G0138500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003953
Physical Location & Seq
Forward (+)
11373560 .. 11374273
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0138500.1

Sequence Viewer

Length: 441 bp
ATGGCGGTTGTACTTAACTACCATCAACCTCTGGGTTTAGCTGTTCAGCCCCAATCCCAAAACCCTAACTTCAATTCCCGCAAAATTTACCGAACCCAACTGAATACCTTGAATTCTCGACGGCGCCGAGTAATCAATTGCTCGAATGGAGACTCAGACTCCGACCCAAACAGTCCACAAGATAAGGAAGTGAACAGTTTGGGAGTTAAAGCCGCGTTGTCGATGCTCAAATTCTACAAAAGGGAGATTTCGCCTTTGATGCCGAAAAGTTGCCGGTACGTACCGACTTGCAGTGAGTACTCGATGGAAGCTTACAAGAGATATGGGGTTGCAAAAGGTACAGTCTTGACTGCTTGGCGTCTCTGCCGCTGCAATCCCCTAGGTGGTTCTGGTTATGATCCTCCTCGATGGTTCAATGAGACAAATATGCCTGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

146

Amino Acids

16.61

Weight (kDa)

9.42

Isoelectric Point (pI)

63.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YidD PF01809 71 - 134 9e-27 Putative membrane protein insertion efficiency factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 123
AccII CGCG 1 cut(s) 215
AciI CCGC 4 cut(s) 5, 79, 213, 367
AclWI GGATC 1 cut(s) 392
AcsI RAATTY 3 cut(s) 84, 112, 230
AcyI GRCGYC 2 cut(s) 124, 358
AfaI GTAC 5 cut(s) 12, 278, 282, 299, 340
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 3 cut(s) 73, 112, 415
AluBI AGCT 2 cut(s) 41, 311
AluI AGCT 2 cut(s) 41, 311
Alw26I GTCTC 3 cut(s) 144, 365, 413
AlwI GGATC 1 cut(s) 392
ApeKI GCWGC 1 cut(s) 369
ApoI RAATTY 3 cut(s) 84, 112, 230
AspA2I CCTAGG 1 cut(s) 379
AspLEI GCGC 1 cut(s) 126
AvrII CCTAGG 1 cut(s) 379
BanI GGYRCC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 356
BccI CCATC 3 cut(s) 30, 298, 402
BceAI ACGGC 1 cut(s) 137
BcoDI GTCTC 3 cut(s) 144, 365, 413
BfaI CTAG 1 cut(s) 380
BfoI RGCGCY 1 cut(s) 127
BisI GCNGC 3 cut(s) 213, 367, 370
BlnI CCTAGG 1 cut(s) 379
BlsI GCNGC 3 cut(s) 214, 368, 371
BmcAI AGTACT 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 125
BmsI GCATC 2 cut(s) 213, 249
BsaAI YACGTR 1 cut(s) 280
BsaHI GRCGYC 2 cut(s) 124, 358
BsaJI CCNNGG 1 cut(s) 379
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse118I RCCGGY 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 379
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 1 cut(s) 356
Bsh1236I CGCG 1 cut(s) 215
BshNI GGYRCC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 3 cut(s) 144, 365, 413
BsmBI CGTCTC 1 cut(s) 365
Bsp143I GATC 1 cut(s) 397
BspACI CCGC 4 cut(s) 5, 79, 213, 367
BspCNI CTCAG 1 cut(s) 167
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 125
BspPI GGATC 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 273
BssAI RCCGGY 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 379
BssMI GATC 1 cut(s) 397
BssNI GRCGYC 2 cut(s) 124, 358
BssT1I CCWWGG 1 cut(s) 379
Bst4CI ACNGT 3 cut(s) 173, 197, 343
BstACI GRCGYC 2 cut(s) 124, 358
BstBAI YACGTR 1 cut(s) 280
BstDEI CTNAG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 215
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 1 cut(s) 400
BstMAI GTCTC 3 cut(s) 144, 365, 413
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstSNI TACGTA 1 cut(s) 280
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 356
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 298
CfoI GCGC 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 273
CseI GACGC 1 cut(s) 347
Csp6I GTAC 5 cut(s) 11, 277, 281, 298, 339
CviJI RGCY 4 cut(s) 41, 49, 212, 311
CviKI_1 RGCY 4 cut(s) 41, 49, 212, 311
CviQI GTAC 5 cut(s) 11, 277, 281, 298, 339
DdeI CTNAG 1 cut(s) 154
DinI GGCGCC 1 cut(s) 125
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
Eco105I TACGTA 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 379
EgeI GGCGCC 1 cut(s) 125
EheI GGCGCC 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 379
Esp3I CGTCTC 1 cut(s) 365
FaiI YATR 3 cut(s) 324, 396, 428
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 3 cut(s) 213, 367, 370
Fsp4HI GCNGC 3 cut(s) 213, 367, 370
FspBI CTAG 1 cut(s) 380
GlaI GCGC 1 cut(s) 125
GluI GCNGC 3 cut(s) 213, 367, 370
HaeII RGCGCY 1 cut(s) 127
HapII CCGG 1 cut(s) 274
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 2 cut(s) 124, 358
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 2 cut(s) 152, 158
HpaII CCGG 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 176, 193
Hpy188I TCNGA 2 cut(s) 157, 163
Hpy188III TCNNGA 2 cut(s) 117, 346
Hpy8I GTNNAC 2 cut(s) 176, 193
Hpy99I CGWCG 1 cut(s) 123
HpyCH4III ACNGT 3 cut(s) 173, 197, 343
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 3 cut(s) 291, 332, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 1 cut(s) 154
HpySE526I ACGT 1 cut(s) 279
Hsp92I GRCGYC 2 cut(s) 124, 358
HspAI GCGC 1 cut(s) 124
KasI GGCGCC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 397
LpnPI CCDG 3 cut(s) 17, 287, 375
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 2 cut(s) 213, 249
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 279
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MfeI CAATTG 1 cut(s) 136
MluCI AATT 5 cut(s) 73, 84, 112, 136, 230
Mly113I GGCGCC 1 cut(s) 124
MlyI GAGTC 2 cut(s) 146, 152
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 3 cut(s) 39, 411, 414
MseI TTAA 2 cut(s) 15, 207
MspA1I CMGCKG 1 cut(s) 369
MspI CCGG 1 cut(s) 274
MunI CAATTG 1 cut(s) 136
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 259
NarI GGCGCC 1 cut(s) 124
NdeII GATC 1 cut(s) 397
NlaIV GGNNCC 1 cut(s) 125
NmeAIII GCCGAG 1 cut(s) 152
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PkrI GCNGC 3 cut(s) 214, 368, 371
PleI GAGTC 2 cut(s) 146, 152
PluTI GGCGCC 1 cut(s) 127
PpsI GAGTC 2 cut(s) 146, 152
Ppu21I YACGTR 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 125
RsaI GTAC 5 cut(s) 12, 278, 282, 299, 340
RsaNI GTAC 5 cut(s) 11, 277, 281, 298, 339
SaqAI TTAA 2 cut(s) 15, 207
SatI GCNGC 3 cut(s) 213, 367, 370
Sau3AI GATC 1 cut(s) 397
ScaI AGTACT 1 cut(s) 299
SchI GAGTC 2 cut(s) 146, 152
SetI ASST 7 cut(s) 31, 43, 110, 282, 313, 340, 385
SfaNI GCATC 2 cut(s) 213, 249
SfoI GGCGCC 1 cut(s) 125
SnaBI TACGTA 1 cut(s) 280
Sse9I AATT 5 cut(s) 73, 84, 112, 136, 230
SsiI CCGC 4 cut(s) 5, 79, 213, 367
SspDI GGCGCC 1 cut(s) 123
SspMI CTAG 1 cut(s) 380
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 3 cut(s) 173, 197, 343
TaiI ACGT 1 cut(s) 282
TaqI TCGA 5 cut(s) 118, 143, 221, 302, 406
TasI AATT 5 cut(s) 73, 84, 112, 136, 230
TatI WGTACW 2 cut(s) 10, 297
TauI GCSGC 2 cut(s) 215, 369
Tru1I TTAA 2 cut(s) 15, 207
Tru9I TTAA 2 cut(s) 15, 207
TscAI CASTG 1 cut(s) 298
TseI GCWGC 1 cut(s) 369
TspRI CASTG 1 cut(s) 298
XapI RAATTY 3 cut(s) 84, 112, 230
XmaJI CCTAGG 1 cut(s) 379
XspI CTAG 1 cut(s) 380
ZrmI AGTACT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.