Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003953

Physical Location & Seq

Genomic Coordinates Reverse (-)

25222663 .. 25224161

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG240700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCTACAAAGACCTTTTGGGCCGAACGTGGTTAGTCCTAAAGGGATTCAGATTGAATTTCCTTCATGCGTTTTTGTTTGTGGGTCTTTGAGGTCTTTAACTTTGGACGTGGCACATGTGATTTTGAAATCCCCTTGTTCTAGCTCCAATCTGGTCTGCTTGAAACTGGTAAATGTTACTGTAGAAGATGATGATGGGTTTTGCAAATGGGTATCGCTTTACTGCAAATCCCTCAAGGAATTGTCGCTTTGGGGAGTGCAAGGCCCCAAGAATGTCACCATTAAGAGCTCGTCTCTGGAATTGTTCGTGATTCTTCCTCGTATCTTCCATCTTACCATTTCTGGTGAGAAACTTGAAAAAATATATGTAGATTGGGGTTTTCCAGCACACACCAATTCTTTGAATGTTTTTGCTCCAAATCTCAAGTACCAGACATGGTTTGGAAACATAATGAACTATCATTCTCTTGGAGAGTTGAATTGCTTGGAACAAGTCGATATTTGTGTCTGTACTATGTTGACTAAAGGAACTGGGCGAATTCTTGACTTACACAGCAAACTCGATAAGTTCTTCGGCAGTATCCGAAGCGTTAAAGTTCTTGTTATAAAACAACACACTGCTCAGAAGCTGATGGAGGAAGTCTTCATGCATTTCCTGGAATCATTCTATAATGTTCGGAATTTGGGTGTTAGTATTAGCTCAGATTTGGATGACAAGATGATTCCATCAATAGTCTCTCTTCTCAGAGCAGTGCCTAATTTCACTACTTTGGATATAAGATCGCCTCGCGATAAAGTCTTTTTTTCCGGTGGACCTGTTGTAAGTGATGGTTTTATTTGTTGTCCTTCCTTAATTTGTGACTTTTTAATTGAGTTGGGTTTCTTGTTTGTCAAACTTTTCCAGGAATCATCATTCGATACTGGTCATTGGCAACTGCAAGAACTCGACTTCATCAATCGGATTAAGGAGGTAACAATAGAGATTACTGATGGGTCTAATGGAATTGAGTTTGCAAAGTATGTGCTGGAGAATTCTCCTAGTTTGAAAATAATGTCCATCATATGTGCACCCACTCAAAAATCAAGCTTGATGGAAGGGTTTAGGACAAGTAGGGTTATAAACCCTATCATGATTGTCTTTCTGGCTCAAGACAACAAGAATAAAGTAATAGTTAGTGCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

394

Amino Acids

44.24

Weight (kDa)

7.07

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g19053 FvH4_6g19370 FvH4_6g22710 FvH4_6g22710 FvH4_6g33902 FvH4_7g12363
malus_domestica	MD14G1025800.v1.1
pyrus_communis	pycom14g02500
rosa_chinensis	RchiOBHm_Chr3g0481121
rosa_laevigata	RLG00000023419 RLG00000023953
rosa_multiflora	Rmu_sc0001551.1_g000014 Rmu_sc0001551.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400620 Rroxscaffold_6G00407510
rosa_rugosa	Rorug03G0138200 Rorug03G0138500 Rorug03G0138600
rosa_samantha	Rh3AG188300 Rh3AG188400 Rh3AG240700 Rh3AG316900 Rh3BG217200 Rh3BG217400 Rh3BG217600 Rh3BG276400 Rh3CG213300 Rh3CG213500 Rh3DG267800 Rh7DG163400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	605, 1118
AccII	CGCG	1 cut(s)	789
AcsI	RAATTY	4 cut(s)	56, 537, 679, 1030
AfaI	GTAC	2 cut(s)	428, 511
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	7 cut(s)	56, 127, 163, 356, 403, 478, 1045
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	2 cut(s)	654, 900
AluBI	AGCT	5 cut(s)	144, 288, 628, 699, 1086
AluI	AGCT	5 cut(s)	144, 288, 628, 699, 1086
Alw21I	GWGCWC	3 cut(s)	290, 1069, 1180
Alw26I	GTCTC	2 cut(s)	297, 739
Alw44I	GTGCAC	1 cut(s)	1065
AlwNI	CAGNNNCTG	1 cut(s)	628
AoxI	GGCC	2 cut(s)	20, 262
ApaLI	GTGCAC	1 cut(s)	1065
ApoI	RAATTY	4 cut(s)	56, 537, 679, 1030
AspS9I	GGNCC	3 cut(s)	20, 263, 812
AsuHPI	GGTGA	2 cut(s)	268, 356
AvaII	GGWCC	1 cut(s)	812
BaeGI	GKGCMC	1 cut(s)	1069
BanII	GRGCYC	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	634
Bbv12I	GWGCWC	3 cut(s)	290, 1069, 1180
BccI	CCATC	8 cut(s)	188, 336, 625, 733, 821, 983, 1064, 1084
BciT130I	CCWGG	2 cut(s)	656, 902
BciVI	GTATCC	1 cut(s)	590
BcoDI	GTCTC	2 cut(s)	297, 739
BfaI	CTAG	2 cut(s)	141, 1038
BfmI	CTRYAG	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	590
Bme1390I	CCNGG	2 cut(s)	656, 902
Bme18I	GGWCC	1 cut(s)	812
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	3 cut(s)	20, 263, 812
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	2 cut(s)	656, 902
BmrI	ACTGGG	1 cut(s)	540
BmuI	ACTGGG	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	634
BplI	GAGNNNNNCTC	2 cut(s)	277, 309
BpmI	CTGGAG	1 cut(s)	1046
BpuEI	CTTGAG	3 cut(s)	218, 407, 1131
BsaWI	WCCGGW	1 cut(s)	806
Bse1I	ACTGG	3 cut(s)	171, 535, 925
BseBI	CCWGG	2 cut(s)	656, 902
BseGI	GGATG	1 cut(s)	715
BseMII	CTCAG	3 cut(s)	635, 714, 757
BseNI	ACTGG	3 cut(s)	171, 535, 925
BseSI	GKGCMC	1 cut(s)	1069
Bsh1236I	CGCG	1 cut(s)	789
BshFI	GGCC	2 cut(s)	22, 264
BsiHKAI	GWGCWC	3 cut(s)	290, 1069, 1180
BsiSI	CCGG	1 cut(s)	807
BsmAI	GTCTC	2 cut(s)	297, 739
BsmBI	CGTCTC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	22, 264
Bsp1286I	GDGCHC	3 cut(s)	290, 1069, 1180
Bsp143I	GATC	1 cut(s)	779
Bsp68I	TCGCGA	1 cut(s)	789
BspANI	GGCC	2 cut(s)	22, 264
BspCNI	CTCAG	3 cut(s)	634, 713, 756
BspFNI	CGCG	1 cut(s)	789
BspHI	TCATGA	1 cut(s)	1128
BspLI	GGNNCC	1 cut(s)	265
BsrI	ACTGG	3 cut(s)	171, 535, 925
BssMI	GATC	1 cut(s)	779
Bst2UI	CCWGG	2 cut(s)	656, 902
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	744
BstDEI	CTNAG	3 cut(s)	621, 700, 743
BstF5I	GGATG	1 cut(s)	715
BstFNI	CGCG	1 cut(s)	789
BstKTI	GATC	1 cut(s)	782
BstMAI	GTCTC	2 cut(s)	297, 739
BstMBI	GATC	1 cut(s)	779
BstNI	CCWGG	2 cut(s)	656, 902
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	654, 900
BstSFI	CTRYAG	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	1069
BstUI	CGCG	1 cut(s)	789
BstV2I	GAAGAC	1 cut(s)	634
BsuI	GTATCC	1 cut(s)	590
BsuRI	GGCC	2 cut(s)	22, 264
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	715
BtsI	GCAGTG	2 cut(s)	615, 756
BtsIMutI	CAGTG	2 cut(s)	615, 756
BtuMI	TCGCGA	1 cut(s)	789
CaiI	CAGNNNCTG	1 cut(s)	628
CciI	TCATGA	1 cut(s)	1128
Cfr13I	GGNCC	3 cut(s)	20, 263, 812
Csp6I	GTAC	2 cut(s)	427, 510
CviAII	CATG	5 cut(s)	66, 116, 435, 646, 1129
CviJI	RGCY	8 cut(s)	22, 144, 264, 288, 628, 699, 1086, 1145
CviKI_1	RGCY	8 cut(s)	22, 144, 264, 288, 628, 699, 1086, 1145
CviQI	GTAC	2 cut(s)	427, 510
DdeI	CTNAG	3 cut(s)	621, 700, 743
DpnI	GATC	1 cut(s)	781
DpnII	GATC	1 cut(s)	779
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
Ecl136II	GAGCTC	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	812
Eco53kI	GAGCTC	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRI	GAATTC	2 cut(s)	537, 1030
EcoRII	CCWGG	2 cut(s)	654, 900
EcoT22I	ATGCAT	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	290
Esp3I	CGTCTC	1 cut(s)	297
FaeI	CATG	5 cut(s)	69, 119, 438, 649, 1132
FatI	CATG	5 cut(s)	65, 115, 434, 645, 1128
FauNDI	CATATG	1 cut(s)	1061
FokI	GGATG	1 cut(s)	722
FriOI	GRGCYC	1 cut(s)	290
FspBI	CTAG	2 cut(s)	141, 1038
GsuI	CTGGAG	1 cut(s)	1046
HaeIII	GGCC	2 cut(s)	22, 264
HapII	CCGG	1 cut(s)	807
Hin1II	CATG	5 cut(s)	69, 119, 438, 649, 1132
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HindIII	AAGCTT	1 cut(s)	1084
HinfI	GANTC	5 cut(s)	46, 310, 659, 721, 905
HpaII	CCGG	1 cut(s)	807
HphI	GGTGA	2 cut(s)	268, 356
Hpy166II	GTNNAC	3 cut(s)	519, 812, 1067
Hpy188I	TCNGA	7 cut(s)	51, 584, 624, 678, 703, 746, 960
Hpy188III	TCNNGA	6 cut(s)	296, 307, 542, 788, 1129, 1148
Hpy8I	GTNNAC	3 cut(s)	519, 812, 1067
HpyAV	CCTTC	3 cut(s)	72, 855, 1088
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	27, 108
HpyCH4V	TGCA	7 cut(s)	204, 225, 259, 649, 937, 1013, 1067
HpyF3I	CTNAG	3 cut(s)	621, 700, 743
HpySE526I	ACGT	2 cut(s)	27, 108
Hsp92II	CATG	5 cut(s)	69, 119, 438, 649, 1132
Kzo9I	GATC	1 cut(s)	779
LmnI	GCTCC	2 cut(s)	149, 418
MaeI	CTAG	2 cut(s)	141, 1038
MaeII	ACGT	2 cut(s)	27, 108
MaeIII	GTNAC	4 cut(s)	175, 274, 857, 970
MalI	GATC	1 cut(s)	781
MboI	GATC	1 cut(s)	779
MboII	GAAGA	6 cut(s)	197, 305, 316, 562, 634, 731
MhlI	GDGCHC	3 cut(s)	290, 1069, 1180
MnlI	CCTC	6 cut(s)	84, 242, 327, 628, 795, 961
Mph1103I	ATGCAT	1 cut(s)	651
MseI	TTAA	6 cut(s)	98, 282, 591, 851, 866, 963
MspI	CCGG	1 cut(s)	807
MspR9I	CCNGG	2 cut(s)	656, 902
MvaI	CCWGG	2 cut(s)	656, 902
MvnI	CGCG	1 cut(s)	789
NdeI	CATATG	1 cut(s)	1061
NdeII	GATC	1 cut(s)	779
NlaIII	CATG	5 cut(s)	69, 119, 438, 649, 1132
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	2 cut(s)	274, 857
NruI	TCGCGA	1 cut(s)	789
NsiI	ATGCAT	1 cut(s)	651
NspI	RCATGY	1 cut(s)	119
PagI	TCATGA	1 cut(s)	1128
PciI	ACATGT	1 cut(s)	115
PfeI	GAWTC	5 cut(s)	46, 310, 659, 721, 905
PfoI	TCCNGGA	2 cut(s)	654, 900
PscI	ACATGT	1 cut(s)	115
PsiI	TTATAA	2 cut(s)	605, 1118
Psp124BI	GAGCTC	1 cut(s)	290
Psp6I	CCWGG	2 cut(s)	654, 900
PspGI	CCWGG	2 cut(s)	654, 900
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	3 cut(s)	20, 263, 812
PstNI	CAGNNNCTG	1 cut(s)	628
RruI	TCGCGA	1 cut(s)	789
RsaI	GTAC	2 cut(s)	428, 511
RsaNI	GTAC	2 cut(s)	427, 510
SacI	GAGCTC	1 cut(s)	290
SaqAI	TTAA	6 cut(s)	98, 282, 591, 851, 866, 963
Sau3AI	GATC	1 cut(s)	779
Sau96I	GGNCC	3 cut(s)	20, 263, 812
ScrFI	CCNGG	2 cut(s)	656, 902
SduI	GDGCHC	3 cut(s)	290, 1069, 1180
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	812
SmlI	CTYRAG	3 cut(s)	233, 422, 1146
SmoI	CTYRAG	3 cut(s)	233, 422, 1146
SspMI	CTAG	2 cut(s)	141, 1038
SstI	GAGCTC	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	654, 900
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	2 cut(s)	30, 111
TaqI	TCGA	4 cut(s)	495, 561, 915, 945
TatI	WGTACW	1 cut(s)	509
TfiI	GAWTC	5 cut(s)	46, 310, 659, 721, 905
Tru1I	TTAA	6 cut(s)	98, 282, 591, 851, 866, 963
Tru9I	TTAA	6 cut(s)	98, 282, 591, 851, 866, 963
TscAI	CASTG	2 cut(s)	622, 756
TseFI	GTSAC	2 cut(s)	274, 857
Tsp45I	GTSAC	2 cut(s)	274, 857
TspDTI	ATGAA	4 cut(s)	54, 467, 634, 940
TspRI	CASTG	2 cut(s)	622, 756
VneI	GTGCAC	1 cut(s)	1065
VpaK11BI	GGWCC	1 cut(s)	812
XapI	RAATTY	4 cut(s)	56, 537, 679, 1030
XceI	RCATGY	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XspI	CTAG	2 cut(s)	141, 1038
Zsp2I	ATGCAT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.