Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003953

Physical Location & Seq

Genomic Coordinates Forward (+)

19577036 .. 19597727

Gene Structure 20692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG213500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTGTGAACTTGTTCTAAGTAGGTTAAAGACTTTGTTCAGGGAAGGTTTCACACCTGCCCCATTGGGCAATGCTTGGTACTTGCTTATGTCTATTTGGTGCTGTATTGATGACAACCTTGTGCCAGCCATGACCTCTCTTTTCAGGGCTGTGCCTAATTTGACTACTTTGAACGTATCATCATCTCCCGAGTTTCCTTTTCGTGATGGTGGTGATAATGTATCTGGATTTGATAGGGGATATTGGGAACTCCAAGGGCTTGATTTTGTTTCTAAGCTGGAGGAGGTAACCATAGAGCTTGTCACTGGGTCCAATGGATTTGAAGTAGCAAGGTACATGCTTGAGCATCCTGACATTGTTCAGGGAAGGTTCACACCTGCCCCATTGGGCAGTGCTTGGTACTTGCTTATGTCTATTTGGGGCAGTATTGATGACAACCTTGCCCCAGCCATGACCCCTCTTTTCAGGGCTGTACCTAATTTGGCTATTTTGAACTTTCCTTTTCGTGGTGGTGGTGATAAGGTATCTGGATTTGATAGGGGATATTGGGAACTCCAAGAGCTTGATTTTGTTTCTAAGCTGGAGGAGGTAACCATAGAGCTTACCACTGGCTCCAAGGGATTTGAATTAGCAAGGTACATGCTTGAGCATACTGGTAATTTGAAGAAAATGTTTGTTATTACTACACCCGATCAATCAAGTTTAGTACCCGAAATATGGAGAACCAACCGTACTTCCAATGCTAGAGTTGTCTTTCTGGAAAAACGAAATCTGCCTTGTCATCGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

263

Amino Acids

29.67

Weight (kDa)

5.1

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g19053 FvH4_6g19370 FvH4_6g22710 FvH4_6g22710 FvH4_6g33902 FvH4_7g12363
malus_domestica	MD14G1025800.v1.1
pyrus_communis	pycom14g02500
rosa_chinensis	RchiOBHm_Chr3g0481121
rosa_laevigata	RLG00000023419 RLG00000023953
rosa_multiflora	Rmu_sc0001551.1_g000014 Rmu_sc0001551.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400620 Rroxscaffold_6G00407510
rosa_rugosa	Rorug03G0138200 Rorug03G0138500 Rorug03G0138600
rosa_samantha	Rh3AG188300 Rh3AG188400 Rh3AG240700 Rh3AG316900 Rh3BG217200 Rh3BG217400 Rh3BG217600 Rh3BG276400 Rh3CG213300 Rh3CG213500 Rh3DG267800 Rh7DG163400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	64, 385
Acc36I	ACCTGC	2 cut(s)	64, 385
AfaI	GTAC	7 cut(s)	80, 335, 401, 474, 638, 708, 733
AfiI	CCNNNNNNNGG	2 cut(s)	506, 717
AgsI	TTSAA	5 cut(s)	172, 323, 493, 626, 664
AluBI	AGCT	5 cut(s)	277, 298, 562, 580, 601
AluI	AGCT	5 cut(s)	277, 298, 562, 580, 601
Ama87I	CYCGRG	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	309
AsuHPI	GGTGA	2 cut(s)	224, 527
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	309
BccI	CCATC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	744
BfuAI	ACCTGC	2 cut(s)	64, 385
Bme18I	GGWCC	1 cut(s)	309
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	310, 613
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	355
BmuI	ACTGGG	1 cut(s)	315
BpmI	CTGGAG	2 cut(s)	299, 602
BpuEI	CTTGAG	2 cut(s)	362, 665
BsaJI	CCNNGG	2 cut(s)	253, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	506, 717
Bse1I	ACTGG	3 cut(s)	310, 613, 658
Bse3DI	GCAATG	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	253, 615
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	2 cut(s)	506, 717
BseMI	GCAATG	1 cut(s)	76
BseNI	ACTGG	3 cut(s)	310, 613, 658
BseRI	GAGGAG	2 cut(s)	296, 599
BseYI	CCCAGC	1 cut(s)	445
BsiHKCI	CYCGRG	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	506, 717
BsoBI	CYCGRG	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	691
BspLI	GGNNCC	2 cut(s)	310, 613
BspMI	ACCTGC	2 cut(s)	64, 385
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	310, 613, 658
BssECI	CCNNGG	2 cut(s)	253, 615
BssMI	GATC	1 cut(s)	691
BssT1I	CCWWGG	2 cut(s)	253, 615
Bst4CI	ACNGT	1 cut(s)	731
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	3 cut(s)	17, 273, 576
BstEII	GGTNACC	2 cut(s)	286, 589
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	1 cut(s)	694
BstMBI	GATC	1 cut(s)	691
BstNSI	RCATGY	2 cut(s)	340, 643
BstPI	GGTNACC	2 cut(s)	286, 589
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	3 cut(s)	303, 397, 606
BveI	ACCTGC	2 cut(s)	64, 385
Cac8I	GCNNGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	309
Csp6I	GTAC	7 cut(s)	79, 334, 400, 473, 637, 707, 732
CviAII	CATG	4 cut(s)	130, 337, 451, 640
CviQI	GTAC	7 cut(s)	79, 334, 400, 473, 637, 707, 732
DdeI	CTNAG	3 cut(s)	17, 273, 576
DpnI	GATC	1 cut(s)	693
DpnII	GATC	1 cut(s)	691
Eco130I	CCWWGG	2 cut(s)	253, 615
Eco47I	GGWCC	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	188
Eco91I	GGTNACC	2 cut(s)	286, 589
EcoO65I	GGTNACC	2 cut(s)	286, 589
EcoT14I	CCWWGG	2 cut(s)	253, 615
ErhI	CCWWGG	2 cut(s)	253, 615
FaeI	CATG	4 cut(s)	133, 340, 454, 643
FatI	CATG	4 cut(s)	129, 336, 450, 639
FokI	GGATG	1 cut(s)	333
FspBI	CTAG	1 cut(s)	744
GsaI	CCCAGC	1 cut(s)	449
GsuI	CTGGAG	2 cut(s)	299, 602
Hin1II	CATG	4 cut(s)	133, 340, 454, 643
HphI	GGTGA	2 cut(s)	224, 527
Hpy166II	GTNNAC	2 cut(s)	8, 372
Hpy188III	TCNNGA	6 cut(s)	188, 203, 225, 350, 528, 758
Hpy8I	GTNNAC	2 cut(s)	8, 372
HpyAV	CCTTC	2 cut(s)	38, 360
HpyCH4III	ACNGT	1 cut(s)	731
HpyCH4IV	ACGT	1 cut(s)	174
HpyF3I	CTNAG	3 cut(s)	17, 273, 576
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	4 cut(s)	133, 340, 454, 643
Kzo9I	GATC	1 cut(s)	691
LmnI	GCTCC	1 cut(s)	617
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	3 cut(s)	286, 301, 589
MalI	GATC	1 cut(s)	693
MboI	GATC	1 cut(s)	691
MboII	GAAGA	1 cut(s)	676
MluCI	AATT	4 cut(s)	157, 478, 626, 658
MnlI	CCTC	6 cut(s)	145, 274, 277, 468, 577, 580
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	2 cut(s)	26, 790
NdeII	GATC	1 cut(s)	691
NlaIII	CATG	4 cut(s)	133, 340, 454, 643
NlaIV	GGNNCC	2 cut(s)	310, 613
NmuCI	GTSAC	1 cut(s)	301
NspI	RCATGY	2 cut(s)	340, 643
PaqCI	CACCTGC	2 cut(s)	64, 385
PdmI	GAANNNNTTC	1 cut(s)	12
PspEI	GGTNACC	2 cut(s)	286, 589
PspFI	CCCAGC	1 cut(s)	445
PspN4I	GGNNCC	2 cut(s)	310, 613
PspPI	GGNCC	1 cut(s)	309
PsrI	GAACNNNNNNTAC	2 cut(s)	715, 747
RsaI	GTAC	7 cut(s)	80, 335, 401, 474, 638, 708, 733
RsaNI	GTAC	7 cut(s)	79, 334, 400, 473, 637, 707, 732
SaqAI	TTAA	2 cut(s)	26, 790
Sau3AI	GATC	1 cut(s)	691
Sau96I	GGNCC	1 cut(s)	309
SfaNI	GCATC	1 cut(s)	355
SinI	GGWCC	1 cut(s)	309
SmlI	CTYRAG	2 cut(s)	341, 644
SmoI	CTYRAG	2 cut(s)	341, 644
Sse9I	AATT	4 cut(s)	157, 478, 626, 658
SspMI	CTAG	1 cut(s)	744
StyI	CCWWGG	2 cut(s)	253, 615
TaaI	ACNGT	1 cut(s)	731
TaiI	ACGT	1 cut(s)	177
TasI	AATT	4 cut(s)	157, 478, 626, 658
Tru1I	TTAA	2 cut(s)	26, 790
Tru9I	TTAA	2 cut(s)	26, 790
TscAI	CASTG	3 cut(s)	310, 397, 613
TseFI	GTSAC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	301
TspRI	CASTG	3 cut(s)	310, 397, 613
VpaK11BI	GGWCC	1 cut(s)	309
XceI	RCATGY	2 cut(s)	340, 643
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.